EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000001950 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 167406 bases
Position: chrPEQF01097914.1:10731-178136
Accession: 111651115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000002510	TUDOR	PF00567.24	2.4e-25	1	1
ENSSLDP00000002510	SNase	PF00565.17	2.1e-63	1	4
ENSSLDP00000002510	SNase	PF00565.17	2.1e-63	2	4
ENSSLDP00000002510	SNase	PF00565.17	2.1e-63	3	4
ENSSLDP00000002510	SNase	PF00565.17	2.1e-63	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000002612	-	2595	XM_023401067	ENSSLDP00000002510	864 (aa)	XP_023256835	-

Gene Model

Click here to download ENSSLDG00000001950's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000001950's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000001950	snd1	98	76.974	ENSG00000197157	SND1	100	76.206	Homo_sapiens
ENSSLDG00000001950	snd1	100	89.901	ENSAPOG00000017599	snd1	100	89.901	Acanthochromis_polyacanthus
ENSSLDG00000001950	snd1	100	76.258	ENSAMEG00000004664	SND1	94	76.258	Ailuropoda_melanoleuca
ENSSLDG00000001950	snd1	100	85.730	ENSACIG00000003551	snd1	100	85.730	Amphilophus_citrinellus
ENSSLDG00000001950	snd1	100	90.231	ENSAOCG00000014166	snd1	100	90.231	Amphiprion_ocellaris
ENSSLDG00000001950	snd1	100	90.011	ENSAPEG00000007067	snd1	100	90.011	Amphiprion_percula
ENSSLDG00000001950	snd1	98	88.479	ENSATEG00000018475	snd1	89	88.479	Anabas_testudineus
ENSSLDG00000001950	snd1	98	77.086	ENSANAG00000034463	SND1	100	76.316	Aotus_nancymaae
ENSSLDG00000001950	snd1	100	87.706	ENSACLG00000022897	snd1	100	87.706	Astatotilapia_calliptera
ENSSLDG00000001950	snd1	99	82.967	ENSAMXG00000016318	snd1	99	82.967	Astyanax_mexicanus
ENSSLDG00000001950	snd1	98	77.308	ENSBTAG00000010692	SND1	100	76.535	Bos_taurus
ENSSLDG00000001950	snd1	99	42.642	WBGene00006626	tsn-1	99	42.965	Caenorhabditis_elegans
ENSSLDG00000001950	snd1	98	77.086	ENSCJAG00000017668	SND1	100	76.316	Callithrix_jacchus
ENSSLDG00000001950	snd1	100	76.535	ENSCAFG00000001700	SND1	100	76.535	Canis_familiaris
ENSSLDG00000001950	snd1	100	76.535	ENSCAFG00020021639	SND1	100	76.535	Canis_lupus_dingo
ENSSLDG00000001950	snd1	98	77.197	ENSCHIG00000023390	SND1	100	76.425	Capra_hircus
ENSSLDG00000001950	snd1	68	75.965	ENSTSYG00000004979	SND1	97	75.965	Carlito_syrichta
ENSSLDG00000001950	snd1	97	67.005	ENSCAPG00000010677	SND1	97	67.005	Cavia_aperea
ENSSLDG00000001950	snd1	98	76.974	ENSCPOG00000006251	SND1	100	76.206	Cavia_porcellus
ENSSLDG00000001950	snd1	98	77.086	ENSCCAG00000036847	SND1	100	76.316	Cebus_capucinus
ENSSLDG00000001950	snd1	98	77.197	ENSCATG00000035214	SND1	100	76.425	Cercocebus_atys
ENSSLDG00000001950	snd1	98	77.197	ENSCLAG00000011796	SND1	100	76.425	Chinchilla_lanigera
ENSSLDG00000001950	snd1	98	77.197	ENSCSAG00000010182	SND1	100	76.425	Chlorocebus_sabaeus
ENSSLDG00000001950	snd1	72	75.248	ENSCHOG00000002218	SND1	86	75.248	Choloepus_hoffmanni
ENSSLDG00000001950	snd1	100	76.509	ENSCPBG00000018094	SND1	100	76.509	Chrysemys_picta_bellii
ENSSLDG00000001950	snd1	98	51.602	ENSCING00000000524	-	99	51.407	Ciona_intestinalis
ENSSLDG00000001950	snd1	99	51.743	ENSCSAVG00000008807	-	99	51.743	Ciona_savignyi
