EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000017998 (Gene tree)
Gene ID: 100926324
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 24509 bases
Position: chrGL861670.1:3165314-3189822
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000021231	MA3	PF02847.17	2.6e-25	1	1
ENSSHAP00000021230	MA3	PF02847.17	3.2e-25	1	1
ENSSHAP00000021231	MIF4G	PF02854.19	4e-18	1	1
ENSSHAP00000021230	MIF4G	PF02854.19	4.7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000021403	-	3261	-	ENSSHAP00000021231	679 (aa)	-	G3X0M6
ENSSHAT00000021402	-	3450	-	ENSSHAP00000021230	742 (aa)	-	G3X0M5

Gene Model

Click here to download ENSSHAG00000017998's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000017998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000017998	-	61	84.185	ENSSHAG00000002835	-	99	85.158

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000017998	-	98	72.294	ENSG00000146909	NOM1	85	71.070	Homo_sapiens
ENSSHAG00000017998	-	71	69.981	ENSAPOG00000012073	nom1	68	65.630	Acanthochromis_polyacanthus
ENSSHAG00000017998	-	98	68.803	ENSAMEG00000001412	NOM1	95	68.902	Ailuropoda_melanoleuca
ENSSHAG00000017998	-	99	58.468	ENSACIG00000018050	nom1	79	62.239	Amphilophus_citrinellus
ENSSHAG00000017998	-	77	69.011	ENSAOCG00000006229	nom1	65	66.908	Amphiprion_ocellaris
ENSSHAG00000017998	-	77	69.202	ENSAPEG00000015994	nom1	65	67.089	Amphiprion_percula
ENSSHAG00000017998	-	99	61.877	ENSATEG00000005405	nom1	81	61.869	Anabas_testudineus
ENSSHAG00000017998	-	95	67.530	ENSAPLG00000006585	NOM1	80	77.055	Anas_platyrhynchos
ENSSHAG00000017998	-	89	69.243	ENSACAG00000011192	NOM1	84	64.345	Anolis_carolinensis
ENSSHAG00000017998	-	77	69.886	ENSACLG00000000033	nom1	63	69.886	Astatotilapia_calliptera
ENSSHAG00000017998	-	76	67.176	ENSAMXG00000041486	nom1	66	63.158	Astyanax_mexicanus
ENSSHAG00000017998	-	98	67.728	ENSBTAG00000016435	NOM1	84	65.638	Bos_taurus
ENSSHAG00000017998	-	98	71.695	ENSCJAG00000004336	NOM1	85	69.120	Callithrix_jacchus
ENSSHAG00000017998	-	98	68.975	ENSCAFG00020005121	NOM1	65	75.666	Canis_lupus_dingo
ENSSHAG00000017998	-	98	65.657	ENSCHIG00000020102	NOM1	84	65.596	Capra_hircus
ENSSHAG00000017998	-	99	74.780	ENSTSYG00000000227	NOM1	79	74.047	Carlito_syrichta
ENSSHAG00000017998	-	77	79.885	ENSCAPG00000016273	NOM1	100	79.885	Cavia_aperea
ENSSHAG00000017998	-	98	68.101	ENSCPOG00000025538	NOM1	78	67.804	Cavia_porcellus
ENSSHAG00000017998	-	88	82.311	ENSCCAG00000014944	NOM1	100	81.742	Cebus_capucinus
ENSSHAG00000017998	-	98	68.452	ENSCLAG00000000267	NOM1	68	73.838	Chinchilla_lanigera
ENSSHAG00000017998	-	99	70.238	ENSCPBG00000018215	NOM1	73	79.811	Chrysemys_picta_bellii
ENSSHAG00000017998	-	76	40.270	ENSCING00000005248	-	74	39.818	Ciona_intestinalis
ENSSHAG00000017998	-	78	82.210	ENSCANG00000041984	NOM1	92	82.210	Colobus_angolensis_palliatus
