EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000017658 (Gene tree)
Gene ID: 100927218
Gene Symbol: PRPF4
Alias: HPRP4|HPRP4P|PRP4|Prp4p|SNRNP60
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 16774 bases
Position: chrGL834651.1:2881107-2897880
Accession: 100927218
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000020820	PRP4	PF08799.11	3.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000020987	PRPF4-201	2978	-	ENSSHAP00000020820	523 (aa)	XP_003757357	G3WZG5

Gene Model

Click here to download ENSSHAG00000017658's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000017658's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000017658	PRPF4	56	33.333	ENSSHAG00000015266	TBL3	71	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000017658	PRPF4	100	95.411	ENSG00000136875	PRPF4	100	95.411	Homo_sapiens
ENSSHAG00000017658	PRPF4	97	77.339	ENSAPOG00000014132	prpf4	99	77.019	Acanthochromis_polyacanthus
ENSSHAG00000017658	PRPF4	100	95.411	ENSAMEG00000013048	PRPF4	98	95.411	Ailuropoda_melanoleuca
ENSSHAG00000017658	PRPF4	97	76.726	ENSACIG00000005579	prpf4	99	76.726	Amphilophus_citrinellus
ENSSHAG00000017658	PRPF4	97	76.181	ENSAOCG00000005457	prpf4	99	75.882	Amphiprion_ocellaris
ENSSHAG00000017658	PRPF4	97	75.984	ENSAPEG00000000776	prpf4	99	75.686	Amphiprion_percula
ENSSHAG00000017658	PRPF4	97	76.331	ENSATEG00000023013	prpf4	99	76.031	Anabas_testudineus
ENSSHAG00000017658	PRPF4	99	88.996	ENSAPLG00000006534	PRPF4	97	88.996	Anas_platyrhynchos
ENSSHAG00000017658	PRPF4	100	89.143	ENSACAG00000015110	PRPF4	100	89.143	Anolis_carolinensis
ENSSHAG00000017658	PRPF4	100	95.602	ENSANAG00000022464	PRPF4	96	95.602	Aotus_nancymaae
ENSSHAG00000017658	PRPF4	97	75.740	ENSACLG00000019031	prpf4	99	75.740	Astatotilapia_calliptera
ENSSHAG00000017658	PRPF4	97	62.572	ENSAMXG00000006756	prpf4	99	73.861	Astyanax_mexicanus
ENSSHAG00000017658	PRPF4	100	94.837	ENSBTAG00000004571	PRPF4	100	94.837	Bos_taurus
ENSSHAG00000017658	PRPF4	91	43.633	WBGene00007972	prp-4	96	43.633	Caenorhabditis_elegans
ENSSHAG00000017658	PRPF4	100	95.420	ENSCJAG00000017856	PRPF4	100	95.420	Callithrix_jacchus
ENSSHAG00000017658	PRPF4	100	95.411	ENSCAFG00000003224	PRPF4	97	95.411	Canis_familiaris
ENSSHAG00000017658	PRPF4	100	95.411	ENSCAFG00020022637	PRPF4	100	95.411	Canis_lupus_dingo
ENSSHAG00000017658	PRPF4	100	95.038	ENSCHIG00000024648	-	100	95.038	Capra_hircus
ENSSHAG00000017658	PRPF4	100	95.220	ENSTSYG00000010366	PRPF4	100	95.220	Carlito_syrichta
ENSSHAG00000017658	PRPF4	88	86.635	ENSCAPG00000008935	PRPF4	97	86.635	Cavia_aperea
ENSSHAG00000017658	PRPF4	100	89.484	ENSCPOG00000014729	-	100	89.484	Cavia_porcellus