ENSSLDG00000001950	snd1	98	77.197	ENSCANG00000035119	SND1	100	76.425	Colobus_angolensis_palliatus
ENSSLDG00000001950	snd1	98	76.752	ENSCGRG00001022514	Snd1	100	75.987	Cricetulus_griseus_chok1gshd
ENSSLDG00000001950	snd1	97	76.862	ENSCGRG00000012277	Snd1	99	76.862	Cricetulus_griseus_crigri
ENSSLDG00000001950	snd1	100	86.608	ENSCSEG00000008661	snd1	100	86.608	Cynoglossus_semilaevis
ENSSLDG00000001950	snd1	100	87.267	ENSCVAG00000010316	snd1	100	87.267	Cyprinodon_variegatus
ENSSLDG00000001950	snd1	100	82.366	ENSDARG00000006766	snd1	100	82.366	Danio_rerio
ENSSLDG00000001950	snd1	97	75.618	ENSDNOG00000006795	SND1	100	75.618	Dasypus_novemcinctus
ENSSLDG00000001950	snd1	98	77.318	ENSDORG00000000336	Snd1	100	76.542	Dipodomys_ordii
ENSSLDG00000001950	snd1	98	46.371	FBgn0035121	Tudor-SN	99	46.030	Drosophila_melanogaster
ENSSLDG00000001950	snd1	89	91.667	ENSETEG00000000375	SND1	92	91.667	Echinops_telfairi
ENSSLDG00000001950	snd1	98	75.930	ENSEASG00005008513	SND1	100	75.189	Equus_asinus_asinus
ENSSLDG00000001950	snd1	98	76.974	ENSECAG00000011451	SND1	100	76.206	Equus_caballus
ENSSLDG00000001950	snd1	100	66.886	ENSEEUG00000014737	SND1	100	66.886	Erinaceus_europaeus
ENSSLDG00000001950	snd1	99	82.198	ENSELUG00000001805	snd1	96	82.198	Esox_lucius
ENSSLDG00000001950	snd1	100	76.425	ENSFCAG00000008289	SND1	100	76.425	Felis_catus
ENSSLDG00000001950	snd1	98	76.957	ENSFDAG00000015881	SND1	100	75.987	Fukomys_damarensis
ENSSLDG00000001950	snd1	100	85.177	ENSFHEG00000004093	snd1	99	86.348	Fundulus_heteroclitus
ENSSLDG00000001950	snd1	69	90.909	ENSGMOG00000018932	snd1	56	90.909	Gadus_morhua
ENSSLDG00000001950	snd1	100	88.364	ENSGAFG00000008421	snd1	100	88.364	Gambusia_affinis
ENSSLDG00000001950	snd1	100	58.561	ENSGACG00000019793	snd1	100	58.561	Gasterosteus_aculeatus
ENSSLDG00000001950	snd1	98	77.197	ENSGGOG00000009614	SND1	100	76.425	Gorilla_gorilla
ENSSLDG00000001950	snd1	100	87.706	ENSHBUG00000019135	snd1	100	87.706	Haplochromis_burtoni
ENSSLDG00000001950	snd1	98	76.752	ENSHGLG00000003618	SND1	100	75.987	Heterocephalus_glaber_female
ENSSLDG00000001950	snd1	98	76.752	ENSHGLG00100012449	SND1	99	76.752	Heterocephalus_glaber_male
ENSSLDG00000001950	snd1	100	85.510	ENSHCOG00000005266	snd1	100	85.510	Hippocampus_comes
ENSSLDG00000001950	snd1	99	81.559	ENSIPUG00000013279	snd1	99	81.559	Ictalurus_punctatus
ENSSLDG00000001950	snd1	98	77.197	ENSSTOG00000002140	SND1	100	76.425	Ictidomys_tridecemlineatus
ENSSLDG00000001950	snd1	98	77.086	ENSJJAG00000009561	Snd1	100	76.316	Jaculus_jaculus
ENSSLDG00000001950	snd1	100	88.255	ENSKMAG00000016997	snd1	100	88.255	Kryptolebias_marmoratus
ENSSLDG00000001950	snd1	100	87.377	ENSLBEG00000013563	snd1	100	87.377	Labrus_bergylta
ENSSLDG00000001950	snd1	98	81.147	ENSLOCG00000015537	snd1	99	80.413	Lepisosteus_oculatus
ENSSLDG00000001950	snd1	100	76.645	ENSLAFG00000009696	SND1	100	76.645	Loxodonta_africana
ENSSLDG00000001950	snd1	98	77.197	ENSMFAG00000038114	SND1	100	76.425	Macaca_fascicularis
ENSSLDG00000001950	snd1	98	77.197	ENSMMUG00000015432	SND1	100	76.425	Macaca_mulatta
ENSSLDG00000001950	snd1	98	77.197	ENSMNEG00000039808	SND1	100	77.339	Macaca_nemestrina
ENSSLDG00000001950	snd1	98	77.086	ENSMLEG00000029040	SND1	100	77.227	Mandrillus_leucophaeus
