EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSHAG00000018139 (Gene tree)
Gene ID
100933306
Gene Symbol
PABPC4
Alias
APP-1|iPABP
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Sarcophilus_harrisii
Status
putative
Strand
Minus strand
Length
16782 bases
Position
chrGL849783.1:3289313-3306094
Accession
100933306
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSHAP00000021405PABPPF00658.182.1e-3111
ENSSHAP00000021405RRM_5PF13893.61.3e-0912
ENSSHAP00000021405RRM_5PF13893.61.3e-0922
ENSSHAP00000021405RRM_1PF00076.227.3e-9114
ENSSHAP00000021405RRM_1PF00076.227.3e-9124
ENSSHAP00000021405RRM_1PF00076.227.3e-9134
ENSSHAP00000021405RRM_1PF00076.227.3e-9144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSHAT00000021578PABPC4-2012499XM_003765386ENSSHAP00000021405630 (aa)XP_003765434G3X150
Gene Model
Click here to download ENSSHAG00000018139's gene model file
Pathways
Pathway IDPathway NameSource
shr03013RNA transportKEGG
shr03015mRNA surveillance pathwayKEGG
shr03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000018139's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSHAG00000018139PABPC45336.145ENSSHAG00000006756ELAVL26436.145
ENSSHAG00000018139PABPC45440.984ENSSHAG00000015609-7030.667
ENSSHAG00000018139PABPC49762.276ENSSHAG00000000511-9961.951
ENSSHAG00000018139PABPC49977.971ENSSHAG00000003431-9877.796
ENSSHAG00000018139PABPC46030.000ENSSHAG00000005583ELAVL38630.000
ENSSHAG00000018139PABPC49875.393ENSSHAG00000011267PABPC19775.401
ENSSHAG00000018139PABPC49761.741ENSSHAG00000011446PABPC1L9961.741
ENSSHAG00000018139PABPC45834.940ENSSHAG00000013832-8834.940
ENSSHAG00000018139PABPC45833.775ENSSHAG00000008109ELAVL19533.775
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSHAG00000018139PABPC410092.063ENSG00000090621PABPC410099.225Homo_sapiens
ENSSHAG00000018139PABPC49986.486ENSAPOG00000001161pabpc49787.319Acanthochromis_polyacanthus
ENSSHAG00000018139PABPC49953.537ENSAMEG00000015083-9753.682Ailuropoda_melanoleuca
ENSSHAG00000018139PABPC410087.709ENSAMEG00000011535-9888.099Ailuropoda_melanoleuca
ENSSHAG00000018139PABPC410086.142ENSACIG00000023343pabpc49787.480Amphilophus_citrinellus
ENSSHAG00000018139PABPC49986.328ENSAOCG00000021529pabpc49787.159Amphiprion_ocellaris
ENSSHAG00000018139PABPC49986.328ENSAPEG00000019196pabpc49787.159Amphiprion_percula
ENSSHAG00000018139PABPC49986.032ENSATEG00000007402pabpc49786.859Anabas_testudineus
ENSSHAG00000018139PABPC410093.333ENSAPLG00000009729-10093.333Anas_platyrhynchos
ENSSHAG00000018139PABPC49991.950ENSACAG00000002544PABPC410091.950Anolis_carolinensis
ENSSHAG00000018139PABPC410092.063ENSANAG00000025079PABPC49892.557Aotus_nancymaae
ENSSHAG00000018139PABPC410085.984ENSACLG00000019558pabpc49787.319Astatotilapia_calliptera
ENSSHAG00000018139PABPC410079.968ENSAMXG00000018779pabpc49881.029Astyanax_mexicanus
ENSSHAG00000018139PABPC410088.199ENSBTAG00000017125PABPC49889.082Bos_taurus
ENSSHAG00000018139PABPC45785.629ENSBTAG00000048536-9385.629Bos_taurus
ENSSHAG00000018139PABPC47883.197ENSCJAG00000045953-9383.197Callithrix_jacchus
