EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000018062 (Gene tree)
Gene ID: 100922805
Gene Symbol: SSB
Alias: LARP3|La|La/SSB
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 9705 bases
Position: chrGL849632.1:3223133-3232837
Accession: 100922805
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000021309	RRM_1	PF00076.22	4.2e-17	1	1
ENSSHAP00000021309	RRM_3	PF08777.11	3.2e-31	1	1
ENSSHAP00000021309	La	PF05383.17	2.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000021482	SSB-201	1230	-	ENSSHAP00000021309	406 (aa)	XP_012400251	G3X0V4

Gene Model

Click here to download ENSSHAG00000018062's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000018062's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000018062	SSB	100	82.927	ENSG00000138385	SSB	100	86.667	Homo_sapiens
ENSSHAG00000018062	SSB	99	55.665	ENSAPOG00000003448	ssb	100	55.665	Acanthochromis_polyacanthus
ENSSHAG00000018062	SSB	100	80.285	ENSAMEG00000010507	SSB	100	77.381	Ailuropoda_melanoleuca
ENSSHAG00000018062	SSB	92	58.245	ENSACIG00000001738	ssb	97	58.245	Amphilophus_citrinellus
ENSSHAG00000018062	SSB	99	55.911	ENSAOCG00000020398	ssb	100	55.911	Amphiprion_ocellaris
ENSSHAG00000018062	SSB	99	56.158	ENSAPEG00000020395	ssb	100	56.158	Amphiprion_percula
ENSSHAG00000018062	SSB	99	58.867	ENSATEG00000016884	ssb	100	59.113	Anabas_testudineus
ENSSHAG00000018062	SSB	100	71.226	ENSAPLG00000006109	SSB	100	69.976	Anas_platyrhynchos
ENSSHAG00000018062	SSB	100	68.127	ENSACAG00000017008	SSB	99	66.910	Anolis_carolinensis
ENSSHAG00000018062	SSB	100	72.167	ENSANAG00000027195	-	100	72.660	Aotus_nancymaae
ENSSHAG00000018062	SSB	99	54.568	ENSACLG00000010798	ssb	100	54.321	Astatotilapia_calliptera
ENSSHAG00000018062	SSB	98	55.392	ENSAMXG00000012606	ssb	100	54.612	Astyanax_mexicanus
ENSSHAG00000018062	SSB	100	83.005	ENSBTAG00000008716	SSB	100	80.542	Bos_taurus
ENSSHAG00000018062	SSB	74	36.601	WBGene00016653	C44E4.4	77	37.255	Caenorhabditis_elegans
ENSSHAG00000018062	SSB	100	82.512	ENSCJAG00000045073	SSB	100	82.266	Callithrix_jacchus
ENSSHAG00000018062	SSB	100	83.292	ENSCAFG00000012418	SSB	100	81.572	Canis_familiaris
ENSSHAG00000018062	SSB	100	83.292	ENSCAFG00020002900	SSB	100	81.572	Canis_lupus_dingo
ENSSHAG00000018062	SSB	100	83.498	ENSCHIG00000022624	-	100	81.034	Capra_hircus
ENSSHAG00000018062	SSB	100	77.586	ENSCHIG00000022196	-	100	77.340	Capra_hircus
ENSSHAG00000018062	SSB	100	82.759	ENSTSYG00000000097	SSB	100	82.512	Carlito_syrichta
ENSSHAG00000018062	SSB	100	84.236	ENSCPOG00000003338	SSB	100	83.990	Cavia_porcellus
ENSSHAG00000018062	SSB	100	83.251	ENSCCAG00000035147	SSB	100	83.251	Cebus_capucinus
