EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000018219 (Gene tree)
Gene ID: 100930210
Gene Symbol: EXOSC1
Alias: CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13
Full Name: exosome component 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 3578 bases
Position: chrGL834452.1:3358077-3361654
Accession: 17286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000021507	EXOSC1	PF10447.9	1.6e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000021680	EXOSC1-201	528	-	ENSSHAP00000021507	147 (aa)	-	G3X1F2

Gene Model

Click here to download ENSSHAG00000018219's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000018219's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000018219	EXOSC1	100	95.238	ENSG00000171311	EXOSC1	75	95.238	Homo_sapiens
ENSSHAG00000018219	EXOSC1	100	89.116	ENSAPOG00000007822	exosc1	75	89.116	Acanthochromis_polyacanthus
ENSSHAG00000018219	EXOSC1	100	95.918	ENSAMEG00000000129	EXOSC1	75	95.918	Ailuropoda_melanoleuca
ENSSHAG00000018219	EXOSC1	99	88.356	ENSACIG00000018956	exosc1	71	88.356	Amphilophus_citrinellus
ENSSHAG00000018219	EXOSC1	99	89.726	ENSAOCG00000010699	exosc1	75	89.726	Amphiprion_ocellaris
ENSSHAG00000018219	EXOSC1	99	76.027	ENSAPEG00000012690	exosc1	76	76.027	Amphiprion_percula
ENSSHAG00000018219	EXOSC1	99	89.041	ENSATEG00000018683	exosc1	75	89.041	Anabas_testudineus
ENSSHAG00000018219	EXOSC1	100	87.075	ENSACAG00000002101	EXOSC1	75	87.075	Anolis_carolinensis
ENSSHAG00000018219	EXOSC1	100	96.599	ENSANAG00000034669	EXOSC1	75	96.599	Aotus_nancymaae
ENSSHAG00000018219	EXOSC1	99	89.041	ENSACLG00000021243	exosc1	75	89.041	Astatotilapia_calliptera
ENSSHAG00000018219	EXOSC1	99	89.726	ENSAMXG00000011116	exosc1	75	89.726	Astyanax_mexicanus
ENSSHAG00000018219	EXOSC1	100	95.918	ENSBTAG00000012699	EXOSC1	75	95.918	Bos_taurus
ENSSHAG00000018219	EXOSC1	94	35.211	WBGene00012966	exos-1	68	35.211	Caenorhabditis_elegans
ENSSHAG00000018219	EXOSC1	100	95.918	ENSCJAG00000016586	EXOSC1	75	95.918	Callithrix_jacchus
ENSSHAG00000018219	EXOSC1	100	96.599	ENSCAFG00000009068	EXOSC1	71	96.599	Canis_familiaris
ENSSHAG00000018219	EXOSC1	100	96.599	ENSCAFG00020006002	EXOSC1	71	96.599	Canis_lupus_dingo
ENSSHAG00000018219	EXOSC1	100	95.918	ENSCHIG00000015253	EXOSC1	75	95.918	Capra_hircus
ENSSHAG00000018219	EXOSC1	100	95.238	ENSTSYG00000000760	EXOSC1	75	95.238	Carlito_syrichta
ENSSHAG00000018219	EXOSC1	100	96.599	ENSCPOG00000001173	EXOSC1	75	96.599	Cavia_porcellus
ENSSHAG00000018219	EXOSC1	97	42.759	ENSCCAG00000023986	EXOSC1	69	42.759	Cebus_capucinus
ENSSHAG00000018219	EXOSC1	100	95.238	ENSCATG00000034114	EXOSC1	75	95.238	Cercocebus_atys
ENSSHAG00000018219	EXOSC1	100	96.599	ENSCLAG00000002463	EXOSC1	75	96.599	Chinchilla_lanigera