ENSSHAG00000017658	PRPF4	100	94.837	ENSCPOG00000010747	-	100	94.837	Cavia_porcellus
ENSSHAG00000017658	PRPF4	100	95.793	ENSCCAG00000028990	PRPF4	100	95.793	Cebus_capucinus
ENSSHAG00000017658	PRPF4	100	95.602	ENSCATG00000021552	PRPF4	100	95.602	Cercocebus_atys
ENSSHAG00000017658	PRPF4	100	95.029	ENSCLAG00000013448	PRPF4	100	95.029	Chinchilla_lanigera
ENSSHAG00000017658	PRPF4	86	94.248	ENSCHOG00000007233	PRPF4	100	94.248	Choloepus_hoffmanni
ENSSHAG00000017658	PRPF4	99	90.716	ENSCPBG00000019136	PRPF4	78	87.985	Chrysemys_picta_bellii
ENSSHAG00000017658	PRPF4	94	60.362	ENSCING00000001299	-	95	59.717	Ciona_intestinalis
ENSSHAG00000017658	PRPF4	97	57.534	ENSCSAVG00000009178	-	99	59.307	Ciona_savignyi
ENSSHAG00000017658	PRPF4	100	95.411	ENSCANG00000003246	PRPF4	100	95.411	Colobus_angolensis_palliatus
ENSSHAG00000017658	PRPF4	100	95.602	ENSCGRG00001016992	Prpf4	100	95.602	Cricetulus_griseus_chok1gshd
ENSSHAG00000017658	PRPF4	100	95.602	ENSCGRG00000017560	Prpf4	100	95.602	Cricetulus_griseus_crigri
ENSSHAG00000017658	PRPF4	97	75.050	ENSCSEG00000020451	prpf4	99	75.050	Cynoglossus_semilaevis
ENSSHAG00000017658	PRPF4	97	80.000	ENSDARG00000067639	prpf4	99	80.000	Danio_rerio
ENSSHAG00000017658	PRPF4	100	95.220	ENSDNOG00000013203	PRPF4	100	95.220	Dasypus_novemcinctus
ENSSHAG00000017658	PRPF4	100	95.602	ENSDORG00000026275	Prpf4	100	95.602	Dipodomys_ordii
ENSSHAG00000017658	PRPF4	87	56.236	FBgn0036733	U4-U6-60K	82	56.455	Drosophila_melanogaster
ENSSHAG00000017658	PRPF4	100	93.499	ENSETEG00000020389	PRPF4	100	93.499	Echinops_telfairi
ENSSHAG00000017658	PRPF4	97	71.719	ENSEBUG00000015229	prpf4	88	72.172	Eptatretus_burgeri
ENSSHAG00000017658	PRPF4	100	95.602	ENSEASG00005022678	PRPF4	100	95.602	Equus_asinus_asinus
ENSSHAG00000017658	PRPF4	100	95.602	ENSECAG00000007072	PRPF4	100	95.602	Equus_caballus
ENSSHAG00000017658	PRPF4	100	75.000	ENSEEUG00000007480	PRPF4	100	75.000	Erinaceus_europaeus
ENSSHAG00000017658	PRPF4	97	80.396	ENSELUG00000007510	prpf4	99	80.396	Esox_lucius
ENSSHAG00000017658	PRPF4	100	95.420	ENSFCAG00000005514	PRPF4	100	95.420	Felis_catus
ENSSHAG00000017658	PRPF4	97	87.640	ENSFALG00000005423	PRPF4	90	85.376	Ficedula_albicollis
ENSSHAG00000017658	PRPF4	100	94.837	ENSFDAG00000005839	PRPF4	100	94.837	Fukomys_damarensis
ENSSHAG00000017658	PRPF4	97	74.753	ENSFHEG00000001300	prpf4	99	74.753	Fundulus_heteroclitus
ENSSHAG00000017658	PRPF4	98	89.824	ENSGALG00000008857	PRPF4	97	88.697	Gallus_gallus
ENSSHAG00000017658	PRPF4	65	69.501	ENSGAFG00000012164	prpf4	70	69.501	Gambusia_affinis
ENSSHAG00000017658	PRPF4	97	69.291	ENSGACG00000015476	prpf4	99	68.627	Gasterosteus_aculeatus