ENSSHAG00000018139PABPC410091.905ENSCJAG00000002512-9892.395Callithrix_jacchus
ENSSHAG00000018139PABPC410091.905ENSCAFG00000003081PABPC49892.395Canis_familiaris
ENSSHAG00000018139PABPC49692.371ENSCAFG00020004161PABPC49888.253Canis_lupus_dingo
ENSSHAG00000018139PABPC410069.673ENSCHIG00000023385-9869.889Capra_hircus
ENSSHAG00000018139PABPC410087.860ENSCHIG00000019398-9888.253Capra_hircus
ENSSHAG00000018139PABPC410092.222ENSTSYG00000006532PABPC49892.718Carlito_syrichta
ENSSHAG00000018139PABPC49992.026ENSCAPG00000015984PABPC49892.370Cavia_aperea
ENSSHAG00000018139PABPC410092.222ENSCPOG00000009552PABPC49892.718Cavia_porcellus
ENSSHAG00000018139PABPC410091.905ENSCCAG00000037306PABPC49892.395Cebus_capucinus
ENSSHAG00000018139PABPC410092.222ENSCATG00000042164PABPC49892.718Cercocebus_atys
ENSSHAG00000018139PABPC410092.063ENSCLAG00000011899PABPC49892.557Chinchilla_lanigera
ENSSHAG00000018139PABPC410088.164ENSCSAG00000001135PABPC49888.563Chlorocebus_sabaeus
ENSSHAG00000018139PABPC48691.293ENSCHOG00000005327PABPC47991.293Choloepus_hoffmanni
ENSSHAG00000018139PABPC410094.286ENSCPBG00000001038PABPC410094.286Chrysemys_picta_bellii
ENSSHAG00000018139PABPC49992.110ENSCANG00000034177PABPC49892.611Colobus_angolensis_palliatus
ENSSHAG00000018139PABPC49989.550ENSCGRG00001018166Pabpc49789.806Cricetulus_griseus_chok1gshd
ENSSHAG00000018139PABPC49889.560ENSCGRG00000009777Pabpc49789.819Cricetulus_griseus_crigri
ENSSHAG00000018139PABPC49985.016ENSCSEG00000000130pabpc49786.196Cynoglossus_semilaevis
ENSSHAG00000018139PABPC49986.422ENSCVAG00000019246pabpc49887.785Cyprinodon_variegatus
ENSSHAG00000018139PABPC49985.895ENSDARG00000059259pabpc410086.678Danio_rerio
ENSSHAG00000018139PABPC49991.413ENSDNOG00000018444-9891.956Dasypus_novemcinctus
ENSSHAG00000018139PABPC410088.958ENSDORG00000011581Pabpc49889.382Dipodomys_ordii
ENSSHAG00000018139PABPC48759.158ENSETEG00000009172-9759.176Echinops_telfairi
ENSSHAG00000018139PABPC410098.438ENSETEG00000018453-8298.438Echinops_telfairi
ENSSHAG00000018139PABPC49977.229ENSEBUG00000000992pabpc49977.047Eptatretus_burgeri
ENSSHAG00000018139PABPC49778.837ENSEBUG00000013782pabpc49878.652Eptatretus_burgeri
ENSSHAG00000018139PABPC410088.164ENSEASG00005014119PABPC49888.563Equus_asinus_asinus
ENSSHAG00000018139PABPC410088.164ENSECAG00000009396PABPC49888.563Equus_caballus
ENSSHAG00000018139PABPC49886.399ENSEEUG00000002962PABPC49886.399Erinaceus_europaeus
ENSSHAG00000018139PABPC49985.578ENSELUG00000003195pabpc49786.400Esox_lucius
ENSSHAG00000018139PABPC410091.905ENSFCAG00000015254-9892.395Felis_catus
ENSSHAG00000018139PABPC410092.857ENSFALG00000000543PABPC410092.857Ficedula_albicollis
ENSSHAG00000018139PABPC410088.164ENSFDAG00000020016-9888.563Fukomys_damarensis
ENSSHAG00000018139PABPC49058.422ENSFDAG00000010581-9854.717Fukomys_damarensis
ENSSHAG00000018139PABPC410086.142ENSFHEG00000007548pabpc49787.640Fundulus_heteroclitus
ENSSHAG00000018139PABPC410083.491ENSGMOG00000019025pabpc49784.936Gadus_morhua
ENSSHAG00000018139PABPC410093.651ENSGALG00000003800PABPC410093.651Gallus_gallus