ENSSHAG00000018219	EXOSC1	100	94.558	ENSCSAG00000005870	EXOSC1	75	94.558	Chlorocebus_sabaeus
ENSSHAG00000018219	EXOSC1	78	96.491	ENSCHOG00000006477	EXOSC1	60	96.491	Choloepus_hoffmanni
ENSSHAG00000018219	EXOSC1	99	56.552	ENSCING00000022734	-	69	56.552	Ciona_intestinalis
ENSSHAG00000018219	EXOSC1	99	57.241	ENSCSAVG00000010865	-	73	57.241	Ciona_savignyi
ENSSHAG00000018219	EXOSC1	100	95.238	ENSCANG00000034159	EXOSC1	75	95.238	Colobus_angolensis_palliatus
ENSSHAG00000018219	EXOSC1	100	94.558	ENSCGRG00001000335	Exosc1	75	94.558	Cricetulus_griseus_chok1gshd
ENSSHAG00000018219	EXOSC1	100	94.558	ENSCGRG00000011602	Exosc1	75	94.558	Cricetulus_griseus_crigri
ENSSHAG00000018219	EXOSC1	83	88.525	ENSCSEG00000007895	exosc1	69	88.525	Cynoglossus_semilaevis
ENSSHAG00000018219	EXOSC1	100	82.993	ENSCVAG00000016748	exosc1	75	82.993	Cyprinodon_variegatus
ENSSHAG00000018219	EXOSC1	99	88.356	ENSDARG00000059841	exosc1	75	88.356	Danio_rerio
ENSSHAG00000018219	EXOSC1	67	96.939	ENSDNOG00000007983	EXOSC1	66	96.939	Dasypus_novemcinctus
ENSSHAG00000018219	EXOSC1	100	96.599	ENSDORG00000016528	Exosc1	75	96.599	Dipodomys_ordii
ENSSHAG00000018219	EXOSC1	96	52.083	FBgn0032346	Csl4	70	52.083	Drosophila_melanogaster
ENSSHAG00000018219	EXOSC1	100	93.878	ENSETEG00000002469	-	75	93.878	Echinops_telfairi
ENSSHAG00000018219	EXOSC1	100	68.027	ENSEBUG00000008164	exosc1	73	68.027	Eptatretus_burgeri
ENSSHAG00000018219	EXOSC1	93	90.441	ENSEASG00005008684	EXOSC1	71	90.441	Equus_asinus_asinus
ENSSHAG00000018219	EXOSC1	100	95.918	ENSEEUG00000005647	EXOSC1	75	95.918	Erinaceus_europaeus
ENSSHAG00000018219	EXOSC1	99	88.966	ENSELUG00000017369	exosc1	64	88.966	Esox_lucius
ENSSHAG00000018219	EXOSC1	100	95.918	ENSFCAG00000040563	EXOSC1	71	98.361	Felis_catus
ENSSHAG00000018219	EXOSC1	100	87.755	ENSFALG00000008450	EXOSC1	75	87.755	Ficedula_albicollis
ENSSHAG00000018219	EXOSC1	100	96.599	ENSFDAG00000000846	EXOSC1	75	96.599	Fukomys_damarensis
ENSSHAG00000018219	EXOSC1	100	83.673	ENSFHEG00000009154	exosc1	75	83.673	Fundulus_heteroclitus
ENSSHAG00000018219	EXOSC1	99	89.041	ENSGMOG00000008993	exosc1	75	89.041	Gadus_morhua
ENSSHAG00000018219	EXOSC1	100	85.714	ENSGALG00000039917	EXOSC1	100	85.714	Gallus_gallus
ENSSHAG00000018219	EXOSC1	100	82.993	ENSGAFG00000010265	exosc1	72	82.993	Gambusia_affinis
ENSSHAG00000018219	EXOSC1	99	87.671	ENSGACG00000018936	exosc1	75	87.671	Gasterosteus_aculeatus
ENSSHAG00000018219	EXOSC1	100	87.755	ENSGAGG00000019192	EXOSC1	75	87.755	Gopherus_agassizii
ENSSHAG00000018219	EXOSC1	83	96.721	ENSGGOG00000003099	EXOSC1	71	96.721	Gorilla_gorilla
ENSSHAG00000018219	EXOSC1	99	89.041	ENSHBUG00000017857	exosc1	76	89.041	Haplochromis_burtoni
ENSSHAG00000018219	EXOSC1	100	95.918	ENSHGLG00000016927	EXOSC1	75	95.918	Heterocephalus_glaber_female