ENSSHAG00000018062	SSB	100	61.576	ENSCATG00000042909	-	100	61.330	Cercocebus_atys
ENSSHAG00000018062	SSB	72	82.474	ENSCATG00000036701	SSB	100	65.025	Cercocebus_atys
ENSSHAG00000018062	SSB	100	84.483	ENSCLAG00000015617	-	100	84.236	Chinchilla_lanigera
ENSSHAG00000018062	SSB	100	83.005	ENSCSAG00000015200	SSB	89	82.759	Chlorocebus_sabaeus
ENSSHAG00000018062	SSB	98	75.628	ENSCSAG00000018390	-	100	75.628	Chlorocebus_sabaeus
ENSSHAG00000018062	SSB	100	84.483	ENSCHOG00000007763	SSB	100	82.020	Choloepus_hoffmanni
ENSSHAG00000018062	SSB	100	79.024	ENSCPBG00000006519	SSB	100	78.049	Chrysemys_picta_bellii
ENSSHAG00000018062	SSB	100	82.759	ENSCANG00000027695	SSB	100	80.296	Colobus_angolensis_palliatus
ENSSHAG00000018062	SSB	96	65.641	ENSCANG00000028838	-	90	65.963	Colobus_angolensis_palliatus
ENSSHAG00000018062	SSB	100	70.443	ENSCANG00000033240	-	100	70.443	Colobus_angolensis_palliatus
ENSSHAG00000018062	SSB	100	70.976	ENSCGRG00001024831	Ssb	100	73.236	Cricetulus_griseus_chok1gshd
ENSSHAG00000018062	SSB	100	70.976	ENSCGRG00000005387	Ssb	100	73.236	Cricetulus_griseus_crigri
ENSSHAG00000018062	SSB	98	57.393	ENSCSEG00000011599	ssb	99	56.892	Cynoglossus_semilaevis
ENSSHAG00000018062	SSB	99	57.248	ENSCVAG00000021558	ssb	100	57.248	Cyprinodon_variegatus
ENSSHAG00000018062	SSB	98	57.320	ENSDARG00000029252	ssb	99	55.802	Danio_rerio
ENSSHAG00000018062	SSB	100	84.236	ENSDNOG00000013450	SSB	100	81.773	Dasypus_novemcinctus
ENSSHAG00000018062	SSB	100	74.696	ENSDORG00000005543	Ssb	100	74.696	Dipodomys_ordii
ENSSHAG00000018062	SSB	86	33.243	FBgn0011638	La	84	34.483	Drosophila_melanogaster
ENSSHAG00000018062	SSB	50	84.080	ENSETEG00000004614	-	52	84.080	Echinops_telfairi
ENSSHAG00000018062	SSB	96	46.547	ENSEBUG00000001237	ssb	92	48.747	Eptatretus_burgeri
ENSSHAG00000018062	SSB	100	83.498	ENSEASG00005022835	SSB	100	83.251	Equus_asinus_asinus
ENSSHAG00000018062	SSB	100	83.744	ENSECAG00000018495	SSB	100	83.498	Equus_caballus
ENSSHAG00000018062	SSB	75	68.301	ENSEEUG00000008077	SSB	78	68.301	Erinaceus_europaeus
ENSSHAG00000018062	SSB	99	60.591	ENSELUG00000020929	ssb	100	60.000	Esox_lucius
ENSSHAG00000018062	SSB	100	82.801	ENSFCAG00000011601	SSB	100	81.327	Felis_catus
ENSSHAG00000018062	SSB	100	74.817	ENSFALG00000000930	SSB	100	74.328	Ficedula_albicollis
ENSSHAG00000018062	SSB	100	83.498	ENSFDAG00000000598	SSB	100	83.251	Fukomys_damarensis
ENSSHAG00000018062	SSB	72	55.184	ENSFHEG00000003268	ssb	96	54.693	Fundulus_heteroclitus
ENSSHAG00000018062	SSB	97	55.446	ENSGMOG00000002664	ssb	99	55.446	Gadus_morhua
