EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000001670 (Gene tree)
Gene ID: -
Gene Symbol: safb
Alias: wu:fb40a03|wu:fd42g06|zgc:55387
Full Name: scaffold attachment factor B2-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 10073 bases
Position: chrPEQF01098746.1:172737-182809
Accession: 111654287
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000002026	RRM_5	PF13893.6	4e-06	1	1
ENSSLDP00000002026	RRM_1	PF00076.22	6.5e-14	1	1
ENSSLDP00000002026	SAP	PF02037.27	3.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000002119	-	4640	XM_023405240	ENSSLDP00000002026	828 (aa)	XP_023261008	UPI000C6F61AA

Gene Model

Click here to download ENSSLDG00000001670's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000001670's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000001670	safb	65	41.838	ENSG00000160633	SAFB	78	66.393	Homo_sapiens
ENSSLDG00000001670	safb	100	87.846	ENSAPOG00000022508	safb	100	88.448	Acanthochromis_polyacanthus
ENSSLDG00000001670	safb	66	42.240	ENSAMEG00000012254	SAFB	98	42.796	Ailuropoda_melanoleuca
ENSSLDG00000001670	safb	100	76.014	ENSACIG00000006247	safb	100	76.905	Amphilophus_citrinellus
ENSSLDG00000001670	safb	95	87.657	ENSAOCG00000006308	safb	100	87.657	Amphiprion_ocellaris
ENSSLDG00000001670	safb	100	87.726	ENSAPEG00000023342	safb	100	88.087	Amphiprion_percula
ENSSLDG00000001670	safb	100	87.112	ENSATEG00000004998	safb	100	86.993	Anabas_testudineus
ENSSLDG00000001670	safb	59	43.486	ENSAPLG00000006355	-	99	46.081	Anas_platyrhynchos
ENSSLDG00000001670	safb	60	38.609	ENSAPLG00000005780	-	98	42.584	Anas_platyrhynchos
ENSSLDG00000001670	safb	65	43.296	ENSANAG00000028821	SAFB	95	43.961	Aotus_nancymaae
ENSSLDG00000001670	safb	100	80.645	ENSACLG00000001926	safb	100	80.884	Astatotilapia_calliptera
ENSSLDG00000001670	safb	98	62.920	ENSAMXG00000018154	safb	100	60.811	Astyanax_mexicanus
ENSSLDG00000001670	safb	95	43.300	ENSBTAG00000007875	SAFB	95	43.189	Bos_taurus
ENSSLDG00000001670	safb	66	41.946	ENSCAFG00000018803	SAFB	83	43.042	Canis_familiaris
ENSSLDG00000001670	safb	66	41.946	ENSCAFG00020018943	SAFB	97	42.796	Canis_lupus_dingo
ENSSLDG00000001670	safb	95	43.561	ENSCHIG00000007262	SAFB	95	43.237	Capra_hircus
ENSSLDG00000001670	safb	55	44.336	ENSTSYG00000001851	-	90	43.636	Carlito_syrichta
ENSSLDG00000001670	safb	65	43.274	ENSCCAG00000020193	SAFB	95	43.948	Cebus_capucinus
ENSSLDG00000001670	safb	65	41.680	ENSCATG00000029994	SAFB	95	43.454	Cercocebus_atys
ENSSLDG00000001670	safb	65	41.680	ENSCSAG00000009949	SAFB	95	43.348	Chlorocebus_sabaeus
ENSSLDG00000001670	safb	59	33.447	ENSCHOG00000003208	SAFB	87	39.055	Choloepus_hoffmanni
ENSSLDG00000001670	safb	92	42.775	ENSCPBG00000010928	-	98	44.046	Chrysemys_picta_bellii