ENSSHAG00000018219	EXOSC1	100	95.918	ENSHGLG00100012208	EXOSC1	75	95.918	Heterocephalus_glaber_male
ENSSHAG00000018219	EXOSC1	99	86.986	ENSHCOG00000019882	exosc1	75	86.986	Hippocampus_comes
ENSSHAG00000018219	EXOSC1	99	89.726	ENSIPUG00000007685	exosc1	75	89.726	Ictalurus_punctatus
ENSSHAG00000018219	EXOSC1	100	97.279	ENSSTOG00000006615	EXOSC1	75	97.279	Ictidomys_tridecemlineatus
ENSSHAG00000018219	EXOSC1	50	84.932	ENSSTOG00000029860	-	60	84.932	Ictidomys_tridecemlineatus
ENSSHAG00000018219	EXOSC1	100	95.238	ENSJJAG00000013311	Exosc1	75	95.238	Jaculus_jaculus
ENSSHAG00000018219	EXOSC1	99	86.986	ENSKMAG00000001202	exosc1	61	86.986	Kryptolebias_marmoratus
ENSSHAG00000018219	EXOSC1	99	89.726	ENSLBEG00000011448	exosc1	75	89.726	Labrus_bergylta
ENSSHAG00000018219	EXOSC1	100	60.526	ENSLOCG00000003776	exosc1	70	60.526	Lepisosteus_oculatus
ENSSHAG00000018219	EXOSC1	100	95.918	ENSLAFG00000015983	EXOSC1	75	95.918	Loxodonta_africana
ENSSHAG00000018219	EXOSC1	100	95.238	ENSMFAG00000001493	EXOSC1	75	95.238	Macaca_fascicularis
ENSSHAG00000018219	EXOSC1	100	95.238	ENSMMUG00000020028	EXOSC1	71	96.721	Macaca_mulatta
ENSSHAG00000018219	EXOSC1	100	95.238	ENSMNEG00000029816	EXOSC1	75	95.238	Macaca_nemestrina
ENSSHAG00000018219	EXOSC1	100	87.755	ENSMLEG00000027643	EXOSC1	75	87.755	Mandrillus_leucophaeus
ENSSHAG00000018219	EXOSC1	100	89.116	ENSMAMG00000012200	exosc1	75	89.116	Mastacembelus_armatus
ENSSHAG00000018219	EXOSC1	99	89.041	ENSMZEG00005007042	exosc1	75	89.041	Maylandia_zebra
ENSSHAG00000018219	EXOSC1	83	96.721	ENSMAUG00000020462	-	71	96.721	Mesocricetus_auratus
ENSSHAG00000018219	EXOSC1	100	95.918	ENSMICG00000007664	EXOSC1	71	97.541	Microcebus_murinus
ENSSHAG00000018219	EXOSC1	100	94.558	ENSMOCG00000006004	-	75	94.558	Microtus_ochrogaster
ENSSHAG00000018219	EXOSC1	100	89.116	ENSMOCG00000017124	-	74	89.116	Microtus_ochrogaster
ENSSHAG00000018219	EXOSC1	100	63.265	ENSMMOG00000021403	exosc1	70	63.265	Mola_mola
ENSSHAG00000018219	EXOSC1	100	99.320	ENSMODG00000004213	EXOSC1	75	99.320	Monodelphis_domestica
ENSSHAG00000018219	EXOSC1	100	88.435	ENSMALG00000007061	exosc1	73	88.435	Monopterus_albus
ENSSHAG00000018219	EXOSC1	100	93.878	MGP_CAROLIEiJ_G0022959	Exosc1	75	93.878	Mus_caroli
ENSSHAG00000018219	EXOSC1	100	93.878	ENSMUSG00000034321	Exosc1	75	93.878	Mus_musculus
ENSSHAG00000018219	EXOSC1	100	94.558	MGP_PahariEiJ_G0014449	Exosc1	75	94.558	Mus_pahari
ENSSHAG00000018219	EXOSC1	100	93.878	MGP_SPRETEiJ_G0023880	Exosc1	75	93.878	Mus_spretus
ENSSHAG00000018219	EXOSC1	100	95.918	ENSMPUG00000017044	EXOSC1	75	95.918	Mustela_putorius_furo
ENSSHAG00000018219	EXOSC1	100	96.599	ENSMLUG00000009228	EXOSC1	75	96.599	Myotis_lucifugus
