EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000002012 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 9551 bases
Position: chrPEQF01098458.1:288342-297892
Accession: 111652430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000002482	RRM_1	PF00076.22	4.2e-61	1	4
ENSSLDP00000002482	RRM_1	PF00076.22	4.2e-61	2	4
ENSSLDP00000002482	RRM_1	PF00076.22	4.2e-61	3	4
ENSSLDP00000002482	RRM_1	PF00076.22	4.2e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000002582	-	4168	XM_023402694	ENSSLDP00000002482	702 (aa)	XP_023258462	UPI000C6F59DF

Gene Model

Click here to download ENSSLDG00000002012's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000002012's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000002012	ncl	58	43.878	ENSSLDG00000015784	-	72	42.623

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000002012	ncl	64	91.733	ENSAPOG00000023888	ncl	65	89.610	Acanthochromis_polyacanthus
ENSSLDG00000002012	ncl	67	38.277	ENSAPOG00000014534	-	86	40.334	Acanthochromis_polyacanthus
ENSSLDG00000002012	ncl	54	81.117	ENSACIG00000013234	ncl	62	80.533	Amphilophus_citrinellus
ENSSLDG00000002012	ncl	88	39.518	ENSAOCG00000014792	-	61	40.464	Amphiprion_ocellaris
ENSSLDG00000002012	ncl	60	90.521	ENSAOCG00000003133	ncl	69	88.272	Amphiprion_ocellaris
ENSSLDG00000002012	ncl	88	39.759	ENSAPEG00000013612	-	60	40.722	Amphiprion_percula
ENSSLDG00000002012	ncl	60	90.499	ENSAPEG00000002769	ncl	69	87.910	Amphiprion_percula
ENSSLDG00000002012	ncl	66	91.342	ENSATEG00000013343	ncl	69	90.664	Anabas_testudineus
ENSSLDG00000002012	ncl	69	41.352	ENSATEG00000019862	-	85	44.203	Anabas_testudineus
ENSSLDG00000002012	ncl	53	64.062	ENSACAG00000001006	-	52	63.708	Anolis_carolinensis
ENSSLDG00000002012	ncl	53	78.526	ENSACLG00000026031	ncl	85	78.526	Astatotilapia_calliptera
ENSSLDG00000002012	ncl	52	73.510	ENSAMXG00000001647	ncl	84	73.510	Astyanax_mexicanus
ENSSLDG00000002012	ncl	54	44.000	ENSCHIG00000012665	-	53	43.832	Capra_hircus
ENSSLDG00000002012	ncl	65	57.851	ENSCPBG00000016444	-	56	61.842	Chrysemys_picta_bellii
ENSSLDG00000002012	ncl	55	87.393	ENSCSEG00000015089	ncl	61	84.507	Cynoglossus_semilaevis
ENSSLDG00000002012	ncl	53	83.333	ENSCVAG00000012600	ncl	61	82.464	Cyprinodon_variegatus
ENSSLDG00000002012	ncl	60	76.485	ENSDARG00000002710	ncl	83	76.849	Danio_rerio
ENSSLDG00000002012	ncl	56	43.781	ENSDNOG00000031611	-	67	45.093	Dasypus_novemcinctus
ENSSLDG00000002012	ncl	55	43.218	ENSDNOG00000040257	-	71	46.154	Dasypus_novemcinctus
ENSSLDG00000002012	ncl	76	44.728	ENSEBUG00000016173	ncl	58	46.593	Eptatretus_burgeri
ENSSLDG00000002012	ncl	60	74.824	ENSELUG00000006033	ncl	64	76.168	Esox_lucius
ENSSLDG00000002012	ncl	60	48.113	ENSELUG00000022826	-	80	49.866	Esox_lucius
ENSSLDG00000002012	ncl	53	59.318	ENSFALG00000007592	-	54	59.318	Ficedula_albicollis
ENSSLDG00000002012	ncl	53	78.933	ENSFHEG00000018000	ncl	66	79.009	Fundulus_heteroclitus
ENSSLDG00000002012	ncl	59	68.841	ENSGMOG00000001341	ncl	67	68.545	Gadus_morhua
ENSSLDG00000002012	ncl	53	60.847	ENSGALG00000032930	NCL	55	60.847	Gallus_gallus
ENSSLDG00000002012	ncl	89	68.991	ENSGAFG00000015375	ncl	64	82.710	Gambusia_affinis
ENSSLDG00000002012	ncl	88	77.600	ENSGACG00000008970	ncl	75	78.079	Gasterosteus_aculeatus
ENSSLDG00000002012	ncl	65	56.907	ENSGAGG00000013330	-	56	62.005	Gopherus_agassizii
ENSSLDG00000002012	ncl	53	81.183	ENSHBUG00000006869	ncl	69	78.144	Haplochromis_burtoni
ENSSLDG00000002012	ncl	68	79.678	ENSHCOG00000010234	ncl	69	76.861	Hippocampus_comes
ENSSLDG00000002012	ncl	52	74.837	ENSIPUG00000024556	ncl	81	74.510	Ictalurus_punctatus
ENSSLDG00000002012	ncl	60	83.971	ENSKMAG00000008111	ncl	65	81.304	Kryptolebias_marmoratus
ENSSLDG00000002012	ncl	52	42.338	ENSLBEG00000014278	-	82	42.308	Labrus_bergylta
ENSSLDG00000002012	ncl	65	41.277	ENSLBEG00000007915	-	66	42.931	Labrus_bergylta