ENSSHAG00000017998	-	98	71.243	ENSCGRG00001020293	Nom1	66	78.153	Cricetulus_griseus_chok1gshd
ENSSHAG00000017998	-	77	80.916	ENSCGRG00000005405	Nom1	98	80.916	Cricetulus_griseus_crigri
ENSSHAG00000017998	-	92	58.991	ENSCSEG00000000932	nom1	65	64.083	Cynoglossus_semilaevis
ENSSHAG00000017998	-	99	60.142	ENSCVAG00000007562	nom1	69	64.948	Cyprinodon_variegatus
ENSSHAG00000017998	-	99	58.462	ENSDARG00000060027	nom1	99	69.358	Danio_rerio
ENSSHAG00000017998	-	81	63.845	ENSDORG00000015682	Nom1	98	61.111	Dipodomys_ordii
ENSSHAG00000017998	-	89	68.868	ENSETEG00000003104	NOM1	71	68.868	Echinops_telfairi
ENSSHAG00000017998	-	63	50.926	ENSEBUG00000010077	nom1	95	50.926	Eptatretus_burgeri
ENSSHAG00000017998	-	98	73.599	ENSEASG00005001489	NOM1	84	71.180	Equus_asinus_asinus
ENSSHAG00000017998	-	82	78.686	ENSECAG00000007596	NOM1	79	71.218	Equus_caballus
ENSSHAG00000017998	-	79	67.587	ENSELUG00000006266	nom1	64	67.587	Esox_lucius
ENSSHAG00000017998	-	98	69.220	ENSFCAG00000006467	NOM1	68	76.429	Felis_catus
ENSSHAG00000017998	-	99	66.524	ENSFALG00000006904	NOM1	97	65.942	Ficedula_albicollis
ENSSHAG00000017998	-	99	69.841	ENSFDAG00000016241	NOM1	81	69.412	Fukomys_damarensis
ENSSHAG00000017998	-	99	58.078	ENSFHEG00000015974	nom1	64	67.228	Fundulus_heteroclitus
ENSSHAG00000017998	-	76	63.584	ENSGMOG00000005129	nom1	67	63.584	Gadus_morhua
ENSSHAG00000017998	-	99	65.318	ENSGALG00000006437	NOM1	61	73.996	Gallus_gallus
ENSSHAG00000017998	-	80	67.336	ENSGAFG00000003211	nom1	66	67.518	Gambusia_affinis
ENSSHAG00000017998	-	99	70.597	ENSGAGG00000014347	NOM1	64	80.455	Gopherus_agassizii
ENSSHAG00000017998	-	98	71.573	ENSGGOG00000010920	NOM1	79	70.938	Gorilla_gorilla
ENSSHAG00000017998	-	99	60.714	ENSHBUG00000014616	nom1	64	69.101	Haplochromis_burtoni
ENSSHAG00000017998	-	100	70.000	ENSHGLG00000007392	NOM1	67	74.355	Heterocephalus_glaber_female
ENSSHAG00000017998	-	100	70.000	ENSHGLG00100014407	NOM1	63	78.797	Heterocephalus_glaber_male
ENSSHAG00000017998	-	79	63.993	ENSIPUG00000013980	nom1	66	62.075	Ictalurus_punctatus
ENSSHAG00000017998	-	83	76.316	ENSSTOG00000031736	NOM1	99	76.585	Ictidomys_tridecemlineatus
ENSSHAG00000017998	-	72	81.800	ENSJJAG00000011716	Nom1	99	81.800	Jaculus_jaculus
ENSSHAG00000017998	-	72	67.407	ENSLBEG00000009252	nom1	82	57.302	Labrus_bergylta
ENSSHAG00000017998	-	99	61.836	ENSLACG00000011777	NOM1	63	73.512	Latimeria_chalumnae
ENSSHAG00000017998	-	99	61.472	ENSLOCG00000012452	nom1	83	60.489	Lepisosteus_oculatus
ENSSHAG00000017998	-	98	67.109	ENSLAFG00000007119	NOM1	66	74.535	Loxodonta_africana
ENSSHAG00000017998	-	100	67.020	ENSMMUG00000039033	NOM1	85	67.411	Macaca_mulatta
ENSSHAG00000017998	-	78	83.208	ENSMLEG00000037062	NOM1	99	83.208	Mandrillus_leucophaeus
ENSSHAG00000017998	-	99	56.522	ENSMAMG00000004118	nom1	65	65.146	Mastacembelus_armatus