ENSSHAG00000018062	SSB	100	75.795	ENSGALG00000009677	SSB	100	73.350	Gallus_gallus
ENSSHAG00000018062	SSB	99	55.665	ENSGAFG00000002749	ssb	100	55.665	Gambusia_affinis
ENSSHAG00000018062	SSB	99	55.583	ENSGACG00000005107	ssb	100	54.612	Gasterosteus_aculeatus
ENSSHAG00000018062	SSB	100	78.293	ENSGAGG00000007807	SSB	100	77.317	Gopherus_agassizii
ENSSHAG00000018062	SSB	55	79.736	ENSGGOG00000023471	-	92	79.295	Gorilla_gorilla
ENSSHAG00000018062	SSB	100	67.980	ENSGGOG00000024891	-	100	65.764	Gorilla_gorilla
ENSSHAG00000018062	SSB	99	54.074	ENSHBUG00000006584	ssb	100	54.074	Haplochromis_burtoni
ENSSHAG00000018062	SSB	100	74.939	ENSHGLG00000005832	-	100	74.693	Heterocephalus_glaber_female
ENSSHAG00000018062	SSB	100	76.225	ENSHGLG00000004478	-	100	74.328	Heterocephalus_glaber_female
ENSSHAG00000018062	SSB	100	82.324	ENSHGLG00000017580	-	100	81.553	Heterocephalus_glaber_female
ENSSHAG00000018062	SSB	100	82.324	ENSHGLG00100003084	-	100	81.553	Heterocephalus_glaber_male
ENSSHAG00000018062	SSB	100	72.414	ENSHGLG00100008767	-	100	72.167	Heterocephalus_glaber_male
ENSSHAG00000018062	SSB	98	56.030	ENSHCOG00000019011	ssb	99	55.779	Hippocampus_comes
ENSSHAG00000018062	SSB	97	57.816	ENSIPUG00000003681	SSB	99	56.897	Ictalurus_punctatus
ENSSHAG00000018062	SSB	100	83.251	ENSSTOG00000008416	SSB	100	83.251	Ictidomys_tridecemlineatus
ENSSHAG00000018062	SSB	99	59.305	ENSJJAG00000016250	-	99	59.305	Jaculus_jaculus
ENSSHAG00000018062	SSB	100	69.811	ENSJJAG00000023158	-	100	67.612	Jaculus_jaculus
ENSSHAG00000018062	SSB	99	56.404	ENSKMAG00000017317	ssb	100	56.404	Kryptolebias_marmoratus
ENSSHAG00000018062	SSB	99	54.680	ENSLBEG00000017345	ssb	100	55.172	Labrus_bergylta
ENSSHAG00000018062	SSB	99	67.476	ENSLACG00000014056	SSB	99	68.627	Latimeria_chalumnae
ENSSHAG00000018062	SSB	98	66.334	ENSLOCG00000007933	ssb	99	65.586	Lepisosteus_oculatus
ENSSHAG00000018062	SSB	100	76.777	ENSLAFG00000000867	-	100	76.540	Loxodonta_africana
ENSSHAG00000018062	SSB	100	69.212	ENSLAFG00000028909	-	100	68.227	Loxodonta_africana
ENSSHAG00000018062	SSB	74	65.232	ENSLAFG00000026721	-	99	65.232	Loxodonta_africana
ENSSHAG00000018062	SSB	88	71.788	ENSMFAG00000041478	-	91	73.700	Macaca_fascicularis
ENSSHAG00000018062	SSB	100	82.759	ENSMFAG00000039066	SSB	100	82.512	Macaca_fascicularis
ENSSHAG00000018062	SSB	99	58.168	ENSMMUG00000039889	-	100	58.416	Macaca_mulatta
ENSSHAG00000018062	SSB	100	70.690	ENSMMUG00000011724	-	97	70.690	Macaca_mulatta
ENSSHAG00000018062	SSB	100	82.759	ENSMMUG00000023051	SSB	100	82.512	Macaca_mulatta
ENSSHAG00000018062	SSB	100	71.845	ENSMNEG00000028321	SSB	100	71.290	Macaca_nemestrina