ENSSLDG00000001670	safb	91	45.692	ENSCPBG00000010936	-	97	44.910	Chrysemys_picta_bellii
ENSSLDG00000001670	safb	80	45.349	ENSCANG00000004774	-	93	43.878	Colobus_angolensis_palliatus
ENSSLDG00000001670	safb	95	40.832	ENSCANG00000019754	-	95	41.247	Colobus_angolensis_palliatus
ENSSLDG00000001670	safb	64	70.919	ENSCSEG00000019870	safb	100	70.767	Cynoglossus_semilaevis
ENSSLDG00000001670	safb	100	65.301	ENSCVAG00000002226	safb	100	65.663	Cyprinodon_variegatus
ENSSLDG00000001670	safb	96	63.787	ENSDARG00000020467	safb	98	63.448	Danio_rerio
ENSSLDG00000001670	safb	65	40.952	ENSDNOG00000015746	SAFB	95	41.286	Dasypus_novemcinctus
ENSSLDG00000001670	safb	64	42.219	ENSEASG00005023019	SAFB	97	42.888	Equus_asinus_asinus
ENSSLDG00000001670	safb	64	41.941	ENSECAG00000018659	SAFB	87	43.057	Equus_caballus
ENSSLDG00000001670	safb	99	65.092	ENSELUG00000022327	safb	99	64.760	Esox_lucius
ENSSLDG00000001670	safb	66	42.080	ENSFCAG00000011835	SAFB	97	43.056	Felis_catus
ENSSLDG00000001670	safb	64	43.115	ENSFALG00000013882	-	87	44.816	Ficedula_albicollis
ENSSLDG00000001670	safb	56	40.497	ENSFALG00000013881	-	98	43.792	Ficedula_albicollis
ENSSLDG00000001670	safb	100	67.148	ENSFHEG00000004219	safb	100	68.554	Fundulus_heteroclitus
ENSSLDG00000001670	safb	100	69.240	ENSGMOG00000014280	safb	100	69.834	Gadus_morhua
ENSSLDG00000001670	safb	64	42.222	ENSGALG00000001948	-	96	44.911	Gallus_gallus
ENSSLDG00000001670	safb	66	42.301	ENSGALG00000013365	-	97	43.944	Gallus_gallus
ENSSLDG00000001670	safb	100	65.509	ENSGAFG00000016162	safb	100	65.278	Gambusia_affinis
ENSSLDG00000001670	safb	100	79.384	ENSGACG00000011385	safb	100	79.265	Gasterosteus_aculeatus
ENSSLDG00000001670	safb	67	51.419	ENSGAGG00000017702	-	89	53.177	Gopherus_agassizii
ENSSLDG00000001670	safb	95	47.978	ENSGAGG00000008424	-	98	47.149	Gopherus_agassizii
ENSSLDG00000001670	safb	65	42.080	ENSGGOG00000015109	SAFB	95	43.587	Gorilla_gorilla
ENSSLDG00000001670	safb	100	70.659	ENSHBUG00000009218	safb	100	73.571	Haplochromis_burtoni
ENSSLDG00000001670	safb	94	67.263	ENSHCOG00000001705	safb	99	66.582	Hippocampus_comes
ENSSLDG00000001670	safb	99	64.413	ENSIPUG00000024869	safb2	100	64.070	Ictalurus_punctatus
ENSSLDG00000001670	safb	100	79.688	ENSKMAG00000022308	safb	100	79.447	Kryptolebias_marmoratus
ENSSLDG00000001670	safb	100	83.432	ENSLBEG00000006015	safb	100	83.195	Labrus_bergylta
ENSSLDG00000001670	safb	65	43.981	ENSLACG00000018090	SAFB	98	48.013	Latimeria_chalumnae
ENSSLDG00000001670	safb	98	64.959	ENSLOCG00000003613	safb	99	64.658	Lepisosteus_oculatus
ENSSLDG00000001670	safb	95	42.424	ENSLAFG00000003840	SAFB	96	43.871	Loxodonta_africana