ENSSHAG00000017658	PRPF4	100	87.800	ENSGAGG00000025029	PRPF4	100	87.800	Gopherus_agassizii
ENSSHAG00000017658	PRPF4	100	95.411	ENSGGOG00000006943	PRPF4	100	95.411	Gorilla_gorilla
ENSSHAG00000017658	PRPF4	97	75.542	ENSHBUG00000000562	prpf4	99	75.542	Haplochromis_burtoni
ENSSHAG00000017658	PRPF4	100	78.095	ENSHGLG00000016628	-	100	78.857	Heterocephalus_glaber_female
ENSSHAG00000017658	PRPF4	100	94.837	ENSHGLG00000015191	PRPF4	100	94.837	Heterocephalus_glaber_female
ENSSHAG00000017658	PRPF4	100	76.673	ENSHGLG00000003838	-	100	76.673	Heterocephalus_glaber_female
ENSSHAG00000017658	PRPF4	100	76.673	ENSHGLG00100005571	-	100	76.673	Heterocephalus_glaber_male
ENSSHAG00000017658	PRPF4	97	78.614	ENSIPUG00000017956	PRPF4	99	78.020	Ictalurus_punctatus
ENSSHAG00000017658	PRPF4	100	95.029	ENSSTOG00000027833	PRPF4	100	95.029	Ictidomys_tridecemlineatus
ENSSHAG00000017658	PRPF4	100	95.411	ENSJJAG00000008838	Prpf4	100	95.411	Jaculus_jaculus
ENSSHAG00000017658	PRPF4	97	75.345	ENSKMAG00000013236	prpf4	99	75.345	Kryptolebias_marmoratus
ENSSHAG00000017658	PRPF4	97	75.248	ENSLBEG00000020611	prpf4	99	74.951	Labrus_bergylta
ENSSHAG00000017658	PRPF4	97	80.588	ENSLACG00000016317	PRPF4	98	80.588	Latimeria_chalumnae
ENSSHAG00000017658	PRPF4	96	81.600	ENSLOCG00000000581	prpf4	99	81.600	Lepisosteus_oculatus
ENSSHAG00000017658	PRPF4	100	95.029	ENSLAFG00000018225	PRPF4	100	95.029	Loxodonta_africana
ENSSHAG00000017658	PRPF4	100	95.411	ENSMFAG00000039397	PRPF4	100	95.411	Macaca_fascicularis
ENSSHAG00000017658	PRPF4	100	95.411	ENSMMUG00000005844	PRPF4	100	95.602	Macaca_mulatta
ENSSHAG00000017658	PRPF4	100	85.086	ENSMNEG00000033737	PRPF4	100	85.277	Macaca_nemestrina
ENSSHAG00000017658	PRPF4	100	95.602	ENSMLEG00000040284	PRPF4	100	95.602	Mandrillus_leucophaeus
ENSSHAG00000017658	PRPF4	97	75.345	ENSMAMG00000020141	prpf4	99	75.049	Mastacembelus_armatus
ENSSHAG00000017658	PRPF4	97	75.740	ENSMZEG00005023205	prpf4	99	75.740	Maylandia_zebra
ENSSHAG00000017658	PRPF4	99	87.931	ENSMGAG00000001796	PRPF4	97	87.931	Meleagris_gallopavo
ENSSHAG00000017658	PRPF4	97	95.678	ENSMAUG00000018022	Prpf4	100	95.220	Mesocricetus_auratus
ENSSHAG00000017658	PRPF4	100	94.466	ENSMICG00000015022	PRPF4	100	94.466	Microcebus_murinus
ENSSHAG00000017658	PRPF4	100	95.029	ENSMOCG00000018273	Prpf4	100	95.029	Microtus_ochrogaster
ENSSHAG00000017658	PRPF4	97	73.964	ENSMMOG00000021177	prpf4	99	73.964	Mola_mola
ENSSHAG00000017658	PRPF4	100	99.235	ENSMODG00000025096	-	97	99.235	Monodelphis_domestica
ENSSHAG00000017658	PRPF4	100	99.044	ENSMODG00000004444	-	100	99.044	Monodelphis_domestica
ENSSHAG00000017658	PRPF4	97	75.740	ENSMALG00000013624	prpf4	99	75.442	Monopterus_albus
