EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000002379 (Gene tree)
Gene ID: -
Gene Symbol: si:ch1073-385f13.3
Alias: -
Full Name: si:ch1073-385f13.3
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 4005 bases
Position: chrPEQF01096753.1:3438482-3442486
Accession: ZDB-GENE-131127-357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000002980	RNase_T	PF00929.24	1.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000003091	-	1264	-	ENSSLDP00000002980	197 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000002379's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000002379's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000002379	si:ch1073-385f13.3	74	42.177	ENSSLDG00000000646	-	75	42.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000002379	si:ch1073-385f13.3	95	38.222	ENSAOCG00000011593	si:ch1073-296i8.2	80	38.222	Amphiprion_ocellaris
ENSSLDG00000002379	si:ch1073-385f13.3	95	38.053	ENSAPEG00000012492	si:ch1073-296i8.2	80	38.053	Amphiprion_percula
ENSSLDG00000002379	si:ch1073-385f13.3	95	44.444	ENSATEG00000021547	si:ch1073-296i8.2	73	44.444	Anabas_testudineus
ENSSLDG00000002379	si:ch1073-385f13.3	99	72.308	ENSATEG00000021542	si:ch1073-385f13.3	99	72.308	Anabas_testudineus
ENSSLDG00000002379	si:ch1073-385f13.3	92	67.956	ENSACLG00000023991	-	55	67.956	Astatotilapia_calliptera
ENSSLDG00000002379	si:ch1073-385f13.3	98	67.358	ENSCVAG00000001533	-	98	67.358	Cyprinodon_variegatus
ENSSLDG00000002379	si:ch1073-385f13.3	93	47.568	ENSDARG00000093773	si:ch1073-296i8.2	78	47.568	Danio_rerio
ENSSLDG00000002379	si:ch1073-385f13.3	97	52.577	ENSDARG00000092584	si:ch1073-385f13.3	79	52.577	Danio_rerio
ENSSLDG00000002379	si:ch1073-385f13.3	96	47.644	ENSFHEG00000018188	si:ch1073-296i8.2	77	47.644	Fundulus_heteroclitus
ENSSLDG00000002379	si:ch1073-385f13.3	99	69.231	ENSFHEG00000018181	-	98	69.231	Fundulus_heteroclitus
ENSSLDG00000002379	si:ch1073-385f13.3	89	46.927	ENSGMOG00000019335	si:ch1073-296i8.2	99	46.927	Gadus_morhua
ENSSLDG00000002379	si:ch1073-385f13.3	95	58.824	ENSGMOG00000019565	-	99	58.824	Gadus_morhua
ENSSLDG00000002379	si:ch1073-385f13.3	90	46.111	ENSGACG00000007185	si:ch1073-296i8.2	99	46.111	Gasterosteus_aculeatus
ENSSLDG00000002379	si:ch1073-385f13.3	99	72.308	ENSHBUG00000007541	si:ch1073-385f13.3	99	72.308	Haplochromis_burtoni
ENSSLDG00000002379	si:ch1073-385f13.3	98	44.898	ENSHCOG00000008574	si:ch1073-296i8.2	82	44.898	Hippocampus_comes
ENSSLDG00000002379	si:ch1073-385f13.3	97	71.728	ENSKMAG00000015669	-	97	71.728	Kryptolebias_marmoratus
ENSSLDG00000002379	si:ch1073-385f13.3	95	48.677	ENSKMAG00000015660	si:ch1073-296i8.2	84	48.677	Kryptolebias_marmoratus
ENSSLDG00000002379	si:ch1073-385f13.3	88	52.841	ENSLBEG00000019623	si:ch1073-296i8.2	69	52.841	Labrus_bergylta
ENSSLDG00000002379	si:ch1073-385f13.3	94	55.080	ENSLOCG00000014933	-	93	55.080	Lepisosteus_oculatus
ENSSLDG00000002379	si:ch1073-385f13.3	95	69.681	ENSMAMG00000023075	si:ch1073-385f13.3	97	69.681	Mastacembelus_armatus
ENSSLDG00000002379	si:ch1073-385f13.3	72	46.154	ENSMMOG00000018979	si:ch1073-296i8.2	67	46.154	Mola_mola
ENSSLDG00000002379	si:ch1073-385f13.3	98	73.057	ENSMALG00000015952	si:ch1073-385f13.3	99	73.057	Monopterus_albus
ENSSLDG00000002379	si:ch1073-385f13.3	99	71.282	ENSONIG00000012794	si:ch1073-385f13.3	99	71.282	Oreochromis_niloticus
ENSSLDG00000002379	si:ch1073-385f13.3	93	46.237	ENSORLG00000023958	si:ch1073-296i8.2	84	46.237	Oryzias_latipes
ENSSLDG00000002379	si:ch1073-385f13.3	99	70.256	ENSORLG00000030645	si:ch1073-385f13.3	88	70.256	Oryzias_latipes
ENSSLDG00000002379	si:ch1073-385f13.3	93	46.237	ENSORLG00020021912	si:ch1073-296i8.2	84	46.237	Oryzias_latipes_hni
ENSSLDG00000002379	si:ch1073-385f13.3	99	69.231	ENSORLG00020021903	-	99	69.231	Oryzias_latipes_hni
ENSSLDG00000002379	si:ch1073-385f13.3	93	46.237	ENSORLG00015015303	si:ch1073-296i8.2	84	46.237	Oryzias_latipes_hsok
ENSSLDG00000002379	si:ch1073-385f13.3	94	51.064	ENSPKIG00000023552	-	87	51.064	Paramormyrops_kingsleyae
ENSSLDG00000002379	si:ch1073-385f13.3	97	61.257	ENSPFOG00000005521	si:ch1073-385f13.3	97	61.257	Poecilia_formosa
ENSSLDG00000002379	si:ch1073-385f13.3	94	61.828	ENSPFOG00000021742	-	98	61.828	Poecilia_formosa
ENSSLDG00000002379	si:ch1073-385f13.3	97	61.257	ENSPMEG00000013096	si:ch1073-385f13.3	97	61.257	Poecilia_mexicana
ENSSLDG00000002379	si:ch1073-385f13.3	94	62.366	ENSPMEG00000013087	si:ch1073-385f13.3	97	62.366	Poecilia_mexicana
ENSSLDG00000002379	si:ch1073-385f13.3	93	53.333	ENSPREG00000013537	-	80	53.333	Poecilia_reticulata
ENSSLDG00000002379	si:ch1073-385f13.3	94	53.763	ENSPNAG00000018956	si:ch1073-385f13.3	99	53.763	Pygocentrus_nattereri
ENSSLDG00000002379	si:ch1073-385f13.3	95	44.974	ENSSMAG00000004874	si:ch1073-296i8.2	72	44.974	Scophthalmus_maximus
ENSSLDG00000002379	si:ch1073-385f13.3	94	46.032	ENSSPAG00000012797	si:ch1073-296i8.2	95	46.032	Stegastes_partitus
ENSSLDG00000002379	si:ch1073-385f13.3	93	44.865	ENSTNIG00000010399	si:ch1073-296i8.2	80	44.865	Tetraodon_nigroviridis
ENSSLDG00000002379	si:ch1073-385f13.3	97	62.827	ENSXMAG00000021869	si:ch1073-385f13.3	97	62.827	Xiphophorus_maculatus