ENSSLDG00000001670	safb	65	41.468	ENSMFAG00000003885	SAFB	95	43.454	Macaca_fascicularis
ENSSLDG00000001670	safb	65	42.557	ENSMMUG00000017970	SAFB	95	43.867	Macaca_mulatta
ENSSLDG00000001670	safb	65	40.554	ENSMNEG00000035637	SAFB	95	42.716	Macaca_nemestrina
ENSSLDG00000001670	safb	65	39.222	ENSMLEG00000038637	SAFB	95	42.169	Mandrillus_leucophaeus
ENSSLDG00000001670	safb	100	88.517	ENSMAMG00000003357	safb	91	86.962	Mastacembelus_armatus
ENSSLDG00000001670	safb	100	83.848	ENSMZEG00005009120	safb	100	84.323	Maylandia_zebra
ENSSLDG00000001670	safb	64	43.902	ENSMGAG00000001051	-	96	46.931	Meleagris_gallopavo
ENSSLDG00000001670	safb	97	40.992	ENSMGAG00000001101	-	98	42.826	Meleagris_gallopavo
ENSSLDG00000001670	safb	65	42.492	ENSMICG00000008739	-	97	43.469	Microcebus_murinus
ENSSLDG00000001670	safb	86	37.817	ENSMICG00000046795	-	95	38.755	Microcebus_murinus
ENSSLDG00000001670	safb	94	43.077	ENSMODG00000001236	SAFB	95	42.721	Monodelphis_domestica
ENSSLDG00000001670	safb	100	85.512	ENSMALG00000020330	safb	100	83.863	Monopterus_albus
ENSSLDG00000001670	safb	66	41.506	ENSMPUG00000006123	SAFB	90	42.965	Mustela_putorius_furo
ENSSLDG00000001670	safb	98	42.167	ENSMLUG00000001081	SAFB	95	41.998	Myotis_lucifugus
ENSSLDG00000001670	safb	65	41.760	ENSNLEG00000013551	SAFB	97	43.667	Nomascus_leucogenys
ENSSLDG00000001670	safb	59	37.610	ENSOPRG00000011561	-	98	40.524	Ochotona_princeps
ENSSLDG00000001670	safb	100	83.155	ENSONIG00000002318	safb	100	83.630	Oreochromis_niloticus
ENSSLDG00000001670	safb	86	40.366	ENSOCUG00000014628	SAFB	61	42.065	Oryctolagus_cuniculus
ENSSLDG00000001670	safb	98	76.161	ENSORLG00000016989	safb	100	75.388	Oryzias_latipes
ENSSLDG00000001670	safb	66	70.886	ENSORLG00020000404	safb	100	68.421	Oryzias_latipes_hni
ENSSLDG00000001670	safb	98	76.284	ENSORLG00015010733	safb	100	75.689	Oryzias_latipes_hsok
ENSSLDG00000001670	safb	100	75.962	ENSOMEG00000009066	safb	100	74.639	Oryzias_melastigma
ENSSLDG00000001670	safb	64	43.421	ENSOGAG00000027769	SAFB	97	43.441	Otolemur_garnettii
ENSSLDG00000001670	safb	81	38.645	ENSOARG00000007856	-	100	37.908	Ovis_aries
ENSSLDG00000001670	safb	95	40.247	ENSOARG00000007662	-	95	39.556	Ovis_aries
ENSSLDG00000001670	safb	65	41.760	ENSPPAG00000035129	SAFB	95	43.360	Pan_paniscus
ENSSLDG00000001670	safb	66	42.080	ENSPPRG00000017197	SAFB	97	43.056	Panthera_pardus
ENSSLDG00000001670	safb	65	41.456	ENSPTRG00000010335	SAFB	95	43.360	Pan_troglodytes
ENSSLDG00000001670	safb	65	41.139	ENSPANG00000007770	SAFB	95	43.595	Papio_anubis
ENSSLDG00000001670	safb	99	64.472	ENSPKIG00000009902	safb	99	64.846	Paramormyrops_kingsleyae
ENSSLDG00000001670	safb	99	45.793	ENSPSIG00000009367	-	96	45.981	Pelodiscus_sinensis
