EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000018552 (Gene tree)
Gene ID: 100923588
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 47202 bases
Position: chrGL849620.1:3729232-3776433
Accession: 100923588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000021917	Rif1_N	PF12231.8	2.3e-75	1	1
ENSSHAP00000021918	Rif1_N	PF12231.8	8.3e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000022093	RIF1-202	6696	-	ENSSHAP00000021918	2232 (aa)	-	G3X2L3
ENSSHAT00000022092	RIF1-201	7201	-	ENSSHAP00000021917	2399 (aa)	XP_023354975	G3X2L2

Gene Model

Click here to download ENSSHAG00000018552's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000018552's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000018552	RIF1	100	58.390	ENSG00000080345	RIF1	97	77.129	Homo_sapiens
ENSSHAG00000018552	RIF1	66	50.279	ENSAPOG00000011073	rif1	64	50.279	Acanthochromis_polyacanthus
ENSSHAG00000018552	RIF1	100	59.448	ENSAMEG00000008461	RIF1	100	59.960	Ailuropoda_melanoleuca
ENSSHAG00000018552	RIF1	65	51.618	ENSACIG00000017765	rif1	69	51.539	Amphilophus_citrinellus
ENSSHAG00000018552	RIF1	65	50.159	ENSAOCG00000017231	rif1	65	50.159	Amphiprion_ocellaris
ENSSHAG00000018552	RIF1	65	58.184	ENSAPEG00000013228	rif1	63	58.184	Amphiprion_percula
ENSSHAG00000018552	RIF1	85	46.023	ENSATEG00000022887	rif1	82	45.739	Anabas_testudineus
ENSSHAG00000018552	RIF1	92	69.322	ENSAPLG00000007092	RIF1	96	68.732	Anas_platyrhynchos
ENSSHAG00000018552	RIF1	93	59.701	ENSACAG00000003714	RIF1	97	59.701	Anolis_carolinensis
ENSSHAG00000018552	RIF1	100	58.778	ENSANAG00000024840	RIF1	99	60.056	Aotus_nancymaae
ENSSHAG00000018552	RIF1	63	51.047	ENSAMXG00000010910	rif1	63	51.237	Astyanax_mexicanus
ENSSHAG00000018552	RIF1	100	58.829	ENSBTAG00000021020	RIF1	99	59.310	Bos_taurus
ENSSHAG00000018552	RIF1	100	58.711	ENSCJAG00000003138	RIF1	99	59.737	Callithrix_jacchus
ENSSHAG00000018552	RIF1	100	58.666	ENSCAFG00020016401	RIF1	99	59.095	Canis_lupus_dingo
ENSSHAG00000018552	RIF1	100	59.000	ENSCHIG00000020327	RIF1	99	59.912	Capra_hircus
ENSSHAG00000018552	RIF1	99	58.505	ENSTSYG00000008861	RIF1	99	57.698	Carlito_syrichta
ENSSHAG00000018552	RIF1	85	59.310	ENSCAPG00000008957	RIF1	95	62.791	Cavia_aperea
ENSSHAG00000018552	RIF1	99	58.118	ENSCCAG00000024760	RIF1	99	58.198	Cebus_capucinus
ENSSHAG00000018552	RIF1	100	59.218	ENSCATG00000033353	RIF1	99	60.096	Cercocebus_atys
ENSSHAG00000018552	RIF1	100	59.021	ENSCSAG00000016089	RIF1	99	60.136	Chlorocebus_sabaeus
ENSSHAG00000018552	RIF1	95	74.118	ENSCPBG00000025885	RIF1	99	74.118	Chrysemys_picta_bellii
ENSSHAG00000018552	RIF1	99	58.807	ENSCANG00000028962	RIF1	100	59.197	Colobus_angolensis_palliatus
ENSSHAG00000018552	RIF1	99	56.195	ENSCGRG00001024589	Rif1	100	56.396	Cricetulus_griseus_chok1gshd