ENSSLDG00000002012	ncl	60	89.713	ENSLBEG00000019073	ncl	63	89.810	Labrus_bergylta
ENSSLDG00000002012	ncl	65	60.211	ENSLACG00000009328	ncl	63	62.269	Latimeria_chalumnae
ENSSLDG00000002012	ncl	55	53.985	ENSLACG00000022167	-	79	54.545	Latimeria_chalumnae
ENSSLDG00000002012	ncl	66	64.831	ENSLOCG00000004828	ncl	63	68.443	Lepisosteus_oculatus
ENSSLDG00000002012	ncl	88	80.317	ENSMAMG00000002086	ncl	56	86.609	Mastacembelus_armatus
ENSSLDG00000002012	ncl	60	40.590	ENSMAMG00000003479	-	69	40.779	Mastacembelus_armatus
ENSSLDG00000002012	ncl	53	81.183	ENSMZEG00005017438	ncl	69	78.144	Maylandia_zebra
ENSSLDG00000002012	ncl	52	60.054	ENSMGAG00000008147	-	89	59.730	Meleagris_gallopavo
ENSSLDG00000002012	ncl	54	89.028	ENSMMOG00000008553	ncl	85	88.715	Mola_mola
ENSSLDG00000002012	ncl	52	57.702	ENSMODG00000002470	-	54	57.403	Monodelphis_domestica
ENSSLDG00000002012	ncl	93	78.303	ENSMALG00000014827	ncl	74	83.514	Monopterus_albus
ENSSLDG00000002012	ncl	52	80.851	ENSNBRG00000000146	-	86	80.851	Neolamprologus_brichardi
ENSSLDG00000002012	ncl	52	80.851	ENSNBRG00000001232	ncl	82	80.851	Neolamprologus_brichardi
ENSSLDG00000002012	ncl	52	58.777	ENSMEUG00000012335	-	54	58.730	Notamacropus_eugenii
ENSSLDG00000002012	ncl	53	81.183	ENSONIG00000012508	ncl	69	78.029	Oreochromis_niloticus
ENSSLDG00000002012	ncl	54	39.108	ENSONIG00000010631	-	97	38.503	Oreochromis_niloticus
ENSSLDG00000002012	ncl	53	60.363	ENSOANG00000008732	-	61	60.363	Ornithorhynchus_anatinus
ENSSLDG00000002012	ncl	55	38.346	ENSORLG00000004645	-	83	38.642	Oryzias_latipes
ENSSLDG00000002012	ncl	60	36.384	ENSORLG00020003497	-	74	38.642	Oryzias_latipes_hni
ENSSLDG00000002012	ncl	55	39.303	ENSORLG00015006613	-	77	39.164	Oryzias_latipes_hsok
ENSSLDG00000002012	ncl	60	80.861	ENSORLG00015013815	ncl	86	85.256	Oryzias_latipes_hsok
ENSSLDG00000002012	ncl	56	39.066	ENSOMEG00000015864	-	82	38.961	Oryzias_melastigma
ENSSLDG00000002012	ncl	53	86.400	ENSOMEG00000020786	ncl	63	84.516	Oryzias_melastigma
ENSSLDG00000002012	ncl	65	76.484	ENSPKIG00000002604	ncl	65	74.730	Paramormyrops_kingsleyae
ENSSLDG00000002012	ncl	53	61.818	ENSPSIG00000002361	-	54	61.198	Pelodiscus_sinensis
ENSSLDG00000002012	ncl	52	81.494	ENSPMGG00000004709	ncl	84	81.046	Periophthalmus_magnuspinnatus
ENSSLDG00000002012	ncl	61	73.002	ENSPFOG00000024205	ncl	58	82.558	Poecilia_formosa
ENSSLDG00000002012	ncl	66	67.807	ENSPLAG00000024026	ncl	86	82.984	Poecilia_latipinna
ENSSLDG00000002012	ncl	61	73.377	ENSPMEG00000006000	ncl	86	83.683	Poecilia_mexicana
ENSSLDG00000002012	ncl	59	72.275	ENSPNAG00000006192	ncl	58	72.131	Pygocentrus_nattereri
ENSSLDG00000002012	ncl	52	53.175	ENSSHAG00000002702	-	59	52.756	Sarcophilus_harrisii
ENSSLDG00000002012	ncl	64	73.289	ENSSFOG00015008583	ncl	67	78.505	Scleropages_formosus
ENSSLDG00000002012	ncl	52	43.324	ENSSFOG00015013153	-	76	46.429	Scleropages_formosus
ENSSLDG00000002012	ncl	89	80.063	ENSSMAG00000021241	ncl	69	82.992	Scophthalmus_maximus
ENSSLDG00000002012	ncl	59	42.282	ENSSMAG00000007582	-	61	44.619	Scophthalmus_maximus
ENSSLDG00000002012	ncl	86	100.000	ENSSDUG00000006128	ncl	98	93.187	Seriola_dumerili
ENSSLDG00000002012	ncl	61	41.048	ENSSDUG00000010922	-	70	43.896	Seriola_dumerili
ENSSLDG00000002012	ncl	53	59.694	ENSSPUG00000008244	-	60	59.694	Sphenodon_punctatus
ENSSLDG00000002012	ncl	52	92.199	ENSSPAG00000002637	ncl	82	92.199	Stegastes_partitus
ENSSLDG00000002012	ncl	58	42.169	ENSSPAG00000001859	-	61	42.448	Stegastes_partitus
ENSSLDG00000002012	ncl	53	62.766	ENSXETG00000009517	ncl	54	63.298	Xenopus_tropicalis
ENSSLDG00000002012	ncl	54	40.979	ENSXCOG00000007369	-	89	41.316	Xiphophorus_couchianus
ENSSLDG00000002012	ncl	55	62.953	ENSXCOG00000003524	ncl	99	63.212	Xiphophorus_couchianus
ENSSLDG00000002012	ncl	77	78.269	ENSXMAG00000005914	ncl	78	81.980	Xiphophorus_maculatus