EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000018056 (Gene tree)
Gene ID: 100928190
Gene Symbol: LSM10
Alias: MGC15749
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 372 bases
Position: chrGL849782.1:3217723-3218094
Accession: 100928190
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000021302	LSM	PF01423.22	2.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000021475	LSM10-201	372	-	ENSSHAP00000021302	123 (aa)	XP_003765416	G3X0U7

Gene Model

Click here to download ENSSHAG00000018056's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000018056's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000018056	LSM10	60	33.784	ENSSHAG00000011791	SNRPD1	62	33.784

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000018056	LSM10	100	80.488	ENSG00000181817	LSM10	100	80.488	Homo_sapiens
ENSSHAG00000018056	LSM10	100	82.927	ENSAMEG00000019854	LSM10	100	82.927	Ailuropoda_melanoleuca
ENSSHAG00000018056	LSM10	92	72.566	ENSACIG00000015420	oscp1a	75	72.566	Amphilophus_citrinellus
ENSSHAG00000018056	LSM10	96	72.034	ENSAOCG00000015618	LSM10	98	72.034	Amphiprion_ocellaris
ENSSHAG00000018056	LSM10	87	72.477	ENSAOCG00000015607	LSM10	84	72.477	Amphiprion_ocellaris
ENSSHAG00000018056	LSM10	96	72.034	ENSAOCG00000014654	-	98	72.034	Amphiprion_ocellaris
ENSSHAG00000018056	LSM10	87	72.477	ENSAPEG00000021851	LSM10	84	72.477	Amphiprion_percula
ENSSHAG00000018056	LSM10	96	72.034	ENSAPEG00000021845	-	98	72.034	Amphiprion_percula
ENSSHAG00000018056	LSM10	94	67.241	ENSATEG00000006310	oscp1a	86	67.241	Anabas_testudineus
ENSSHAG00000018056	LSM10	100	70.732	ENSACAG00000001231	LSM10	100	70.732	Anolis_carolinensis
ENSSHAG00000018056	LSM10	100	81.301	ENSANAG00000018759	-	100	81.301	Aotus_nancymaae
ENSSHAG00000018056	LSM10	98	80.165	ENSANAG00000031489	-	99	80.165	Aotus_nancymaae
ENSSHAG00000018056	LSM10	96	70.339	ENSACLG00000004728	oscp1a	96	70.339	Astatotilapia_calliptera
ENSSHAG00000018056	LSM10	96	67.797	ENSAMXG00000025301	oscp1a	98	67.797	Astyanax_mexicanus
ENSSHAG00000018056	LSM10	98	82.645	ENSBTAG00000024096	LSM10	99	82.645	Bos_taurus
ENSSHAG00000018056	LSM10	100	80.488	ENSCJAG00000044880	LSM10	100	80.488	Callithrix_jacchus
ENSSHAG00000018056	LSM10	100	85.366	ENSCAFG00000003382	LSM10	100	85.366	Canis_familiaris
ENSSHAG00000018056	LSM10	100	85.366	ENSCAFG00020008920	LSM10	100	85.366	Canis_lupus_dingo
ENSSHAG00000018056	LSM10	98	82.645	ENSCHIG00000009398	LSM10	99	82.645	Capra_hircus
ENSSHAG00000018056	LSM10	100	82.927	ENSCAPG00000012567	LSM10	100	82.927	Cavia_aperea
ENSSHAG00000018056	LSM10	100	82.927	ENSCPOG00000039302	LSM10	100	82.927	Cavia_porcellus
