EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000002077 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 18508 bases
Position: chrPEQF01098966.1:9393-27900
Accession: 111659769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000002564	RRM_1	PF00076.22	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000002673	-	6309	XM_023412803	ENSSLDP00000002564	1637 (aa)	XP_023268571	-

Gene Model

Click here to download ENSSLDG00000002077's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000002077's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000002077	tnrc6c2	100	58.165	ENSSLDG00000025613	tnrc6c1	100	57.275

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000002077	tnrc6c2	100	90.937	ENSAOCG00000017648	tnrc6c2	87	90.937	Amphiprion_ocellaris
ENSSLDG00000002077	tnrc6c2	95	90.829	ENSATEG00000003656	tnrc6c2	57	90.829	Anabas_testudineus
ENSSLDG00000002077	tnrc6c2	100	90.201	ENSACLG00000006469	tnrc6c2	88	89.897	Astatotilapia_calliptera
ENSSLDG00000002077	tnrc6c2	100	59.381	ENSAMXG00000009579	tnrc6c2	99	58.170	Astyanax_mexicanus
ENSSLDG00000002077	tnrc6c2	100	59.425	ENSDARG00000103851	tnrc6c2	100	56.758	Danio_rerio
ENSSLDG00000002077	tnrc6c2	96	56.068	ENSELUG00000008149	-	88	54.535	Esox_lucius
ENSSLDG00000002077	tnrc6c2	100	61.815	ENSELUG00000007206	tnrc6c2	99	61.162	Esox_lucius
ENSSLDG00000002077	tnrc6c2	100	82.625	ENSFHEG00000003901	tnrc6c2	100	83.597	Fundulus_heteroclitus
ENSSLDG00000002077	tnrc6c2	57	82.273	ENSGACG00000019401	tnrc6c2	90	79.219	Gasterosteus_aculeatus
ENSSLDG00000002077	tnrc6c2	100	90.262	ENSHBUG00000018310	tnrc6c2	88	89.957	Haplochromis_burtoni
ENSSLDG00000002077	tnrc6c2	100	83.465	ENSHCOG00000017802	tnrc6c2	87	81.890	Hippocampus_comes
ENSSLDG00000002077	tnrc6c2	100	55.649	ENSIPUG00000022767	tnrc6c2	99	53.198	Ictalurus_punctatus
ENSSLDG00000002077	tnrc6c2	100	91.601	ENSMAMG00000001718	tnrc6c2	100	91.722	Mastacembelus_armatus
ENSSLDG00000002077	tnrc6c2	100	90.262	ENSMZEG00005023905	tnrc6c2	88	89.957	Maylandia_zebra
ENSSLDG00000002077	tnrc6c2	100	89.178	ENSMALG00000020932	tnrc6c2	100	89.541	Monopterus_albus
ENSSLDG00000002077	tnrc6c2	95	90.419	ENSNBRG00000000452	tnrc6c2	57	90.529	Neolamprologus_brichardi
ENSSLDG00000002077	tnrc6c2	98	85.072	ENSONIG00000018123	tnrc6c2	97	94.304	Oreochromis_niloticus
ENSSLDG00000002077	tnrc6c2	100	84.044	ENSORLG00000003327	tnrc6c2	87	83.496	Oryzias_latipes
ENSSLDG00000002077	tnrc6c2	100	83.618	ENSORLG00020010730	tnrc6c2	87	83.252	Oryzias_latipes_hni
ENSSLDG00000002077	tnrc6c2	100	83.983	ENSORLG00015009232	tnrc6c2	87	83.618	Oryzias_latipes_hsok
ENSSLDG00000002077	tnrc6c2	100	84.185	ENSOMEG00000017952	tnrc6c2	87	84.246	Oryzias_melastigma
ENSSLDG00000002077	tnrc6c2	95	77.943	ENSPFOG00000011590	tnrc6c2	53	78.791	Poecilia_formosa
ENSSLDG00000002077	tnrc6c2	100	77.989	ENSPLAG00000006992	tnrc6c2	60	86.934	Poecilia_latipinna
ENSSLDG00000002077	tnrc6c2	100	84.457	ENSPMEG00000012946	tnrc6c2	93	84.699	Poecilia_mexicana
ENSSLDG00000002077	tnrc6c2	100	78.808	ENSPREG00000015823	tnrc6c2	100	79.350	Poecilia_reticulata
ENSSLDG00000002077	tnrc6c2	100	89.301	ENSPNYG00000002582	tnrc6c2	100	89.058	Pundamilia_nyererei
ENSSLDG00000002077	tnrc6c2	100	58.848	ENSPNAG00000026838	tnrc6c2	99	58.654	Pygocentrus_nattereri
ENSSLDG00000002077	tnrc6c2	100	90.061	ENSSMAG00000015145	tnrc6c2	100	89.879	Scophthalmus_maximus
ENSSLDG00000002077	tnrc6c2	100	99.450	ENSSDUG00000020741	tnrc6c2	100	99.450	Seriola_dumerili
ENSSLDG00000002077	tnrc6c2	100	92.097	ENSSPAG00000013052	tnrc6c2	87	92.401	Stegastes_partitus
ENSSLDG00000002077	tnrc6c2	92	85.542	ENSTNIG00000004178	tnrc6c2	89	86.871	Tetraodon_nigroviridis
ENSSLDG00000002077	tnrc6c2	55	86.002	ENSXCOG00000013252	tnrc6c2	100	79.358	Xiphophorus_couchianus
ENSSLDG00000002077	tnrc6c2	100	84.457	ENSXMAG00000006739	tnrc6c2	100	84.942	Xiphophorus_maculatus