EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000001957 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 8288 bases
Position: chrPEQF01099023.1:6116693-6124980
Accession: 111661339
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000002438	zf-C2H2	PF00096.26	7.3e-17	1	3
ENSSLDP00000002438	zf-C2H2	PF00096.26	7.3e-17	2	3
ENSSLDP00000002438	zf-C2H2	PF00096.26	7.3e-17	3	3
ENSSLDP00000002438	zf-met	PF12874.7	0.0003	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000002538	-	2370	XM_023414856	ENSSLDP00000002438	789 (aa)	XP_023270624	-

Gene Model

Click here to download ENSSLDG00000001957's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000001957's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000001957	-	53	58.282	ENSSLDG00000021973	prdm1b	54	67.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000001957	-	100	80.355	ENSAPOG00000014135	-	100	80.355	Acanthochromis_polyacanthus
ENSSLDG00000001957	-	100	77.722	ENSACIG00000009747	-	100	77.722	Amphilophus_citrinellus
ENSSLDG00000001957	-	74	37.760	ENSACIG00000014426	prdm1b	88	37.760	Amphilophus_citrinellus
ENSSLDG00000001957	-	53	55.828	ENSAPEG00000019826	prdm1b	54	64.286	Amphiprion_percula
ENSSLDG00000001957	-	87	54.335	ENSATEG00000021017	prdm1a	97	45.636	Anabas_testudineus
ENSSLDG00000001957	-	98	79.199	ENSATEG00000014034	-	99	79.199	Anabas_testudineus
ENSSLDG00000001957	-	75	37.881	ENSACLG00000005487	prdm1b	85	38.065	Astatotilapia_calliptera
ENSSLDG00000001957	-	99	42.215	ENSCSEG00000009707	prdm1a	99	44.870	Cynoglossus_semilaevis
ENSSLDG00000001957	-	59	54.762	ENSCVAG00000016746	prdm1b	61	62.500	Cyprinodon_variegatus
ENSSLDG00000001957	-	99	42.841	ENSCVAG00000019081	prdm1a	99	45.443	Cyprinodon_variegatus
ENSSLDG00000001957	-	66	49.686	ENSFHEG00000019848	prdm1b	87	49.686	Fundulus_heteroclitus
ENSSLDG00000001957	-	53	55.357	ENSGAFG00000016191	prdm1b	52	66.667	Gambusia_affinis
ENSSLDG00000001957	-	99	68.481	ENSGAFG00000013012	-	99	68.481	Gambusia_affinis
ENSSLDG00000001957	-	53	55.488	ENSGACG00000002716	prdm1b	59	55.488	Gasterosteus_aculeatus
ENSSLDG00000001957	-	75	38.126	ENSHBUG00000001475	prdm1b	90	38.126	Haplochromis_burtoni
ENSSLDG00000001957	-	88	39.060	ENSIPUG00000013740	prdm1b	80	55.263	Ictalurus_punctatus
ENSSLDG00000001957	-	94	44.151	ENSKMAG00000017597	prdm1a	96	44.697	Kryptolebias_marmoratus
ENSSLDG00000001957	-	99	72.532	ENSKMAG00000016247	-	99	72.532	Kryptolebias_marmoratus
ENSSLDG00000001957	-	59	56.790	ENSLBEG00000020955	prdm1b	60	65.714	Labrus_bergylta
ENSSLDG00000001957	-	61	57.303	ENSLOCG00000004978	prdm1b	62	57.303	Lepisosteus_oculatus
ENSSLDG00000001957	-	76	37.441	ENSMZEG00005026361	prdm1b	88	37.441	Maylandia_zebra
ENSSLDG00000001957	-	98	79.922	ENSMALG00000000462	-	99	79.922	Monopterus_albus
ENSSLDG00000001957	-	81	35.650	ENSMALG00000011410	prdm1b	97	35.650	Monopterus_albus
ENSSLDG00000001957	-	55	56.425	ENSONIG00000013583	prdm1b	61	56.425	Oreochromis_niloticus
ENSSLDG00000001957	-	100	76.962	ENSONIG00000014709	-	100	76.962	Oreochromis_niloticus
ENSSLDG00000001957	-	55	53.114	ENSPKIG00000022335	prdm1b	70	53.988	Paramormyrops_kingsleyae
ENSSLDG00000001957	-	55	54.902	ENSPFOG00000003103	prdm1b	67	54.902	Poecilia_formosa
ENSSLDG00000001957	-	53	55.357	ENSPREG00000011327	prdm1b	52	64.789	Poecilia_reticulata
ENSSLDG00000001957	-	93	44.615	ENSPNAG00000028442	prdm1a	92	44.615	Pygocentrus_nattereri
ENSSLDG00000001957	-	53	56.225	ENSSFOG00015021896	prdm1b	61	56.225	Scleropages_formosus
ENSSLDG00000001957	-	58	56.970	ENSSMAG00000020467	prdm1b	57	75.510	Scophthalmus_maximus
ENSSLDG00000001957	-	100	82.174	ENSSMAG00000017518	-	100	82.174	Scophthalmus_maximus
ENSSLDG00000001957	-	100	98.479	ENSSDUG00000000524	-	100	98.479	Seriola_dumerili
ENSSLDG00000001957	-	73	38.333	ENSSPAG00000000803	prdm1b	95	38.235	Stegastes_partitus
ENSSLDG00000001957	-	100	81.519	ENSSPAG00000009830	-	100	81.519	Stegastes_partitus
ENSSLDG00000001957	-	79	42.415	ENSTNIG00000003926	prdm1a	99	42.837	Tetraodon_nigroviridis
ENSSLDG00000001957	-	55	54.307	ENSXCOG00000018920	prdm1b	62	55.357	Xiphophorus_couchianus
ENSSLDG00000001957	-	55	54.307	ENSXMAG00000016765	prdm1b	54	67.188	Xiphophorus_maculatus