ENSSHAG00000018139PABPC49994.340ENSGAFG00000018195pabpc49896.667Gambusia_affinis
ENSSHAG00000018139PABPC49984.069ENSGACG00000007179pabpc49785.393Gasterosteus_aculeatus
ENSSHAG00000018139PABPC410093.968ENSGAGG00000001888PABPC410093.968Gopherus_agassizii
ENSSHAG00000018139PABPC410092.063ENSGGOG00000004002PABPC49892.557Gorilla_gorilla
ENSSHAG00000018139PABPC410086.142ENSHBUG00000020206pabpc49787.480Haplochromis_burtoni
ENSSHAG00000018139PABPC410092.063ENSHGLG00000011162PABPC49892.557Heterocephalus_glaber_female
ENSSHAG00000018139PABPC410092.063ENSHGLG00100001580PABPC49892.557Heterocephalus_glaber_male
ENSSHAG00000018139PABPC49985.624ENSHCOG00000012694pabpc49786.977Hippocampus_comes
ENSSHAG00000018139PABPC49885.393ENSIPUG00000016620pabpc49886.035Ictalurus_punctatus
ENSSHAG00000018139PABPC410090.159ENSSTOG00000010416PABPC49890.615Ictidomys_tridecemlineatus
ENSSHAG00000018139PABPC410086.625ENSJJAG00000007781Pabpc49887.639Jaculus_jaculus
ENSSHAG00000018139PABPC410084.906ENSKMAG00000013597pabpc49786.538Kryptolebias_marmoratus
ENSSHAG00000018139PABPC410085.086ENSLBEG00000013654pabpc49786.400Labrus_bergylta
ENSSHAG00000018139PABPC410090.852ENSLACG00000011907PABPC410090.852Latimeria_chalumnae
ENSSHAG00000018139PABPC410088.088ENSLOCG00000001877pabpc49889.263Lepisosteus_oculatus
ENSSHAG00000018139PABPC410089.841ENSLAFG00000000151PABPC49890.291Loxodonta_africana
ENSSHAG00000018139PABPC410092.222ENSMFAG00000041481PABPC49892.718Macaca_fascicularis
ENSSHAG00000018139PABPC410088.164ENSMMUG00000007497PABPC49888.563Macaca_mulatta
ENSSHAG00000018139PABPC410092.222ENSMNEG00000043054PABPC49892.718Macaca_nemestrina
ENSSHAG00000018139PABPC410092.222ENSMLEG00000040716PABPC49892.718Mandrillus_leucophaeus
ENSSHAG00000018139PABPC49985.692ENSMAMG00000010025pabpc49886.469Mastacembelus_armatus
ENSSHAG00000018139PABPC410085.827ENSMZEG00005006141pabpc49787.159Maylandia_zebra
ENSSHAG00000018139PABPC49989.779ENSMGAG00000005408PABPC410089.779Meleagris_gallopavo
ENSSHAG00000018139PABPC49976.687ENSMAUG00000019763-9676.687Mesocricetus_auratus
ENSSHAG00000018139PABPC47283.654ENSMAUG00000001295-9783.654Mesocricetus_auratus
ENSSHAG00000018139PABPC45782.036ENSMAUG00000004089-8982.036Mesocricetus_auratus
ENSSHAG00000018139PABPC49975.623ENSMICG00000036729-9778.909Microcebus_murinus
ENSSHAG00000018139PABPC48989.324ENSMICG00000016633-10089.858Microcebus_murinus
ENSSHAG00000018139PABPC49991.680ENSMOCG00000006763Pabpc49791.909Microtus_ochrogaster
ENSSHAG00000018139PABPC410083.019ENSMMOG00000002363pabpc49785.209Mola_mola
ENSSHAG00000018139PABPC45977.401ENSMODG00000018051-9177.401Monodelphis_domestica
ENSSHAG00000018139PABPC410095.274ENSMODG00000017657-10095.274Monodelphis_domestica
ENSSHAG00000018139PABPC49985.420ENSMALG00000011017pabpc49786.240Monopterus_albus
ENSSHAG00000018139PABPC49976.265MGP_CAROLIEiJ_G0024864-9876.471Mus_caroli
ENSSHAG00000018139PABPC410086.950MGP_CAROLIEiJ_G0026435-10097.872Mus_caroli
ENSSHAG00000018139PABPC410091.111ENSMUSG00000011257Pabpc410097.619Mus_musculus
ENSSHAG00000018139PABPC49987.231MGP_PahariEiJ_G0028765Pabpc410098.582Mus_pahari