ENSSHAG00000018552	RIF1	99	56.828	ENSCGRG00000010713	Rif1	100	57.294	Cricetulus_griseus_crigri
ENSSHAG00000018552	RIF1	51	49.236	ENSCSEG00000003945	rif1	54	49.324	Cynoglossus_semilaevis
ENSSHAG00000018552	RIF1	68	48.983	ENSCVAG00000022479	rif1	70	48.905	Cyprinodon_variegatus
ENSSHAG00000018552	RIF1	99	59.335	ENSDNOG00000011194	RIF1	97	59.295	Dasypus_novemcinctus
ENSSHAG00000018552	RIF1	83	60.952	ENSETEG00000012421	RIF1	80	60.952	Echinops_telfairi
ENSSHAG00000018552	RIF1	96	87.500	ENSEASG00005023434	RIF1	99	84.539	Equus_asinus_asinus
ENSSHAG00000018552	RIF1	65	51.308	ENSELUG00000006826	rif1	56	51.749	Esox_lucius
ENSSHAG00000018552	RIF1	100	58.291	ENSFCAG00000029742	RIF1	99	58.882	Felis_catus
ENSSHAG00000018552	RIF1	84	64.329	ENSFALG00000013874	RIF1	93	58.586	Ficedula_albicollis
ENSSHAG00000018552	RIF1	100	56.848	ENSFDAG00000006538	RIF1	99	57.656	Fukomys_damarensis
ENSSHAG00000018552	RIF1	64	50.287	ENSFHEG00000013721	rif1	65	50.244	Fundulus_heteroclitus
ENSSHAG00000018552	RIF1	56	49.315	ENSGMOG00000003517	rif1	83	49.315	Gadus_morhua
ENSSHAG00000018552	RIF1	91	60.158	ENSGALG00000012484	RIF1	99	56.542	Gallus_gallus
ENSSHAG00000018552	RIF1	68	50.366	ENSGAFG00000017196	rif1	73	52.900	Gambusia_affinis
ENSSHAG00000018552	RIF1	60	57.143	ENSGACG00000008579	rif1	66	52.510	Gasterosteus_aculeatus
ENSSHAG00000018552	RIF1	91	73.874	ENSGAGG00000012595	RIF1	96	73.874	Gopherus_agassizii
ENSSHAG00000018552	RIF1	89	81.937	ENSGGOG00000040178	RIF1	96	79.714	Gorilla_gorilla
ENSSHAG00000018552	RIF1	72	50.951	ENSHBUG00000007125	rif1	76	50.951	Haplochromis_burtoni
ENSSHAG00000018552	RIF1	94	57.331	ENSHGLG00100009807	RIF1	99	57.416	Heterocephalus_glaber_male
ENSSHAG00000018552	RIF1	65	49.279	ENSHCOG00000015943	rif1	59	49.519	Hippocampus_comes
ENSSHAG00000018552	RIF1	64	52.373	ENSIPUG00000021703	rif1	63	52.438	Ictalurus_punctatus
ENSSHAG00000018552	RIF1	99	65.258	ENSSTOG00000020712	RIF1	99	65.258	Ictidomys_tridecemlineatus
ENSSHAG00000018552	RIF1	77	58.047	ENSJJAG00000023000	Rif1	99	55.967	Jaculus_jaculus
ENSSHAG00000018552	RIF1	65	49.132	ENSKMAG00000002852	rif1	67	49.132	Kryptolebias_marmoratus
ENSSHAG00000018552	RIF1	65	51.079	ENSLBEG00000023196	rif1	58	51.079	Labrus_bergylta
ENSSHAG00000018552	RIF1	66	64.265	ENSLACG00000005425	RIF1	92	64.841	Latimeria_chalumnae
ENSSHAG00000018552	RIF1	65	53.039	ENSLOCG00000002657	rif1	86	51.592	Lepisosteus_oculatus
ENSSHAG00000018552	RIF1	100	58.656	ENSLAFG00000009796	RIF1	100	59.453	Loxodonta_africana
ENSSHAG00000018552	RIF1	100	59.304	ENSMFAG00000032233	RIF1	99	60.136	Macaca_fascicularis
ENSSHAG00000018552	RIF1	100	59.218	ENSMMUG00000008611	RIF1	99	60.096	Macaca_mulatta
ENSSHAG00000018552	RIF1	100	59.218	ENSMNEG00000031616	RIF1	99	60.056	Macaca_nemestrina
ENSSHAG00000018552	RIF1	100	59.234	ENSMLEG00000042945	RIF1	99	60.113	Mandrillus_leucophaeus