ENSSLDG00000001670	safb	99	46.772	ENSPSIG00000011679	-	98	46.993	Pelodiscus_sinensis
ENSSLDG00000001670	safb	58	50.275	ENSPCIG00000009504	-	98	52.071	Phascolarctos_cinereus
ENSSLDG00000001670	safb	100	67.703	ENSPFOG00000007745	safb	100	68.182	Poecilia_formosa
ENSSLDG00000001670	safb	100	64.638	ENSPLAG00000001614	safb	100	65.367	Poecilia_latipinna
ENSSLDG00000001670	safb	100	67.464	ENSPMEG00000021023	safb	100	67.943	Poecilia_mexicana
ENSSLDG00000001670	safb	100	65.885	ENSPREG00000012496	safb	100	66.824	Poecilia_reticulata
ENSSLDG00000001670	safb	65	41.838	ENSPPYG00000009428	SAFB	95	43.333	Pongo_abelii
ENSSLDG00000001670	safb	64	37.908	ENSPCAG00000006475	SAFB	95	40.345	Procavia_capensis
ENSSLDG00000001670	safb	95	40.914	ENSPCOG00000014090	SAFB	97	40.451	Propithecus_coquereli
ENSSLDG00000001670	safb	71	52.727	ENSPVAG00000004913	SAFB	71	52.727	Pteropus_vampyrus
ENSSLDG00000001670	safb	99	64.494	ENSPNAG00000021838	safb	99	65.222	Pygocentrus_nattereri
ENSSLDG00000001670	safb	65	42.808	ENSRBIG00000042509	SAFB	95	44.175	Rhinopithecus_bieti
ENSSLDG00000001670	safb	65	42.147	ENSRROG00000029278	SAFB	95	43.587	Rhinopithecus_roxellana
ENSSLDG00000001670	safb	65	43.178	ENSSBOG00000026291	SAFB	95	43.831	Saimiri_boliviensis_boliviensis
ENSSLDG00000001670	safb	99	64.097	ENSSFOG00015008156	safb	99	64.147	Scleropages_formosus
ENSSLDG00000001670	safb	100	88.862	ENSSMAG00000009316	safb	100	88.862	Scophthalmus_maximus
ENSSLDG00000001670	safb	100	91.546	ENSSDUG00000009652	safb	100	91.546	Seriola_dumerili
ENSSLDG00000001670	safb	59	40.105	ENSSARG00000010475	SAFB	98	40.611	Sorex_araneus
ENSSLDG00000001670	safb	56	40.494	ENSSPUG00000009747	-	99	39.242	Sphenodon_punctatus
ENSSLDG00000001670	safb	51	41.667	ENSSPUG00000009820	-	85	48.498	Sphenodon_punctatus
ENSSLDG00000001670	safb	99	78.303	ENSSPAG00000015682	safb	99	77.212	Stegastes_partitus
ENSSLDG00000001670	safb	64	41.667	ENSSSCG00000013522	SAFB	96	44.403	Sus_scrofa
ENSSLDG00000001670	safb	63	44.073	ENSTGUG00000000489	-	96	48.088	Taeniopygia_guttata
ENSSLDG00000001670	safb	64	42.975	ENSTGUG00000000502	-	97	45.546	Taeniopygia_guttata
ENSSLDG00000001670	safb	100	78.640	ENSTRUG00000003567	safb	100	76.850	Takifugu_rubripes
ENSSLDG00000001670	safb	91	64.425	ENSTNIG00000015470	safb	100	64.670	Tetraodon_nigroviridis
ENSSLDG00000001670	safb	66	75.000	ENSTTRG00000013588	SAFB	89	75.000	Tursiops_truncatus
ENSSLDG00000001670	safb	73	42.479	ENSUMAG00000009734	SAFB	85	42.596	Ursus_maritimus
ENSSLDG00000001670	safb	66	42.584	ENSVVUG00000013720	SAFB	83	43.380	Vulpes_vulpes
ENSSLDG00000001670	safb	64	44.966	ENSXETG00000008755	safb	65	65.591	Xenopus_tropicalis
ENSSLDG00000001670	safb	100	67.943	ENSXMAG00000003458	safb	100	68.660	Xiphophorus_maculatus