ENSSHAG00000018139PABPC49972.123MGP_SPRETEiJ_G0027415Pabpc410097.872Mus_spretus
ENSSHAG00000018139PABPC49549.338ENSMPUG00000006836-10049.338Mustela_putorius_furo
ENSSHAG00000018139PABPC410087.860ENSMPUG00000014414-9888.253Mustela_putorius_furo
ENSSHAG00000018139PABPC410089.841ENSMLUG00000012068PABPC49890.291Myotis_lucifugus
ENSSHAG00000018139PABPC410089.841ENSNGAG00000018292Pabpc49890.291Nannospalax_galili
ENSSHAG00000018139PABPC46096.635ENSNBRG00000009708pabpc49896.635Neolamprologus_brichardi
ENSSHAG00000018139PABPC46592.216ENSNBRG00000010047-7292.216Neolamprologus_brichardi
ENSSHAG00000018139PABPC410092.222ENSNLEG00000011928PABPC49892.718Nomascus_leucogenys
ENSSHAG00000018139PABPC48595.238ENSOPRG00000011984PABPC48795.238Ochotona_princeps
ENSSHAG00000018139PABPC49980.761ENSODEG00000017434-9781.128Octodon_degus
ENSSHAG00000018139PABPC410091.587ENSODEG00000006592-9892.071Octodon_degus
ENSSHAG00000018139PABPC45384.286ENSODEG00000013457-10084.286Octodon_degus
ENSSHAG00000018139PABPC410085.669ENSONIG00000008176pabpc49786.998Oreochromis_niloticus
ENSSHAG00000018139PABPC410094.127ENSOANG00000010001PABPC410094.127Ornithorhynchus_anatinus
ENSSHAG00000018139PABPC49688.133ENSOCUG00000000562PABPC48888.133Oryctolagus_cuniculus
ENSSHAG00000018139PABPC49994.136ENSORLG00000017479pabpc49693.846Oryzias_latipes
ENSSHAG00000018139PABPC49994.136ENSORLG00020018644pabpc49694.136Oryzias_latipes_hni
ENSSHAG00000018139PABPC49994.136ENSORLG00015015042pabpc49694.136Oryzias_latipes_hsok
ENSSHAG00000018139PABPC49985.692ENSOMEG00000014410pabpc49786.356Oryzias_melastigma
ENSSHAG00000018139PABPC410088.390ENSOGAG00000004067PABPC49889.274Otolemur_garnettii
ENSSHAG00000018139PABPC410087.860ENSOARG00000020060PABPC49888.253Ovis_aries
ENSSHAG00000018139PABPC410092.063ENSPPAG00000043625PABPC49892.557Pan_paniscus
ENSSHAG00000018139PABPC410091.905ENSPPRG00000024727PABPC49892.395Panthera_pardus
ENSSHAG00000018139PABPC410091.905ENSPTIG00000005829PABPC49892.395Panthera_tigris_altaica
ENSSHAG00000018139PABPC410092.063ENSPTRG00000000573PABPC49892.557Pan_troglodytes
ENSSHAG00000018139PABPC410092.063ENSPANG00000009484PABPC49892.557Papio_anubis
ENSSHAG00000018139PABPC49986.909ENSPKIG00000025356pabpc49987.439Paramormyrops_kingsleyae
ENSSHAG00000018139PABPC410094.603ENSPSIG00000016892PABPC410094.603Pelodiscus_sinensis
ENSSHAG00000018139PABPC410083.123ENSPMGG00000009073pabpc49783.923Periophthalmus_magnuspinnatus
ENSSHAG00000018139PABPC49986.212ENSPEMG00000024193-9786.591Peromyscus_maniculatus_bairdii
ENSSHAG00000018139PABPC410090.476ENSPEMG00000023569-9890.939Peromyscus_maniculatus_bairdii
ENSSHAG00000018139PABPC49771.984ENSPMAG00000007885pabpc49871.805Petromyzon_marinus
ENSSHAG00000018139PABPC48974.870ENSPMAG00000002836pabpc410075.563Petromyzon_marinus
ENSSHAG00000018139PABPC410099.841ENSPCIG00000020674PABPC410099.841Phascolarctos_cinereus
ENSSHAG00000018139PABPC410085.354ENSPFOG00000002682pabpc49787.319Poecilia_formosa
ENSSHAG00000018139PABPC410085.512ENSPLAG00000010112pabpc49787.480Poecilia_latipinna