ENSSHAG00000018062	SSB	88	71.788	ENSMNEG00000034698	-	91	73.700	Macaca_nemestrina
ENSSHAG00000018062	SSB	100	59.113	ENSMLEG00000042644	-	100	58.621	Mandrillus_leucophaeus
ENSSHAG00000018062	SSB	100	82.759	ENSMLEG00000035717	SSB	100	82.512	Mandrillus_leucophaeus
ENSSHAG00000018062	SSB	99	59.113	ENSMAMG00000004800	ssb	100	58.867	Mastacembelus_armatus
ENSSHAG00000018062	SSB	99	54.568	ENSMZEG00005005749	ssb	100	54.321	Maylandia_zebra
ENSSHAG00000018062	SSB	100	76.284	ENSMGAG00000010328	SSB	100	77.670	Meleagris_gallopavo
ENSSHAG00000018062	SSB	98	75.628	ENSMICG00000033304	-	93	79.178	Microcebus_murinus
ENSSHAG00000018062	SSB	99	83.416	ENSMICG00000028252	-	99	83.168	Microcebus_murinus
ENSSHAG00000018062	SSB	100	89.157	ENSMODG00000008227	-	100	89.157	Monodelphis_domestica
ENSSHAG00000018062	SSB	100	72.167	ENSMODG00000007027	-	100	70.690	Monodelphis_domestica
ENSSHAG00000018062	SSB	100	78.571	ENSMODG00000019271	-	100	64.390	Monodelphis_domestica
ENSSHAG00000018062	SSB	90	58.856	ENSMALG00000008045	ssb	90	58.824	Monopterus_albus
ENSSHAG00000018062	SSB	100	72.275	MGP_CAROLIEiJ_G0023629	-	100	83.696	Mus_caroli
ENSSHAG00000018062	SSB	100	71.801	ENSMUSG00000068882	Ssb	100	83.696	Mus_musculus
ENSSHAG00000018062	SSB	100	71.327	MGP_PahariEiJ_G0025081	-	100	83.152	Mus_pahari
ENSSHAG00000018062	SSB	100	71.801	MGP_SPRETEiJ_G0024551	Ssb	100	83.696	Mus_spretus
ENSSHAG00000018062	SSB	100	83.251	ENSMPUG00000000785	SSB	100	83.005	Mustela_putorius_furo
ENSSHAG00000018062	SSB	100	79.097	ENSMLUG00000016316	SSB	100	77.143	Myotis_lucifugus
ENSSHAG00000018062	SSB	99	55.062	ENSNBRG00000012661	ssb	100	54.321	Neolamprologus_brichardi
ENSSHAG00000018062	SSB	100	83.005	ENSNLEG00000004958	SSB	100	82.759	Nomascus_leucogenys
ENSSHAG00000018062	SSB	100	61.800	ENSNLEG00000028754	-	100	62.162	Nomascus_leucogenys
ENSSHAG00000018062	SSB	61	98.387	ENSMEUG00000001650	-	100	98.387	Notamacropus_eugenii
ENSSHAG00000018062	SSB	53	89.032	ENSOPRG00000008475	-	76	89.032	Ochotona_princeps
ENSSHAG00000018062	SSB	93	80.475	ENSODEG00000004202	-	100	79.947	Octodon_degus
ENSSHAG00000018062	SSB	99	54.815	ENSONIG00000008776	ssb	100	54.321	Oreochromis_niloticus
ENSSHAG00000018062	SSB	100	86.453	ENSOANG00000008543	SSB	100	86.453	Ornithorhynchus_anatinus
ENSSHAG00000018062	SSB	100	83.498	ENSOCUG00000010396	SSB	100	83.498	Oryctolagus_cuniculus
ENSSHAG00000018062	SSB	99	56.650	ENSORLG00000017208	ssb	100	55.774	Oryzias_latipes
ENSSHAG00000018062	SSB	99	56.650	ENSORLG00020022574	ssb	100	56.650	Oryzias_latipes_hni
ENSSHAG00000018062	SSB	99	56.897	ENSORLG00015016592	ssb	100	56.404	Oryzias_latipes_hsok