ENSSHAG00000017658	PRPF4	100	95.411	MGP_CAROLIEiJ_G0026078	Prpf4	100	95.411	Mus_caroli
ENSSHAG00000017658	PRPF4	100	95.411	ENSMUSG00000066148	Prpf4	100	95.411	Mus_musculus
ENSSHAG00000017658	PRPF4	100	95.220	MGP_PahariEiJ_G0028413	Prpf4	100	95.220	Mus_pahari
ENSSHAG00000017658	PRPF4	100	95.411	MGP_SPRETEiJ_G0027042	Prpf4	100	95.411	Mus_spretus
ENSSHAG00000017658	PRPF4	100	95.411	ENSMPUG00000007883	PRPF4	100	95.411	Mustela_putorius_furo
ENSSHAG00000017658	PRPF4	100	93.308	ENSMLUG00000008626	-	97	93.308	Myotis_lucifugus
ENSSHAG00000017658	PRPF4	100	95.220	ENSMLUG00000015309	-	97	95.220	Myotis_lucifugus
ENSSHAG00000017658	PRPF4	100	90.057	ENSNGAG00000000468	Prpf4	100	90.057	Nannospalax_galili
ENSSHAG00000017658	PRPF4	97	75.937	ENSNBRG00000007972	prpf4	99	75.937	Neolamprologus_brichardi
ENSSHAG00000017658	PRPF4	100	95.602	ENSNLEG00000016647	PRPF4	100	95.602	Nomascus_leucogenys
ENSSHAG00000017658	PRPF4	98	99.805	ENSMEUG00000013256	PRPF4	100	99.805	Notamacropus_eugenii
ENSSHAG00000017658	PRPF4	100	95.038	ENSOPRG00000005302	PRPF4	100	95.038	Ochotona_princeps
ENSSHAG00000017658	PRPF4	100	95.220	ENSODEG00000018147	PRPF4	100	95.220	Octodon_degus
ENSSHAG00000017658	PRPF4	98	74.903	ENSONIG00000012671	prpf4	99	75.740	Oreochromis_niloticus
ENSSHAG00000017658	PRPF4	100	95.793	ENSOCUG00000005046	PRPF4	100	95.793	Oryctolagus_cuniculus
ENSSHAG00000017658	PRPF4	97	74.455	ENSORLG00000019641	prpf4	99	74.162	Oryzias_latipes
ENSSHAG00000017658	PRPF4	97	74.455	ENSORLG00020019438	prpf4	99	74.162	Oryzias_latipes_hni
ENSSHAG00000017658	PRPF4	97	74.268	ENSOMEG00000020941	prpf4	99	73.958	Oryzias_melastigma
ENSSHAG00000017658	PRPF4	100	90.631	ENSOGAG00000007802	PRPF4	98	90.631	Otolemur_garnettii
ENSSHAG00000017658	PRPF4	100	95.220	ENSOARG00000006319	PRPF4	97	95.220	Ovis_aries
ENSSHAG00000017658	PRPF4	100	95.411	ENSPPAG00000041797	PRPF4	100	95.411	Pan_paniscus
ENSSHAG00000017658	PRPF4	100	95.602	ENSPPRG00000014360	PRPF4	100	95.602	Panthera_pardus
ENSSHAG00000017658	PRPF4	100	95.602	ENSPTIG00000009574	PRPF4	100	95.602	Panthera_tigris_altaica
ENSSHAG00000017658	PRPF4	100	95.411	ENSPTRG00000021274	PRPF4	100	95.229	Pan_troglodytes
ENSSHAG00000017658	PRPF4	100	95.411	ENSPANG00000025776	PRPF4	96	95.411	Papio_anubis
ENSSHAG00000017658	PRPF4	97	80.990	ENSPKIG00000017259	prpf4	99	80.990	Paramormyrops_kingsleyae
ENSSHAG00000017658	PRPF4	98	90.607	ENSPSIG00000010713	PRPF4	90	90.607	Pelodiscus_sinensis
ENSSHAG00000017658	PRPF4	99	57.609	ENSPMGG00000000997	prpf4	99	57.713	Periophthalmus_magnuspinnatus
ENSSHAG00000017658	PRPF4	100	95.602	ENSPEMG00000024115	Prpf4	100	95.602	Peromyscus_maniculatus_bairdii
ENSSHAG00000017658	PRPF4	98	99.805	ENSPCIG00000003821	PRPF4	99	99.805	Phascolarctos_cinereus