ENSSHAG00000017998	-	77	69.886	ENSMZEG00005000384	nom1	63	69.886	Maylandia_zebra
ENSSHAG00000017998	-	99	66.087	ENSMGAG00000005051	NOM1	79	73.048	Meleagris_gallopavo
ENSSHAG00000017998	-	98	72.117	ENSMAUG00000017988	Nom1	86	68.414	Mesocricetus_auratus
ENSSHAG00000017998	-	98	71.512	ENSMICG00000017531	NOM1	81	72.093	Microcebus_murinus
ENSSHAG00000017998	-	98	72.607	ENSMOCG00000015962	Nom1	79	72.674	Microtus_ochrogaster
ENSSHAG00000017998	-	99	56.101	ENSMMOG00000004419	nom1	81	56.250	Mola_mola
ENSSHAG00000017998	-	98	86.277	ENSMODG00000005177	NOM1	86	82.219	Monodelphis_domestica
ENSSHAG00000017998	-	93	59.607	ENSMALG00000008800	nom1	67	65.226	Monopterus_albus
ENSSHAG00000017998	-	100	70.445	MGP_CAROLIEiJ_G0027043	Nom1	79	70.778	Mus_caroli
ENSSHAG00000017998	-	100	71.676	ENSMUSG00000001569	Nom1	79	70.778	Mus_musculus
ENSSHAG00000017998	-	100	71.821	MGP_SPRETEiJ_G0028039	Nom1	79	70.925	Mus_spretus
ENSSHAG00000017998	-	98	64.978	ENSMPUG00000009745	NOM1	99	65.292	Mustela_putorius_furo
ENSSHAG00000017998	-	90	71.036	ENSMLUG00000009129	NOM1	92	77.240	Myotis_lucifugus
ENSSHAG00000017998	-	99	58.493	ENSNBRG00000016429	nom1	94	70.076	Neolamprologus_brichardi
ENSSHAG00000017998	-	98	70.386	ENSNLEG00000000238	NOM1	85	69.565	Nomascus_leucogenys
ENSSHAG00000017998	-	84	78.345	ENSMEUG00000001108	NOM1	74	77.996	Notamacropus_eugenii
ENSSHAG00000017998	-	70	66.071	ENSOPRG00000014676	NOM1	56	65.889	Ochotona_princeps
ENSSHAG00000017998	-	98	68.940	ENSODEG00000009399	NOM1	81	74.733	Octodon_degus
ENSSHAG00000017998	-	77	69.886	ENSONIG00000005958	nom1	68	69.288	Oreochromis_niloticus
ENSSHAG00000017998	-	68	83.333	ENSOANG00000006139	-	97	83.333	Ornithorhynchus_anatinus
ENSSHAG00000017998	-	99	62.849	ENSOCUG00000021448	-	91	68.784	Oryctolagus_cuniculus
ENSSHAG00000017998	-	98	74.307	ENSOCUG00000004071	-	80	74.487	Oryctolagus_cuniculus
ENSSHAG00000017998	-	98	58.883	ENSORLG00000010541	nom1	66	65.942	Oryzias_latipes
ENSSHAG00000017998	-	98	58.739	ENSORLG00020010789	nom1	72	65.295	Oryzias_latipes_hni
ENSSHAG00000017998	-	98	58.453	ENSORLG00015010475	nom1	90	58.499	Oryzias_latipes_hsok
ENSSHAG00000017998	-	75	70.117	ENSOMEG00000004219	nom1	65	67.468	Oryzias_melastigma
ENSSHAG00000017998	-	89	74.629	ENSOGAG00000001124	NOM1	92	78.966	Otolemur_garnettii
ENSSHAG00000017998	-	100	64.550	ENSOARG00000007261	NOM1	99	64.173	Ovis_aries
ENSSHAG00000017998	-	98	72.294	ENSPPAG00000041374	NOM1	85	71.202	Pan_paniscus
ENSSHAG00000017998	-	98	67.770	ENSPTIG00000013532	NOM1	97	67.804	Panthera_tigris_altaica
ENSSHAG00000017998	-	98	72.294	ENSPTRG00000019917	NOM1	85	71.070	Pan_troglodytes
ENSSHAG00000017998	-	98	72.334	ENSPANG00000007605	NOM1	85	70.346	Papio_anubis
ENSSHAG00000017998	-	99	55.524	ENSPKIG00000005825	nom1	82	55.443	Paramormyrops_kingsleyae
ENSSHAG00000017998	-	79	78.650	ENSPSIG00000017848	NOM1	94	76.896	Pelodiscus_sinensis