ENSSHAG00000018062	SSB	99	58.025	ENSOMEG00000003193	ssb	100	57.531	Oryzias_melastigma
ENSSHAG00000018062	SSB	100	78.014	ENSOGAG00000029768	SSB	100	76.777	Otolemur_garnettii
ENSSHAG00000018062	SSB	100	83.744	ENSOARG00000002906	SSB	100	81.281	Ovis_aries
ENSSHAG00000018062	SSB	100	82.927	ENSPPAG00000042673	SSB	100	82.683	Pan_paniscus
ENSSHAG00000018062	SSB	91	68.365	ENSPPAG00000006189	-	96	66.220	Pan_paniscus
ENSSHAG00000018062	SSB	100	67.241	ENSPPAG00000032427	-	100	74.419	Pan_paniscus
ENSSHAG00000018062	SSB	100	82.801	ENSPPRG00000006599	SSB	100	81.327	Panthera_pardus
ENSSHAG00000018062	SSB	100	82.555	ENSPTIG00000011021	SSB	97	81.081	Panthera_tigris_altaica
ENSSHAG00000018062	SSB	100	82.927	ENSPTRG00000012620	SSB	100	82.683	Pan_troglodytes
ENSSHAG00000018062	SSB	100	64.039	ENSPTRG00000042880	-	100	61.823	Pan_troglodytes
ENSSHAG00000018062	SSB	100	60.345	ENSPANG00000034126	-	100	60.345	Papio_anubis
ENSSHAG00000018062	SSB	98	57.960	ENSPANG00000031877	-	89	56.728	Papio_anubis
ENSSHAG00000018062	SSB	100	82.759	ENSPANG00000007440	SSB	100	82.512	Papio_anubis
ENSSHAG00000018062	SSB	99	61.975	ENSPKIG00000019325	ssb	99	61.481	Paramormyrops_kingsleyae
ENSSHAG00000018062	SSB	100	76.341	ENSPSIG00000002265	SSB	93	75.366	Pelodiscus_sinensis
ENSSHAG00000018062	SSB	85	54.728	ENSPMGG00000020075	ssb	93	55.014	Periophthalmus_magnuspinnatus
ENSSHAG00000018062	SSB	81	52.424	ENSPMAG00000002982	ssb	89	49.869	Petromyzon_marinus
ENSSHAG00000018062	SSB	100	97.537	ENSPCIG00000028591	-	100	97.537	Phascolarctos_cinereus
ENSSHAG00000018062	SSB	99	56.650	ENSPFOG00000009650	ssb	100	56.650	Poecilia_formosa
ENSSHAG00000018062	SSB	99	56.404	ENSPLAG00000020498	ssb	100	56.650	Poecilia_latipinna
ENSSHAG00000018062	SSB	99	56.404	ENSPMEG00000001051	ssb	100	56.404	Poecilia_mexicana
ENSSHAG00000018062	SSB	91	58.981	ENSPREG00000003708	ssb	97	58.981	Poecilia_reticulata
ENSSHAG00000018062	SSB	100	83.005	ENSPPYG00000012919	SSB	100	82.759	Pongo_abelii
ENSSHAG00000018062	SSB	95	78.906	ENSPCAG00000010276	SSB	100	78.906	Procavia_capensis
ENSSHAG00000018062	SSB	100	72.167	ENSPCOG00000023189	-	100	71.921	Propithecus_coquereli
ENSSHAG00000018062	SSB	100	80.542	ENSPCOG00000015741	-	100	80.296	Propithecus_coquereli
ENSSHAG00000018062	SSB	87	84.986	ENSPVAG00000006615	SSB	99	83.286	Pteropus_vampyrus
ENSSHAG00000018062	SSB	99	54.568	ENSPNYG00000006444	ssb	100	54.321	Pundamilia_nyererei
ENSSHAG00000018062	SSB	98	57.002	ENSPNAG00000011708	ssb	100	56.522	Pygocentrus_nattereri
ENSSHAG00000018062	SSB	100	71.564	ENSRNOG00000007998	Ssb	100	70.616	Rattus_norvegicus