ENSSHAG00000017658	PRPF4	97	68.689	ENSPFOG00000013524	prpf4	99	70.859	Poecilia_formosa
ENSSHAG00000017658	PRPF4	82	70.642	ENSPLAG00000011620	prpf4	97	70.279	Poecilia_latipinna
ENSSHAG00000017658	PRPF4	92	72.024	ENSPMEG00000006813	prpf4	99	72.024	Poecilia_mexicana
ENSSHAG00000017658	PRPF4	98	95.525	ENSPCAG00000002561	PRPF4	99	95.525	Procavia_capensis
ENSSHAG00000017658	PRPF4	97	95.481	ENSPCOG00000011975	PRPF4	100	95.029	Propithecus_coquereli
ENSSHAG00000017658	PRPF4	100	91.603	ENSPVAG00000004708	PRPF4	100	91.603	Pteropus_vampyrus
ENSSHAG00000017658	PRPF4	97	75.740	ENSPNYG00000008013	prpf4	99	75.740	Pundamilia_nyererei
ENSSHAG00000017658	PRPF4	97	80.792	ENSPNAG00000000697	prpf4	99	80.198	Pygocentrus_nattereri
ENSSHAG00000017658	PRPF4	100	95.220	ENSRNOG00000014777	Prpf4	100	95.220	Rattus_norvegicus
ENSSHAG00000017658	PRPF4	100	95.411	ENSRBIG00000040221	PRPF4	100	95.411	Rhinopithecus_bieti
ENSSHAG00000017658	PRPF4	100	95.411	ENSRROG00000040240	PRPF4	100	95.411	Rhinopithecus_roxellana
ENSSHAG00000017658	PRPF4	96	82.800	ENSSFOG00015008963	prpf4	99	82.800	Scleropages_formosus
ENSSHAG00000017658	PRPF4	97	74.656	ENSSMAG00000008889	prpf4	99	74.656	Scophthalmus_maximus
ENSSHAG00000017658	PRPF4	97	72.387	ENSSDUG00000022083	prpf4	99	72.781	Seriola_dumerili
ENSSHAG00000017658	PRPF4	97	72.584	ENSSLDG00000008115	prpf4	99	72.978	Seriola_lalandi_dorsalis
ENSSHAG00000017658	PRPF4	100	90.057	ENSSPUG00000015582	PRPF4	100	90.057	Sphenodon_punctatus
ENSSHAG00000017658	PRPF4	97	70.392	ENSSPAG00000011286	prpf4	99	70.117	Stegastes_partitus
ENSSHAG00000017658	PRPF4	100	95.602	ENSSSCG00000024648	PRPF4	100	95.602	Sus_scrofa
ENSSHAG00000017658	PRPF4	94	90.264	ENSTGUG00000002623	PRPF4	100	90.593	Taeniopygia_guttata
ENSSHAG00000017658	PRPF4	96	75.050	ENSTRUG00000008853	prpf4	98	75.050	Takifugu_rubripes
ENSSHAG00000017658	PRPF4	96	74.451	ENSTNIG00000013250	prpf4	99	74.451	Tetraodon_nigroviridis
ENSSHAG00000017658	PRPF4	100	86.832	ENSTBEG00000000821	PRPF4	100	86.832	Tupaia_belangeri
ENSSHAG00000017658	PRPF4	81	98.837	ENSTTRG00000003246	PRPF4	85	98.837	Tursiops_truncatus
ENSSHAG00000017658	PRPF4	64	90.179	ENSUAMG00000018288	PRPF4	90	90.179	Ursus_americanus
ENSSHAG00000017658	PRPF4	100	94.646	ENSUMAG00000019375	PRPF4	100	94.646	Ursus_maritimus
ENSSHAG00000017658	PRPF4	100	95.229	ENSVPAG00000005281	PRPF4	100	95.229	Vicugna_pacos
ENSSHAG00000017658	PRPF4	100	94.307	ENSVVUG00000002476	PRPF4	99	95.842	Vulpes_vulpes
ENSSHAG00000017658	PRPF4	69	57.222	ENSXCOG00000006101	prpf4	93	58.621	Xiphophorus_couchianus
ENSSHAG00000017658	PRPF4	88	62.771	ENSXMAG00000002750	prpf4	99	63.905	Xiphophorus_maculatus