ENSSLDG00000001950	snd1	100	87.706	ENSMAMG00000011739	snd1	100	87.706	Mastacembelus_armatus
ENSSLDG00000001950	snd1	100	87.706	ENSMZEG00005005681	snd1	100	87.706	Maylandia_zebra
ENSSLDG00000001950	snd1	98	77.086	ENSMICG00000000097	SND1	100	76.316	Microcebus_murinus
ENSSLDG00000001950	snd1	98	77.308	ENSMOCG00000005040	Snd1	100	76.535	Microtus_ochrogaster
ENSSLDG00000001950	snd1	100	88.255	ENSMMOG00000001795	snd1	100	88.255	Mola_mola
ENSSLDG00000001950	snd1	98	76.641	ENSMODG00000015182	SND1	100	75.877	Monodelphis_domestica
ENSSLDG00000001950	snd1	100	88.145	ENSMALG00000012071	snd1	100	88.145	Monopterus_albus
ENSSLDG00000001950	snd1	98	77.069	MGP_CAROLIEiJ_G0028159	Snd1	100	76.096	Mus_caroli
ENSSLDG00000001950	snd1	98	77.069	ENSMUSG00000001424	Snd1	100	76.096	Mus_musculus
ENSSLDG00000001950	snd1	98	77.069	MGP_PahariEiJ_G0021917	Snd1	100	76.096	Mus_pahari
ENSSLDG00000001950	snd1	98	77.069	MGP_SPRETEiJ_G0029159	Snd1	100	76.096	Mus_spretus
ENSSLDG00000001950	snd1	100	76.425	ENSMPUG00000006545	SND1	100	76.425	Mustela_putorius_furo
ENSSLDG00000001950	snd1	97	76.143	ENSMLUG00000017130	SND1	99	76.143	Myotis_lucifugus
ENSSLDG00000001950	snd1	98	76.974	ENSNGAG00000011186	Snd1	100	76.206	Nannospalax_galili
ENSSLDG00000001950	snd1	100	87.706	ENSNBRG00000006681	snd1	100	87.706	Neolamprologus_brichardi
ENSSLDG00000001950	snd1	100	76.425	ENSNLEG00000012263	SND1	100	77.339	Nomascus_leucogenys
ENSSLDG00000001950	snd1	91	91.667	ENSOPRG00000013405	SND1	92	91.667	Ochotona_princeps
ENSSLDG00000001950	snd1	98	77.197	ENSODEG00000011502	SND1	100	76.645	Octodon_degus
ENSSLDG00000001950	snd1	100	87.816	ENSONIG00000011481	snd1	97	87.816	Oreochromis_niloticus
ENSSLDG00000001950	snd1	98	76.742	ENSOANG00000000817	SND1	98	76.742	Ornithorhynchus_anatinus
ENSSLDG00000001950	snd1	100	75.658	ENSOCUG00000001620	SND1	100	75.658	Oryctolagus_cuniculus
ENSSLDG00000001950	snd1	100	86.389	ENSORLG00000015201	snd1	100	86.389	Oryzias_latipes
ENSSLDG00000001950	snd1	100	86.608	ENSORLG00020013991	snd1	100	86.608	Oryzias_latipes_hni
ENSSLDG00000001950	snd1	100	86.608	ENSORLG00015012436	snd1	100	86.608	Oryzias_latipes_hsok
ENSSLDG00000001950	snd1	100	86.718	ENSOMEG00000006406	snd1	100	86.718	Oryzias_melastigma
ENSSLDG00000001950	snd1	98	77.026	ENSOGAG00000013356	SND1	94	76.258	Otolemur_garnettii
ENSSLDG00000001950	snd1	97	74.972	ENSOARG00000002149	SND1	100	74.972	Ovis_aries
ENSSLDG00000001950	snd1	99	76.164	ENSPPAG00000042947	SND1	100	76.316	Pan_paniscus
ENSSLDG00000001950	snd1	100	76.425	ENSPPRG00000004494	SND1	100	76.425	Panthera_pardus
ENSSLDG00000001950	snd1	100	76.316	ENSPTIG00000014214	SND1	100	76.316	Panthera_tigris_altaica
ENSSLDG00000001950	snd1	99	76.164	ENSPTRG00000023911	SND1	100	76.316	Pan_troglodytes
ENSSLDG00000001950	snd1	97	77.314	ENSPANG00000011997	SND1	99	77.314	Papio_anubis
ENSSLDG00000001950	snd1	99	80.044	ENSPKIG00000023494	snd1	99	79.607	Paramormyrops_kingsleyae
ENSSLDG00000001950	snd1	91	86.483	ENSPMGG00000003629	snd1	100	86.483	Periophthalmus_magnuspinnatus
ENSSLDG00000001950	snd1	98	77.086	ENSPEMG00000010240	Snd1	100	76.316	Peromyscus_maniculatus_bairdii