ENSSHAG00000018062	SSB	100	72.127	ENSRNOG00000011606	AABR07061825.1	100	71.149	Rattus_norvegicus
ENSSHAG00000018062	SSB	100	60.442	ENSRBIG00000029918	-	100	58.231	Rhinopithecus_bieti
ENSSHAG00000018062	SSB	100	68.856	ENSRBIG00000041972	SSB	88	83.478	Rhinopithecus_bieti
ENSSHAG00000018062	SSB	89	75.758	ENSRBIG00000041608	-	98	73.278	Rhinopithecus_bieti
ENSSHAG00000018062	SSB	94	69.211	ENSRBIG00000041232	-	98	69.211	Rhinopithecus_bieti
ENSSHAG00000018062	SSB	97	75.689	ENSRROG00000034102	-	97	75.315	Rhinopithecus_roxellana
ENSSHAG00000018062	SSB	100	82.759	ENSRROG00000040346	SSB	100	80.296	Rhinopithecus_roxellana
ENSSHAG00000018062	SSB	98	69.773	ENSRROG00000031684	-	100	69.773	Rhinopithecus_roxellana
ENSSHAG00000018062	SSB	100	68.796	ENSRROG00000007149	-	100	66.585	Rhinopithecus_roxellana
ENSSHAG00000018062	SSB	100	83.251	ENSSBOG00000027204	SSB	100	83.005	Saimiri_boliviensis_boliviensis
ENSSHAG00000018062	SSB	99	63.814	ENSSFOG00015000550	ssb	100	63.325	Scleropages_formosus
ENSSHAG00000018062	SSB	98	54.750	ENSSMAG00000013885	ssb	99	58.556	Scophthalmus_maximus
ENSSHAG00000018062	SSB	99	58.128	ENSSDUG00000020117	ssb	100	57.882	Seriola_dumerili
ENSSHAG00000018062	SSB	99	55.693	ENSSLDG00000002525	ssb	100	55.941	Seriola_lalandi_dorsalis
ENSSHAG00000018062	SSB	95	75.260	ENSSARG00000007747	SSB	100	75.260	Sorex_araneus
ENSSHAG00000018062	SSB	100	77.941	ENSSPUG00000012112	SSB	100	76.716	Sphenodon_punctatus
ENSSHAG00000018062	SSB	99	55.665	ENSSPAG00000005696	ssb	100	55.665	Stegastes_partitus
ENSSHAG00000018062	SSB	98	70.352	ENSSSCG00000015938	SSB	92	72.507	Sus_scrofa
ENSSHAG00000018062	SSB	100	73.902	ENSTGUG00000007942	SSB	100	73.415	Taeniopygia_guttata
ENSSHAG00000018062	SSB	99	57.284	ENSTRUG00000017839	ssb	100	57.284	Takifugu_rubripes
ENSSHAG00000018062	SSB	90	58.537	ENSTNIG00000000915	ssb	100	57.181	Tetraodon_nigroviridis
ENSSHAG00000018062	SSB	83	83.478	ENSTBEG00000009056	SSB	82	83.478	Tupaia_belangeri
ENSSHAG00000018062	SSB	100	82.555	ENSTTRG00000002152	SSB	100	81.081	Tursiops_truncatus
ENSSHAG00000018062	SSB	93	84.392	ENSUAMG00000027833	SSB	99	84.127	Ursus_americanus
ENSSHAG00000018062	SSB	100	83.784	ENSUMAG00000013907	SSB	100	82.310	Ursus_maritimus
ENSSHAG00000018062	SSB	100	83.251	ENSVPAG00000007183	SSB	100	82.512	Vicugna_pacos
ENSSHAG00000018062	SSB	100	83.292	ENSVVUG00000016573	SSB	78	81.572	Vulpes_vulpes
ENSSHAG00000018062	SSB	100	59.302	ENSXETG00000025402	ssb	87	64.595	Xenopus_tropicalis
ENSSHAG00000018062	SSB	94	55.875	ENSXCOG00000019109	ssb	98	56.533	Xiphophorus_couchianus
ENSSHAG00000018062	SSB	99	56.158	ENSXMAG00000004888	ssb	100	56.158	Xiphophorus_maculatus