ENSSHAG00000018056	LSM10	100	81.301	ENSCCAG00000018913	-	100	81.301	Cebus_capucinus
ENSSHAG00000018056	LSM10	98	79.339	ENSCCAG00000008378	-	98	79.339	Cebus_capucinus
ENSSHAG00000018056	LSM10	100	80.488	ENSCATG00000006589	LSM10	100	80.488	Cercocebus_atys
ENSSHAG00000018056	LSM10	100	84.553	ENSCLAG00000008633	LSM10	100	84.553	Chinchilla_lanigera
ENSSHAG00000018056	LSM10	100	80.488	ENSCSAG00000000134	LSM10	100	80.488	Chlorocebus_sabaeus
ENSSHAG00000018056	LSM10	100	80.000	ENSCHOG00000008615	LSM10	100	80.000	Choloepus_hoffmanni
ENSSHAG00000018056	LSM10	83	31.373	ENSCSAVG00000001896	-	87	31.373	Ciona_savignyi
ENSSHAG00000018056	LSM10	100	80.488	ENSCANG00000019928	LSM10	100	80.488	Colobus_angolensis_palliatus
ENSSHAG00000018056	LSM10	93	74.359	ENSCGRG00001022673	-	94	74.359	Cricetulus_griseus_chok1gshd
ENSSHAG00000018056	LSM10	98	82.645	ENSCGRG00001004317	-	99	82.645	Cricetulus_griseus_chok1gshd
ENSSHAG00000018056	LSM10	93	74.359	ENSCGRG00000015514	-	94	74.359	Cricetulus_griseus_crigri
ENSSHAG00000018056	LSM10	98	82.645	ENSCGRG00000014935	-	99	82.645	Cricetulus_griseus_crigri
ENSSHAG00000018056	LSM10	96	66.949	ENSCSEG00000010374	oscp1a	79	66.949	Cynoglossus_semilaevis
ENSSHAG00000018056	LSM10	96	66.102	ENSCVAG00000001536	oscp1a	89	66.102	Cyprinodon_variegatus
ENSSHAG00000018056	LSM10	69	72.941	ENSDARG00000109563	CABZ01074453.1	99	72.941	Danio_rerio
ENSSHAG00000018056	LSM10	98	71.074	ENSDARG00000101222	oscp1a	100	71.074	Danio_rerio
ENSSHAG00000018056	LSM10	99	84.426	ENSDNOG00000036662	LSM10	99	84.426	Dasypus_novemcinctus
ENSSHAG00000018056	LSM10	100	80.488	ENSDORG00000007579	Lsm10	100	80.488	Dipodomys_ordii
ENSSHAG00000018056	LSM10	100	80.488	ENSETEG00000005703	LSM10	100	80.488	Echinops_telfairi
ENSSHAG00000018056	LSM10	91	51.786	ENSEBUG00000001312	oscp1a	92	51.786	Eptatretus_burgeri
ENSSHAG00000018056	LSM10	100	83.740	ENSEASG00005012194	LSM10	100	83.740	Equus_asinus_asinus
ENSSHAG00000018056	LSM10	100	84.553	ENSECAG00000005071	LSM10	100	84.553	Equus_caballus
ENSSHAG00000018056	LSM10	100	82.927	ENSEEUG00000012032	LSM10	100	82.927	Erinaceus_europaeus
ENSSHAG00000018056	LSM10	98	72.727	ENSELUG00000007452	oscp1a	99	72.727	Esox_lucius
ENSSHAG00000018056	LSM10	100	78.862	ENSFALG00000000851	LSM10	100	78.862	Ficedula_albicollis
ENSSHAG00000018056	LSM10	100	82.927	ENSFDAG00000021056	LSM10	100	82.927	Fukomys_damarensis
ENSSHAG00000018056	LSM10	89	69.369	ENSFHEG00000001058	oscp1a	96	69.369	Fundulus_heteroclitus
ENSSHAG00000018056	LSM10	89	66.055	ENSGMOG00000019832	oscp1a	92	66.055	Gadus_morhua
ENSSHAG00000018056	LSM10	100	81.301	ENSGALG00000002127	LSM10	100	81.301	Gallus_gallus