ENSSHAG00000018552	RIF1	65	49.485	ENSMAMG00000001745	rif1	65	49.485	Mastacembelus_armatus
ENSSHAG00000018552	RIF1	66	51.150	ENSMZEG00005020920	rif1	70	51.150	Maylandia_zebra
ENSSHAG00000018552	RIF1	91	56.608	ENSMGAG00000012732	RIF1	99	52.596	Meleagris_gallopavo
ENSSHAG00000018552	RIF1	86	80.000	ENSMAUG00000013158	Rif1	87	80.000	Mesocricetus_auratus
ENSSHAG00000018552	RIF1	100	59.468	ENSMICG00000046127	RIF1	99	60.465	Microcebus_murinus
ENSSHAG00000018552	RIF1	100	54.929	ENSMOCG00000009381	Rif1	100	56.024	Microtus_ochrogaster
ENSSHAG00000018552	RIF1	64	49.045	ENSMMOG00000006519	rif1	64	48.653	Mola_mola
ENSSHAG00000018552	RIF1	99	82.609	ENSMODG00000003703	RIF1	99	82.609	Monodelphis_domestica
ENSSHAG00000018552	RIF1	60	51.671	ENSMALG00000016759	rif1	68	51.852	Monopterus_albus
ENSSHAG00000018552	RIF1	100	55.478	MGP_CAROLIEiJ_G0023555	Rif1	100	56.222	Mus_caroli
ENSSHAG00000018552	RIF1	74	59.967	ENSMUSG00000036202	Rif1	72	60.312	Mus_musculus
ENSSHAG00000018552	RIF1	100	53.930	MGP_PahariEiJ_G0025006	Rif1	100	55.028	Mus_pahari
ENSSHAG00000018552	RIF1	100	55.383	MGP_SPRETEiJ_G0024476	Rif1	100	56.411	Mus_spretus
ENSSHAG00000018552	RIF1	100	58.889	ENSMPUG00000000371	RIF1	99	59.490	Mustela_putorius_furo
ENSSHAG00000018552	RIF1	96	56.477	ENSMLUG00000003376	RIF1	100	56.328	Myotis_lucifugus
ENSSHAG00000018552	RIF1	100	58.713	ENSNGAG00000009268	Rif1	99	59.469	Nannospalax_galili
ENSSHAG00000018552	RIF1	64	50.286	ENSNBRG00000014257	rif1	69	49.604	Neolamprologus_brichardi
ENSSHAG00000018552	RIF1	100	57.173	ENSNLEG00000010955	RIF1	99	58.006	Nomascus_leucogenys
ENSSHAG00000018552	RIF1	84	86.885	ENSMEUG00000007601	-	88	86.885	Notamacropus_eugenii
ENSSHAG00000018552	RIF1	74	50.077	ENSONIG00000013657	rif1	76	50.115	Oreochromis_niloticus
ENSSHAG00000018552	RIF1	85	75.187	ENSOANG00000006078	-	85	75.518	Ornithorhynchus_anatinus
ENSSHAG00000018552	RIF1	100	57.762	ENSOCUG00000017435	RIF1	99	58.654	Oryctolagus_cuniculus
ENSSHAG00000018552	RIF1	64	48.988	ENSORLG00020001302	rif1	67	49.029	Oryzias_latipes_hni
ENSSHAG00000018552	RIF1	64	48.905	ENSORLG00015000009	rif1	67	48.947	Oryzias_latipes_hsok
ENSSHAG00000018552	RIF1	63	49.312	ENSOMEG00000021513	rif1	69	48.445	Oryzias_melastigma
ENSSHAG00000018552	RIF1	100	58.293	ENSOGAG00000006141	RIF1	100	58.494	Otolemur_garnettii
ENSSHAG00000018552	RIF1	100	59.358	ENSOARG00000008930	RIF1	99	59.960	Ovis_aries
ENSSHAG00000018552	RIF1	100	58.237	ENSPPAG00000023754	RIF1	99	59.216	Pan_paniscus
ENSSHAG00000018552	RIF1	100	58.005	ENSPPRG00000003618	RIF1	99	58.802	Panthera_pardus
ENSSHAG00000018552	RIF1	100	58.337	ENSPTRG00000012534	RIF1	99	59.306	Pan_troglodytes
ENSSHAG00000018552	RIF1	100	59.218	ENSPANG00000008525	RIF1	99	60.096	Papio_anubis
ENSSHAG00000018552	RIF1	84	44.903	ENSPKIG00000004267	rif1	71	50.835	Paramormyrops_kingsleyae