ENSSHAG00000017998	-	99	61.248	ENSPMGG00000002577	nom1	67	68.670	Periophthalmus_magnuspinnatus
ENSSHAG00000017998	-	98	73.638	ENSPEMG00000024180	Nom1	78	73.490	Peromyscus_maniculatus_bairdii
ENSSHAG00000017998	-	99	83.286	ENSPCIG00000027941	NOM1	83	81.442	Phascolarctos_cinereus
ENSSHAG00000017998	-	76	69.540	ENSPFOG00000015771	nom1	65	67.518	Poecilia_formosa
ENSSHAG00000017998	-	77	69.275	ENSPLAG00000007856	nom1	67	67.642	Poecilia_latipinna
ENSSHAG00000017998	-	99	59.547	ENSPMEG00000014155	nom1	67	67.276	Poecilia_mexicana
ENSSHAG00000017998	-	99	60.201	ENSPREG00000008850	nom1	66	67.459	Poecilia_reticulata
ENSSHAG00000017998	-	98	67.244	ENSPPYG00000018222	NOM1	84	66.622	Pongo_abelii
ENSSHAG00000017998	-	73	74.766	ENSPCAG00000000440	NOM1	84	58.798	Procavia_capensis
ENSSHAG00000017998	-	78	80.000	ENSPCOG00000015222	NOM1	99	80.000	Propithecus_coquereli
ENSSHAG00000017998	-	98	67.784	ENSPVAG00000014760	NOM1	83	65.680	Pteropus_vampyrus
ENSSHAG00000017998	-	79	68.901	ENSPNYG00000006975	nom1	96	69.159	Pundamilia_nyererei
ENSSHAG00000017998	-	79	64.630	ENSPNAG00000011085	nom1	60	64.870	Pygocentrus_nattereri
ENSSHAG00000017998	-	100	67.241	ENSRNOG00000048969	AABR07059041.1	83	67.254	Rattus_norvegicus
ENSSHAG00000017998	-	98	72.230	ENSRBIG00000037042	NOM1	85	70.356	Rhinopithecus_bieti
ENSSHAG00000017998	-	98	71.942	ENSRROG00000037293	NOM1	85	70.092	Rhinopithecus_roxellana
ENSSHAG00000017998	-	67	32.207	YLR336C	-	59	30.769	Saccharomyces_cerevisiae
ENSSHAG00000017998	-	71	65.625	ENSSFOG00015003196	nom1	99	65.625	Scleropages_formosus
ENSSHAG00000017998	-	99	59.497	ENSSMAG00000011047	nom1	65	68.535	Scophthalmus_maximus
ENSSHAG00000017998	-	99	59.490	ENSSDUG00000006834	nom1	81	59.339	Seriola_dumerili
ENSSHAG00000017998	-	77	70.152	ENSSLDG00000021812	nom1	63	69.288	Seriola_lalandi_dorsalis
ENSSHAG00000017998	-	99	59.944	ENSSPUG00000002556	NOM1	89	80.000	Sphenodon_punctatus
ENSSHAG00000017998	-	73	67.706	ENSSPAG00000000953	nom1	82	57.183	Stegastes_partitus
ENSSHAG00000017998	-	50	74.487	ENSTGUG00000016587	-	100	74.487	Taeniopygia_guttata
ENSSHAG00000017998	-	99	65.374	ENSTGUG00000000702	-	78	73.162	Taeniopygia_guttata
ENSSHAG00000017998	-	99	58.739	ENSTRUG00000010239	nom1	64	67.355	Takifugu_rubripes
ENSSHAG00000017998	-	99	58.636	ENSTNIG00000012783	nom1	67	66.794	Tetraodon_nigroviridis
ENSSHAG00000017998	-	98	70.102	ENSTTRG00000009691	NOM1	87	68.484	Tursiops_truncatus
ENSSHAG00000017998	-	98	68.240	ENSUAMG00000025450	NOM1	85	65.960	Ursus_americanus
ENSSHAG00000017998	-	98	71.174	ENSUMAG00000014275	NOM1	95	70.641	Ursus_maritimus
ENSSHAG00000017998	-	98	69.308	ENSVVUG00000002608	NOM1	86	65.240	Vulpes_vulpes
ENSSHAG00000017998	-	99	59.744	ENSXETG00000021611	nom1	82	79.024	Xenopus_tropicalis
ENSSHAG00000017998	-	99	58.840	ENSXMAG00000002451	nom1	66	67.091	Xiphophorus_maculatus