ENSSHAG00000018219	EXOSC1	100	93.878	ENSNGAG00000022033	Exosc1	75	93.878	Nannospalax_galili
ENSSHAG00000018219	EXOSC1	100	63.265	ENSNBRG00000024007	exosc1	68	63.265	Neolamprologus_brichardi
ENSSHAG00000018219	EXOSC1	100	94.558	ENSNLEG00000013872	EXOSC1	75	94.558	Nomascus_leucogenys
ENSSHAG00000018219	EXOSC1	100	95.918	ENSOPRG00000005065	EXOSC1	75	95.918	Ochotona_princeps
ENSSHAG00000018219	EXOSC1	100	96.599	ENSODEG00000016709	EXOSC1	75	96.599	Octodon_degus
ENSSHAG00000018219	EXOSC1	99	89.041	ENSONIG00000017683	exosc1	74	89.041	Oreochromis_niloticus
ENSSHAG00000018219	EXOSC1	79	93.966	ENSOANG00000006563	EXOSC1	98	92.000	Ornithorhynchus_anatinus
ENSSHAG00000018219	EXOSC1	100	95.270	ENSOCUG00000011898	-	75	95.270	Oryctolagus_cuniculus
ENSSHAG00000018219	EXOSC1	100	89.796	ENSOCUG00000026461	-	75	89.796	Oryctolagus_cuniculus
ENSSHAG00000018219	EXOSC1	99	86.986	ENSORLG00000011595	exosc1	75	86.986	Oryzias_latipes
ENSSHAG00000018219	EXOSC1	99	86.986	ENSORLG00020005831	exosc1	75	86.986	Oryzias_latipes_hni
ENSSHAG00000018219	EXOSC1	99	86.986	ENSORLG00015004317	exosc1	75	86.986	Oryzias_latipes_hsok
ENSSHAG00000018219	EXOSC1	99	67.123	ENSOMEG00000013907	exosc1	72	67.123	Oryzias_melastigma
ENSSHAG00000018219	EXOSC1	100	95.238	ENSOGAG00000016259	EXOSC1	75	95.238	Otolemur_garnettii
ENSSHAG00000018219	EXOSC1	100	95.238	ENSOARG00000010136	EXOSC1	75	95.238	Ovis_aries
ENSSHAG00000018219	EXOSC1	100	87.248	ENSPPAG00000039842	EXOSC1	75	87.248	Pan_paniscus
ENSSHAG00000018219	EXOSC1	100	95.918	ENSPPRG00000023366	EXOSC1	75	95.918	Panthera_pardus
ENSSHAG00000018219	EXOSC1	100	95.918	ENSPTIG00000017701	EXOSC1	75	95.918	Panthera_tigris_altaica
ENSSHAG00000018219	EXOSC1	100	95.238	ENSPTRG00000002808	EXOSC1	75	95.238	Pan_troglodytes
ENSSHAG00000018219	EXOSC1	100	95.238	ENSPANG00000021324	EXOSC1	75	95.238	Papio_anubis
ENSSHAG00000018219	EXOSC1	99	90.411	ENSPKIG00000016037	exosc1	75	90.411	Paramormyrops_kingsleyae
ENSSHAG00000018219	EXOSC1	100	79.592	ENSPSIG00000013571	EXOSC1	98	79.675	Pelodiscus_sinensis
ENSSHAG00000018219	EXOSC1	83	89.344	ENSPMGG00000014002	exosc1	72	89.344	Periophthalmus_magnuspinnatus
ENSSHAG00000018219	EXOSC1	100	94.558	ENSPEMG00000010710	-	75	94.558	Peromyscus_maniculatus_bairdii
ENSSHAG00000018219	EXOSC1	100	73.469	ENSPMAG00000000195	exosc1	74	73.469	Petromyzon_marinus
ENSSHAG00000018219	EXOSC1	100	99.320	ENSPCIG00000002210	EXOSC1	74	99.320	Phascolarctos_cinereus
ENSSHAG00000018219	EXOSC1	100	82.993	ENSPFOG00000006755	exosc1	72	82.993	Poecilia_formosa
ENSSHAG00000018219	EXOSC1	100	82.993	ENSPLAG00000005880	exosc1	75	83.740	Poecilia_latipinna
ENSSHAG00000018219	EXOSC1	100	82.993	ENSPMEG00000015598	exosc1	72	82.993	Poecilia_mexicana
ENSSHAG00000018219	EXOSC1	84	82.927	ENSPREG00000000405	exosc1	68	82.927	Poecilia_reticulata