ENSSLDG00000001950	snd1	99	67.043	ENSPMAG00000007915	-	99	67.043	Petromyzon_marinus
ENSSLDG00000001950	snd1	98	77.086	ENSPCIG00000011561	SND1	100	76.316	Phascolarctos_cinereus
ENSSLDG00000001950	snd1	100	88.145	ENSPFOG00000001557	snd1	100	88.145	Poecilia_formosa
ENSSLDG00000001950	snd1	100	88.364	ENSPLAG00000018459	snd1	97	88.364	Poecilia_latipinna
ENSSLDG00000001950	snd1	100	88.364	ENSPMEG00000006803	snd1	100	88.364	Poecilia_mexicana
ENSSLDG00000001950	snd1	100	88.364	ENSPREG00000002189	snd1	100	88.364	Poecilia_reticulata
ENSSLDG00000001950	snd1	91	91.667	ENSPPYG00000017972	SND1	100	91.667	Pongo_abelii
ENSSLDG00000001950	snd1	100	70.833	ENSPCAG00000011305	SND1	100	70.833	Procavia_capensis
ENSSLDG00000001950	snd1	98	77.197	ENSPCOG00000026791	SND1	100	77.339	Propithecus_coquereli
ENSSLDG00000001950	snd1	98	76.536	ENSPVAG00000013945	SND1	100	75.771	Pteropus_vampyrus
ENSSLDG00000001950	snd1	100	87.596	ENSPNYG00000000932	snd1	100	87.596	Pundamilia_nyererei
ENSSLDG00000001950	snd1	99	82.747	ENSPNAG00000001206	snd1	99	82.747	Pygocentrus_nattereri
ENSSLDG00000001950	snd1	98	76.734	ENSRNOG00000031173	Snd1	100	75.761	Rattus_norvegicus
ENSSLDG00000001950	snd1	68	81.893	ENSRBIG00000027782	-	84	81.875	Rhinopithecus_bieti
ENSSLDG00000001950	snd1	98	77.197	ENSRROG00000033020	SND1	100	76.425	Rhinopithecus_roxellana
ENSSLDG00000001950	snd1	98	76.974	ENSSBOG00000032461	SND1	100	76.206	Saimiri_boliviensis_boliviensis
ENSSLDG00000001950	snd1	98	73.933	ENSSHAG00000015359	SND1	100	73.933	Sarcophilus_harrisii
ENSSLDG00000001950	snd1	98	80.710	ENSSFOG00015001103	snd1	99	80.065	Scleropages_formosus
ENSSLDG00000001950	snd1	100	88.694	ENSSMAG00000001932	snd1	95	88.694	Scophthalmus_maximus
ENSSLDG00000001950	snd1	100	92.316	ENSSDUG00000002699	snd1	94	92.316	Seriola_dumerili
ENSSLDG00000001950	snd1	85	77.358	ENSSARG00000004877	SND1	92	77.358	Sorex_araneus
ENSSLDG00000001950	snd1	62	72.789	ENSSPUG00000017586	SND1	96	73.830	Sphenodon_punctatus
ENSSLDG00000001950	snd1	64	84.808	ENSSPAG00000021398	snd1	99	85.279	Stegastes_partitus
ENSSLDG00000001950	snd1	98	76.974	ENSSSCG00000016590	SND1	100	76.206	Sus_scrofa
ENSSLDG00000001950	snd1	100	86.577	ENSTRUG00000014067	snd1	100	85.401	Takifugu_rubripes
ENSSLDG00000001950	snd1	100	85.950	ENSTNIG00000011019	snd1	100	85.950	Tetraodon_nigroviridis
ENSSLDG00000001950	snd1	93	76.028	ENSTBEG00000003999	SND1	100	76.028	Tupaia_belangeri
ENSSLDG00000001950	snd1	98	72.747	ENSTTRG00000006059	SND1	100	72.039	Tursiops_truncatus
ENSSLDG00000001950	snd1	67	69.974	ENSUAMG00000002820	-	89	69.974	Ursus_americanus
ENSSLDG00000001950	snd1	86	75.856	ENSUAMG00000005604	-	93	75.856	Ursus_americanus
ENSSLDG00000001950	snd1	100	76.425	ENSUMAG00000005960	SND1	100	76.425	Ursus_maritimus
ENSSLDG00000001950	snd1	72	91.667	ENSVPAG00000008302	SND1	74	91.667	Vicugna_pacos
ENSSLDG00000001950	snd1	100	76.425	ENSVVUG00000007226	SND1	100	76.425	Vulpes_vulpes
ENSSLDG00000001950	snd1	97	72.830	ENSXETG00000023043	snd1	100	72.945	Xenopus_tropicalis
ENSSLDG00000001950	snd1	92	85.511	ENSXCOG00000013629	snd1	99	85.511	Xiphophorus_couchianus
ENSSLDG00000001950	snd1	100	88.913	ENSXMAG00000011469	snd1	100	88.913	Xiphophorus_maculatus