ENSSHAG00000018056	LSM10	94	61.345	ENSGAFG00000016445	oscp1a	95	61.345	Gambusia_affinis
ENSSHAG00000018056	LSM10	97	65.546	ENSGACG00000002329	oscp1a	98	65.546	Gasterosteus_aculeatus
ENSSHAG00000018056	LSM10	100	78.862	ENSGAGG00000024848	LSM10	100	78.862	Gopherus_agassizii
ENSSHAG00000018056	LSM10	100	80.488	ENSGGOG00000003556	LSM10	100	80.488	Gorilla_gorilla
ENSSHAG00000018056	LSM10	96	70.339	ENSHBUG00000001722	oscp1a	96	70.339	Haplochromis_burtoni
ENSSHAG00000018056	LSM10	100	82.927	ENSHGLG00000011625	LSM10	100	82.927	Heterocephalus_glaber_female
ENSSHAG00000018056	LSM10	100	82.927	ENSHGLG00100001769	LSM10	100	82.927	Heterocephalus_glaber_male
ENSSHAG00000018056	LSM10	86	67.925	ENSIPUG00000005808	oscp1a	92	67.925	Ictalurus_punctatus
ENSSHAG00000018056	LSM10	100	83.740	ENSSTOG00000000606	LSM10	100	83.740	Ictidomys_tridecemlineatus
ENSSHAG00000018056	LSM10	96	69.492	ENSKMAG00000012143	oscp1a	98	69.492	Kryptolebias_marmoratus
ENSSHAG00000018056	LSM10	98	67.500	ENSLBEG00000017764	oscp1a	98	67.500	Labrus_bergylta
ENSSHAG00000018056	LSM10	100	72.358	ENSLACG00000015904	LSM10	95	72.358	Latimeria_chalumnae
ENSSHAG00000018056	LSM10	95	73.504	ENSLOCG00000018277	oscp1a	96	73.504	Lepisosteus_oculatus
ENSSHAG00000018056	LSM10	100	82.114	ENSLAFG00000009600	LSM10	100	82.114	Loxodonta_africana
ENSSHAG00000018056	LSM10	100	80.488	ENSMFAG00000009115	LSM10	100	80.488	Macaca_fascicularis
ENSSHAG00000018056	LSM10	100	80.488	ENSMMUG00000017338	LSM10	100	80.488	Macaca_mulatta
ENSSHAG00000018056	LSM10	100	80.488	ENSMNEG00000020023	LSM10	100	80.488	Macaca_nemestrina
ENSSHAG00000018056	LSM10	100	80.488	ENSMLEG00000025150	LSM10	100	80.488	Mandrillus_leucophaeus
ENSSHAG00000018056	LSM10	98	67.500	ENSMAMG00000004427	oscp1a	98	67.500	Mastacembelus_armatus
ENSSHAG00000018056	LSM10	96	70.339	ENSMZEG00005026307	oscp1a	96	70.339	Maylandia_zebra
ENSSHAG00000018056	LSM10	100	78.862	ENSMGAG00000015707	LSM10	100	78.862	Meleagris_gallopavo
ENSSHAG00000018056	LSM10	98	82.645	ENSMAUG00000016624	Lsm10	99	82.645	Mesocricetus_auratus
ENSSHAG00000018056	LSM10	98	81.818	ENSMOCG00000021943	Lsm10	99	81.818	Microtus_ochrogaster
ENSSHAG00000018056	LSM10	98	67.769	ENSMMOG00000013597	oscp1a	90	67.769	Mola_mola
ENSSHAG00000018056	LSM10	100	98.374	ENSMODG00000023328	LSM10	100	98.374	Monodelphis_domestica
ENSSHAG00000018056	LSM10	52	70.312	ENSMALG00000012661	oscp1a	50	70.312	Monopterus_albus
ENSSHAG00000018056	LSM10	98	81.818	MGP_CAROLIEiJ_G0026467	Lsm10	100	83.871	Mus_caroli
ENSSHAG00000018056	LSM10	98	82.645	ENSMUSG00000050188	Lsm10	100	84.946	Mus_musculus