ENSSHAG00000018219	EXOSC1	100	94.558	ENSPPYG00000002531	EXOSC1	75	94.558	Pongo_abelii
ENSSHAG00000018219	EXOSC1	100	95.918	ENSPCAG00000009135	EXOSC1	75	95.918	Procavia_capensis
ENSSHAG00000018219	EXOSC1	100	87.755	ENSPCOG00000027539	EXOSC1	73	87.755	Propithecus_coquereli
ENSSHAG00000018219	EXOSC1	100	96.599	ENSPVAG00000003372	EXOSC1	75	96.599	Pteropus_vampyrus
ENSSHAG00000018219	EXOSC1	99	89.041	ENSPNYG00000021745	exosc1	75	89.041	Pundamilia_nyererei
ENSSHAG00000018219	EXOSC1	99	88.356	ENSPNAG00000001944	exosc1	75	88.356	Pygocentrus_nattereri
ENSSHAG00000018219	EXOSC1	100	94.558	ENSRNOG00000048708	Exosc1	75	94.558	Rattus_norvegicus
ENSSHAG00000018219	EXOSC1	100	95.238	ENSRBIG00000035618	EXOSC1	75	95.238	Rhinopithecus_bieti
ENSSHAG00000018219	EXOSC1	100	95.238	ENSRROG00000032589	EXOSC1	71	96.721	Rhinopithecus_roxellana
ENSSHAG00000018219	EXOSC1	100	96.599	ENSSBOG00000000359	EXOSC1	75	96.599	Saimiri_boliviensis_boliviensis
ENSSHAG00000018219	EXOSC1	100	84.354	ENSSFOG00015016289	-	75	84.354	Scleropages_formosus
ENSSHAG00000018219	EXOSC1	100	89.796	ENSSFOG00015009069	exosc1	75	89.796	Scleropages_formosus
ENSSHAG00000018219	EXOSC1	99	89.726	ENSSMAG00000003721	exosc1	75	89.726	Scophthalmus_maximus
ENSSHAG00000018219	EXOSC1	99	90.411	ENSSDUG00000002993	exosc1	75	90.411	Seriola_dumerili
ENSSHAG00000018219	EXOSC1	99	90.411	ENSSLDG00000025181	exosc1	75	90.411	Seriola_lalandi_dorsalis
ENSSHAG00000018219	EXOSC1	83	96.721	ENSSARG00000000162	EXOSC1	62	96.721	Sorex_araneus
ENSSHAG00000018219	EXOSC1	99	85.517	ENSSPUG00000012263	EXOSC1	74	85.517	Sphenodon_punctatus
ENSSHAG00000018219	EXOSC1	100	78.231	ENSSPAG00000016792	exosc1	61	78.231	Stegastes_partitus
ENSSHAG00000018219	EXOSC1	100	94.558	ENSSSCG00000010518	EXOSC1	68	94.558	Sus_scrofa
ENSSHAG00000018219	EXOSC1	100	87.755	ENSTGUG00000009692	EXOSC1	75	87.755	Taeniopygia_guttata
ENSSHAG00000018219	EXOSC1	100	78.231	ENSTRUG00000007706	exosc1	76	78.231	Takifugu_rubripes
ENSSHAG00000018219	EXOSC1	100	79.195	ENSTNIG00000014079	exosc1	75	79.195	Tetraodon_nigroviridis
ENSSHAG00000018219	EXOSC1	93	94.118	ENSTBEG00000006011	EXOSC1	69	94.118	Tupaia_belangeri
ENSSHAG00000018219	EXOSC1	100	95.918	ENSTTRG00000009887	EXOSC1	79	95.918	Tursiops_truncatus
ENSSHAG00000018219	EXOSC1	100	72.789	ENSUAMG00000010266	EXOSC1	53	96.341	Ursus_americanus
ENSSHAG00000018219	EXOSC1	100	74.150	ENSUMAG00000022002	EXOSC1	53	96.341	Ursus_maritimus
ENSSHAG00000018219	EXOSC1	100	82.993	ENSXETG00000003434	exosc1	75	82.993	Xenopus_tropicalis
ENSSHAG00000018219	EXOSC1	82	85.124	ENSXCOG00000014499	exosc1	92	85.124	Xiphophorus_couchianus
ENSSHAG00000018219	EXOSC1	84	83.740	ENSXMAG00000023382	exosc1	68	83.740	Xiphophorus_maculatus