ENSSHAG00000018139PABPC49986.010ENSPMEG00000019739pabpc49787.319Poecilia_mexicana
ENSSHAG00000018139PABPC410086.142ENSPREG00000001589pabpc49787.480Poecilia_reticulata
ENSSHAG00000018139PABPC410088.012ENSPPYG00000001506PABPC49888.408Pongo_abelii
ENSSHAG00000018139PABPC410083.005ENSPCAG00000003341PABPC49883.308Procavia_capensis
ENSSHAG00000018139PABPC410091.601ENSPCOG00000023725-9892.569Propithecus_coquereli
ENSSHAG00000018139PABPC49971.296ENSPCOG00000025882-9871.528Propithecus_coquereli
ENSSHAG00000018139PABPC49987.037ENSPVAG00000002187PABPC49887.457Pteropus_vampyrus
ENSSHAG00000018139PABPC410085.984ENSPNYG00000006134pabpc49787.319Pundamilia_nyererei
ENSSHAG00000018139PABPC410084.820ENSPNAG00000024355pabpc49886.058Pygocentrus_nattereri
ENSSHAG00000018139PABPC410088.336ENSRNOG00000015642Pabpc49888.748Rattus_norvegicus
ENSSHAG00000018139PABPC410086.159ENSRNOG00000028592AABR07035074.19886.529Rattus_norvegicus
ENSSHAG00000018139PABPC410092.222ENSRBIG00000039761PABPC49892.718Rhinopithecus_bieti
ENSSHAG00000018139PABPC410092.222ENSRROG00000033355PABPC49892.718Rhinopithecus_roxellana
ENSSHAG00000018139PABPC410091.746ENSSBOG00000026193PABPC49892.233Saimiri_boliviensis_boliviensis
ENSSHAG00000018139PABPC49987.993ENSSFOG00015023514pabpc49788.294Scleropages_formosus
ENSSHAG00000018139PABPC49985.285ENSSMAG00000009007pabpc49786.356Scophthalmus_maximus
ENSSHAG00000018139PABPC49986.010ENSSDUG00000012683pabpc49786.838Seriola_dumerili
ENSSHAG00000018139PABPC49986.010ENSSLDG00000013025pabpc49786.838Seriola_lalandi_dorsalis
ENSSHAG00000018139PABPC410081.184ENSSARG00000000310PABPC49881.453Sorex_araneus
ENSSHAG00000018139PABPC410092.540ENSSPUG00000003204PABPC410092.540Sphenodon_punctatus
ENSSHAG00000018139PABPC49985.851ENSSPAG00000009252pabpc49786.677Stegastes_partitus
ENSSHAG00000018139PABPC48944.810ENSSSCG00000036170-9344.425Sus_scrofa
ENSSHAG00000018139PABPC410092.222ENSSSCG00000003660-9892.718Sus_scrofa
ENSSHAG00000018139PABPC410088.805ENSTGUG00000001266PABPC410088.805Taeniopygia_guttata
ENSSHAG00000018139PABPC49985.285ENSTRUG00000005907pabpc49786.517Takifugu_rubripes
ENSSHAG00000018139PABPC49981.034ENSTNIG00000016902pabpc49781.558Tetraodon_nigroviridis
ENSSHAG00000018139PABPC49977.441ENSTBEG00000009035PABPC49877.663Tupaia_belangeri
ENSSHAG00000018139PABPC49971.401ENSTTRG00000014340PABPC49876.117Tursiops_truncatus
ENSSHAG00000018139PABPC410091.905ENSUAMG00000000303PABPC49892.395Ursus_americanus
ENSSHAG00000018139PABPC410091.892ENSUMAG00000019585PABPC49891.892Ursus_maritimus
ENSSHAG00000018139PABPC47973.451ENSVPAG00000010041PABPC47373.451Vicugna_pacos
ENSSHAG00000018139PABPC410091.905ENSVVUG00000005215PABPC49892.395Vulpes_vulpes
ENSSHAG00000018139PABPC46198.810ENSXETG00000027221-10098.810Xenopus_tropicalis
ENSSHAG00000018139PABPC410086.349ENSXETG00000010946pabpc410086.349Xenopus_tropicalis
ENSSHAG00000018139PABPC49992.987ENSXCOG00000013190pabpc49693.868Xiphophorus_couchianus
ENSSHAG00000018139PABPC410085.984ENSXMAG00000019007pabpc49787.319Xiphophorus_maculatus

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