ENSSHAG00000018552	RIF1	64	45.938	ENSPMGG00000016141	rif1	75	45.912	Periophthalmus_magnuspinnatus
ENSSHAG00000018552	RIF1	72	61.556	ENSPEMG00000000446	Rif1	88	67.067	Peromyscus_maniculatus_bairdii
ENSSHAG00000018552	RIF1	100	85.963	ENSPCIG00000009185	RIF1	100	85.963	Phascolarctos_cinereus
ENSSHAG00000018552	RIF1	65	50.752	ENSPFOG00000017804	rif1	67	50.752	Poecilia_formosa
ENSSHAG00000018552	RIF1	63	50.498	ENSPFOG00000000554	-	65	50.589	Poecilia_formosa
ENSSHAG00000018552	RIF1	65	50.675	ENSPLAG00000017945	rif1	70	50.595	Poecilia_latipinna
ENSSHAG00000018552	RIF1	60	56.881	ENSPREG00000018052	rif1	72	53.646	Poecilia_reticulata
ENSSHAG00000018552	RIF1	100	58.668	ENSPPYG00000012846	RIF1	99	59.697	Pongo_abelii
ENSSHAG00000018552	RIF1	81	72.816	ENSPCAG00000009032	RIF1	81	72.816	Procavia_capensis
ENSSHAG00000018552	RIF1	99	60.623	ENSPCOG00000027888	RIF1	99	60.690	Propithecus_coquereli
ENSSHAG00000018552	RIF1	92	81.024	ENSPVAG00000014276	RIF1	93	78.586	Pteropus_vampyrus
ENSSHAG00000018552	RIF1	66	49.643	ENSPNYG00000012940	rif1	74	46.974	Pundamilia_nyererei
ENSSHAG00000018552	RIF1	51	52.184	ENSPNAG00000016685	rif1	51	52.366	Pygocentrus_nattereri
ENSSHAG00000018552	RIF1	99	54.935	ENSRNOG00000054901	Rif1	100	55.079	Rattus_norvegicus
ENSSHAG00000018552	RIF1	100	58.408	ENSRBIG00000003704	RIF1	99	59.313	Rhinopithecus_bieti
ENSSHAG00000018552	RIF1	100	58.922	ENSRROG00000028206	RIF1	99	59.752	Rhinopithecus_roxellana
ENSSHAG00000018552	RIF1	97	76.344	ENSSBOG00000029530	RIF1	99	76.344	Saimiri_boliviensis_boliviensis
ENSSHAG00000018552	RIF1	64	51.537	ENSSFOG00015021539	rif1	73	51.537	Scleropages_formosus
ENSSHAG00000018552	RIF1	65	50.000	ENSSMAG00000011704	rif1	61	49.179	Scophthalmus_maximus
ENSSHAG00000018552	RIF1	64	50.572	ENSSDUG00000015632	rif1	68	50.281	Seriola_dumerili
ENSSHAG00000018552	RIF1	51	50.846	ENSSLDG00000019531	rif1	50	50.719	Seriola_lalandi_dorsalis
ENSSHAG00000018552	RIF1	100	53.621	ENSSPUG00000003062	RIF1	99	54.640	Sphenodon_punctatus
ENSSHAG00000018552	RIF1	50	58.896	ENSSPAG00000018359	rif1	75	58.896	Stegastes_partitus
ENSSHAG00000018552	RIF1	65	50.158	ENSTRUG00000015808	rif1	69	50.158	Takifugu_rubripes
ENSSHAG00000018552	RIF1	65	50.904	ENSTNIG00000011538	rif1	68	50.000	Tetraodon_nigroviridis
ENSSHAG00000018552	RIF1	76	76.433	ENSTBEG00000016082	RIF1	74	76.433	Tupaia_belangeri
ENSSHAG00000018552	RIF1	97	58.393	ENSUAMG00000026385	RIF1	99	58.437	Ursus_americanus
ENSSHAG00000018552	RIF1	100	59.614	ENSUMAG00000000337	RIF1	99	59.976	Ursus_maritimus
ENSSHAG00000018552	RIF1	97	61.396	ENSVPAG00000002162	RIF1	99	57.983	Vicugna_pacos
ENSSHAG00000018552	RIF1	100	58.885	ENSVVUG00000011293	RIF1	99	59.338	Vulpes_vulpes
ENSSHAG00000018552	RIF1	87	65.060	ENSXETG00000004530	rif1	86	64.759	Xenopus_tropicalis