ENSSHAG00000018056	LSM10	98	82.645	MGP_PahariEiJ_G0028798	Lsm10	100	84.946	Mus_pahari
ENSSHAG00000018056	LSM10	98	82.645	MGP_SPRETEiJ_G0027446	Lsm10	100	84.946	Mus_spretus
ENSSHAG00000018056	LSM10	100	85.366	ENSMPUG00000018593	LSM10	100	85.366	Mustela_putorius_furo
ENSSHAG00000018056	LSM10	100	80.488	ENSMLUG00000023895	LSM10	100	80.488	Myotis_lucifugus
ENSSHAG00000018056	LSM10	100	80.488	ENSNGAG00000015011	Lsm10	100	80.488	Nannospalax_galili
ENSSHAG00000018056	LSM10	97	70.588	ENSNBRG00000014306	oscp1a	97	70.588	Neolamprologus_brichardi
ENSSHAG00000018056	LSM10	100	80.488	ENSNLEG00000033754	LSM10	100	80.488	Nomascus_leucogenys
ENSSHAG00000018056	LSM10	100	99.187	ENSMEUG00000006313	LSM10	100	99.187	Notamacropus_eugenii
ENSSHAG00000018056	LSM10	100	83.740	ENSOPRG00000001699	LSM10	100	83.740	Ochotona_princeps
ENSSHAG00000018056	LSM10	100	84.553	ENSODEG00000019161	LSM10	100	84.553	Octodon_degus
ENSSHAG00000018056	LSM10	98	70.833	ENSONIG00000020904	oscp1a	98	70.833	Oreochromis_niloticus
ENSSHAG00000018056	LSM10	100	83.740	ENSOANG00000002066	LSM10	100	83.740	Ornithorhynchus_anatinus
ENSSHAG00000018056	LSM10	100	82.927	ENSOCUG00000005333	LSM10	100	82.927	Oryctolagus_cuniculus
ENSSHAG00000018056	LSM10	97	70.588	ENSORLG00000009504	oscp1a	98	70.588	Oryzias_latipes
ENSSHAG00000018056	LSM10	97	70.588	ENSORLG00020016201	oscp1a	98	70.588	Oryzias_latipes_hni
ENSSHAG00000018056	LSM10	97	68.908	ENSORLG00015007794	oscp1a	98	68.908	Oryzias_latipes_hsok
ENSSHAG00000018056	LSM10	100	82.927	ENSOGAG00000002653	LSM10	100	82.927	Otolemur_garnettii
ENSSHAG00000018056	LSM10	98	82.645	ENSOARG00000009596	LSM10	99	82.645	Ovis_aries
ENSSHAG00000018056	LSM10	100	80.488	ENSPPAG00000023465	LSM10	100	80.488	Pan_paniscus
ENSSHAG00000018056	LSM10	100	85.366	ENSPPRG00000014619	LSM10	100	85.366	Panthera_pardus
ENSSHAG00000018056	LSM10	100	85.366	ENSPTIG00000004613	LSM10	100	85.366	Panthera_tigris_altaica
ENSSHAG00000018056	LSM10	100	80.488	ENSPTRG00000000539	LSM10	100	80.488	Pan_troglodytes
ENSSHAG00000018056	LSM10	100	80.488	ENSPANG00000023172	LSM10	100	80.488	Papio_anubis
ENSSHAG00000018056	LSM10	95	70.085	ENSPKIG00000003728	oscp1a	94	70.085	Paramormyrops_kingsleyae
ENSSHAG00000018056	LSM10	100	78.862	ENSPSIG00000000590	LSM10	100	78.862	Pelodiscus_sinensis
ENSSHAG00000018056	LSM10	63	67.532	ENSPMGG00000015718	oscp1a	100	67.532	Periophthalmus_magnuspinnatus
ENSSHAG00000018056	LSM10	84	98.058	ENSPCIG00000014865	LSM10	76	98.058	Phascolarctos_cinereus
ENSSHAG00000018056	LSM10	94	68.103	ENSPFOG00000020490	oscp1a	98	68.103	Poecilia_formosa
