EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000002538 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: ribosomal RNA processing protein 1 homolog B-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 19670 bases
Position: chrPEQF01099055.1:598714-618383
Accession: 111663430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000003229	Nop52	PF05997.12	1.4e-63	1	1
ENSSLDP00000003207	Nop52	PF05997.12	1.5e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000003319	-	4090	XM_023417626	ENSSLDP00000003207	938 (aa)	XP_023273394	UPI000C6F7431
ENSSLDT00000003341	-	4245	XM_023417627	ENSSLDP00000003229	883 (aa)	XP_023273395	UPI000C6FC30C

Gene Model

Click here to download ENSSLDG00000002538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000002538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000002538	-	55	49.650	ENSG00000160208	RRP1B	65	50.382	Homo_sapiens
ENSSLDG00000002538	-	100	57.600	ENSAPOG00000007490	-	100	57.396	Acanthochromis_polyacanthus
ENSSLDG00000002538	-	54	45.407	ENSAMEG00000011401	RRP1B	68	47.059	Ailuropoda_melanoleuca
ENSSLDG00000002538	-	98	53.911	ENSAOCG00000017894	-	100	80.000	Amphiprion_ocellaris
ENSSLDG00000002538	-	100	55.839	ENSAPEG00000024150	-	100	57.057	Amphiprion_percula
ENSSLDG00000002538	-	53	49.864	ENSACAG00000017851	RRP1B	61	50.402	Anolis_carolinensis
ENSSLDG00000002538	-	54	49.618	ENSANAG00000034889	RRP1B	65	49.618	Aotus_nancymaae
ENSSLDG00000002538	-	54	49.219	ENSBTAG00000017418	RRP1B	66	50.000	Bos_taurus
ENSSLDG00000002538	-	54	47.328	ENSCJAG00000017077	RRP1B	66	48.837	Callithrix_jacchus
ENSSLDG00000002538	-	54	45.802	ENSCAFG00020018901	RRP1B	69	48.837	Canis_lupus_dingo
ENSSLDG00000002538	-	55	48.837	ENSCHIG00000021519	RRP1B	67	48.837	Capra_hircus
ENSSLDG00000002538	-	53	43.750	ENSCPOG00000002396	RRP1B	69	46.512	Cavia_porcellus
ENSSLDG00000002538	-	54	48.462	ENSCCAG00000029384	RRP1B	65	48.462	Cebus_capucinus
ENSSLDG00000002538	-	55	48.951	ENSCATG00000017423	RRP1B	65	49.618	Cercocebus_atys
ENSSLDG00000002538	-	50	49.231	ENSCLAG00000005622	RRP1B	68	49.231	Chinchilla_lanigera
ENSSLDG00000002538	-	55	49.296	ENSCSAG00000007961	RRP1B	66	50.000	Chlorocebus_sabaeus
ENSSLDG00000002538	-	60	52.044	ENSCPBG00000010310	RRP1B	60	50.904	Chrysemys_picta_bellii
ENSSLDG00000002538	-	55	47.917	ENSCANG00000040952	RRP1B	65	48.485	Colobus_angolensis_palliatus
ENSSLDG00000002538	-	54	46.939	ENSCGRG00001023882	-	60	60.294	Cricetulus_griseus_chok1gshd
ENSSLDG00000002538	-	54	46.939	ENSCGRG00001010889	-	66	47.482	Cricetulus_griseus_chok1gshd
ENSSLDG00000002538	-	51	46.939	ENSCGRG00000001553	Rrp1b	62	47.482	Cricetulus_griseus_crigri
ENSSLDG00000002538	-	51	68.687	ENSCSEG00000020711	-	82	68.687	Cynoglossus_semilaevis
ENSSLDG00000002538	-	54	56.497	ENSDARG00000103337	rrp1	62	55.827	Danio_rerio
ENSSLDG00000002538	-	55	45.714	ENSDNOG00000032774	RRP1B	66	46.512	Dasypus_novemcinctus
ENSSLDG00000002538	-	50	53.763	ENSETEG00000019489	RRP1B	60	56.383	Echinops_telfairi
ENSSLDG00000002538	-	54	48.855	ENSEASG00005001687	RRP1B	66	48.855	Equus_asinus_asinus
ENSSLDG00000002538	-	54	49.242	ENSECAG00000018018	RRP1B	66	49.242	Equus_caballus
ENSSLDG00000002538	-	52	62.737	ENSELUG00000015885	-	88	68.579	Esox_lucius
ENSSLDG00000002538	-	54	43.878	ENSFCAG00000010272	RRP1B	68	45.736	Felis_catus
ENSSLDG00000002538	-	50	40.535	ENSFDAG00000013728	RRP1	74	48.000	Fukomys_damarensis
ENSSLDG00000002538	-	51	45.205	ENSFDAG00000010899	RRP1B	63	46.970	Fukomys_damarensis