ENSSHAG00000018056	LSM10	94	68.103	ENSPLAG00000016537	oscp1a	89	68.103	Poecilia_latipinna
ENSSHAG00000018056	LSM10	88	71.296	ENSPMEG00000000174	oscp1a	94	71.296	Poecilia_mexicana
ENSSHAG00000018056	LSM10	94	67.241	ENSPREG00000009899	oscp1a	89	67.241	Poecilia_reticulata
ENSSHAG00000018056	LSM10	100	80.488	ENSPPYG00000001539	LSM10	100	80.488	Pongo_abelii
ENSSHAG00000018056	LSM10	96	81.356	ENSPCAG00000002520	LSM10	97	81.356	Procavia_capensis
ENSSHAG00000018056	LSM10	100	82.927	ENSPVAG00000008644	LSM10	100	82.927	Pteropus_vampyrus
ENSSHAG00000018056	LSM10	96	70.339	ENSPNYG00000003138	oscp1a	96	70.339	Pundamilia_nyererei
ENSSHAG00000018056	LSM10	95	64.957	ENSPNAG00000028829	oscp1a	97	64.957	Pygocentrus_nattereri
ENSSHAG00000018056	LSM10	98	81.818	ENSRNOG00000025716	Lsm10	99	81.818	Rattus_norvegicus
ENSSHAG00000018056	LSM10	100	80.488	ENSRBIG00000001561	LSM10	100	80.488	Rhinopithecus_bieti
ENSSHAG00000018056	LSM10	100	80.488	ENSRROG00000011414	LSM10	100	80.488	Rhinopithecus_roxellana
ENSSHAG00000018056	LSM10	100	81.301	ENSSBOG00000036413	-	100	81.301	Saimiri_boliviensis_boliviensis
ENSSHAG00000018056	LSM10	98	68.595	ENSSFOG00015019954	lsm10	99	68.595	Scleropages_formosus
ENSSHAG00000018056	LSM10	93	67.826	ENSSMAG00000001297	oscp1a	98	67.826	Scophthalmus_maximus
ENSSHAG00000018056	LSM10	98	66.942	ENSSDUG00000007090	oscp1a	98	66.942	Seriola_dumerili
ENSSHAG00000018056	LSM10	94	68.103	ENSSLDG00000000800	oscp1a	96	68.103	Seriola_lalandi_dorsalis
ENSSHAG00000018056	LSM10	100	82.400	ENSSARG00000004211	LSM10	100	83.200	Sorex_araneus
ENSSHAG00000018056	LSM10	94	70.690	ENSSPAG00000009229	oscp1a	96	70.690	Stegastes_partitus
ENSSHAG00000018056	LSM10	100	81.301	ENSSSCG00000038916	LSM10	100	81.301	Sus_scrofa
ENSSHAG00000018056	LSM10	99	80.328	ENSTGUG00000001600	-	100	80.328	Taeniopygia_guttata
ENSSHAG00000018056	LSM10	99	79.508	ENSTGUG00000001602	-	100	79.508	Taeniopygia_guttata
ENSSHAG00000018056	LSM10	98	67.769	ENSTRUG00000010531	oscp1a	98	67.769	Takifugu_rubripes
ENSSHAG00000018056	LSM10	100	82.114	ENSTBEG00000016674	LSM10	100	82.114	Tupaia_belangeri
ENSSHAG00000018056	LSM10	100	83.740	ENSUAMG00000020265	LSM10	100	83.740	Ursus_americanus
ENSSHAG00000018056	LSM10	100	83.740	ENSUMAG00000001438	LSM10	57	83.740	Ursus_maritimus
ENSSHAG00000018056	LSM10	100	85.366	ENSVVUG00000023209	LSM10	100	85.366	Vulpes_vulpes
ENSSHAG00000018056	LSM10	100	69.919	ENSXETG00000027631	lsm10	100	69.919	Xenopus_tropicalis
ENSSHAG00000018056	LSM10	94	65.517	ENSXCOG00000018776	oscp1a	73	65.517	Xiphophorus_couchianus
ENSSHAG00000018056	LSM10	88	68.519	ENSXMAG00000019963	oscp1a	86	68.519	Xiphophorus_maculatus