ENSSLDG00000002538	-	71	68.766	ENSFHEG00000016314	-	51	71.594	Fundulus_heteroclitus
ENSSLDG00000002538	-	60	64.420	ENSGMOG00000001953	-	74	63.708	Gadus_morhua
ENSSLDG00000002538	-	59	51.213	ENSGALG00000035696	RRP1B	62	52.279	Gallus_gallus
ENSSLDG00000002538	-	85	57.843	ENSGACG00000001438	rrp1	100	57.843	Gasterosteus_aculeatus
ENSSLDG00000002538	-	60	52.316	ENSGAGG00000000375	RRP1B	62	52.162	Gopherus_agassizii
ENSSLDG00000002538	-	55	49.650	ENSGGOG00000012069	RRP1B	65	50.382	Gorilla_gorilla
ENSSLDG00000002538	-	54	47.287	ENSHGLG00000004968	RRP1B	65	47.287	Heterocephalus_glaber_female
ENSSLDG00000002538	-	58	56.250	ENSIPUG00000000673	-	72	56.614	Ictalurus_punctatus
ENSSLDG00000002538	-	51	45.609	ENSSTOG00000011790	RRP1B	67	45.522	Ictidomys_tridecemlineatus
ENSSLDG00000002538	-	50	50.360	ENSJJAG00000021279	Rrp1b	62	51.562	Jaculus_jaculus
ENSSLDG00000002538	-	66	68.193	ENSKMAG00000005539	rrp1	86	69.565	Kryptolebias_marmoratus
ENSSLDG00000002538	-	54	52.957	ENSLACG00000017332	-	65	52.941	Latimeria_chalumnae
ENSSLDG00000002538	-	55	59.102	ENSLOCG00000004064	-	66	61.662	Lepisosteus_oculatus
ENSSLDG00000002538	-	56	43.860	ENSLAFG00000000766	RRP1B	86	44.800	Loxodonta_africana
ENSSLDG00000002538	-	55	48.252	ENSMFAG00000039152	RRP1B	66	48.855	Macaca_fascicularis
ENSSLDG00000002538	-	51	52.941	ENSMMUG00000000104	RRP1B	62	54.737	Macaca_mulatta
ENSSLDG00000002538	-	55	46.853	ENSMNEG00000034269	RRP1B	66	47.328	Macaca_nemestrina
ENSSLDG00000002538	-	51	49.650	ENSMLEG00000040044	RRP1B	62	50.382	Mandrillus_leucophaeus
ENSSLDG00000002538	-	100	57.714	ENSMAMG00000007131	-	100	55.429	Mastacembelus_armatus
ENSSLDG00000002538	-	52	50.674	ENSMGAG00000014591	RRP1B	61	50.980	Meleagris_gallopavo
ENSSLDG00000002538	-	56	46.575	ENSMAUG00000021508	Rrp1b	62	48.438	Mesocricetus_auratus
ENSSLDG00000002538	-	54	49.618	ENSMICG00000004686	RRP1B	68	49.618	Microcebus_murinus
ENSSLDG00000002538	-	52	43.357	ENSMOCG00000001117	Rrp1b	63	45.669	Microtus_ochrogaster
ENSSLDG00000002538	-	53	49.311	ENSMODG00000021033	RRP1B	64	48.387	Monodelphis_domestica
ENSSLDG00000002538	-	57	44.595	MGP_CAROLIEiJ_G0021376	Rrp1b	58	57.353	Mus_caroli
ENSSLDG00000002538	-	52	43.919	ENSMUSG00000058392	Rrp1b	58	58.824	Mus_musculus
ENSSLDG00000002538	-	54	44.295	MGP_PahariEiJ_G0023695	Rrp1b	58	57.353	Mus_pahari
ENSSLDG00000002538	-	53	43.919	MGP_SPRETEiJ_G0022290	Rrp1b	58	58.824	Mus_spretus
ENSSLDG00000002538	-	54	47.244	ENSMLUG00000007738	RRP1B	66	47.244	Myotis_lucifugus
ENSSLDG00000002538	-	53	49.664	ENSNGAG00000021073	Rrp1b	62	52.713	Nannospalax_galili
ENSSLDG00000002538	-	55	49.650	ENSNLEG00000001490	RRP1B	67	50.382	Nomascus_leucogenys
ENSSLDG00000002538	-	50	48.855	ENSODEG00000013177	RRP1B	64	48.462	Octodon_degus
ENSSLDG00000002538	-	51	80.851	ENSONIG00000004264	rrp1	62	73.950	Oreochromis_niloticus
ENSSLDG00000002538	-	54	48.201	ENSOANG00000006470	RRP1B	65	48.837	Ornithorhynchus_anatinus
ENSSLDG00000002538	-	66	67.347	ENSOMEG00000016910	-	57	69.681	Oryzias_melastigma
ENSSLDG00000002538	-	52	44.751	ENSOGAG00000009872	RRP1B	70	51.402	Otolemur_garnettii
ENSSLDG00000002538	-	52	49.650	ENSPPAG00000035319	RRP1B	62	50.382	Pan_paniscus
ENSSLDG00000002538	-	54	45.113	ENSPPRG00000010356	RRP1B	67	46.970	Panthera_pardus
ENSSLDG00000002538	-	55	48.951	ENSPTRG00000013958	RRP1B	65	49.618	Pan_troglodytes
ENSSLDG00000002538	-	55	48.252	ENSPANG00000011090	RRP1B	66	50.382	Papio_anubis
ENSSLDG00000002538	-	72	59.184	ENSPKIG00000003422	-	58	64.286	Paramormyrops_kingsleyae
ENSSLDG00000002538	-	54	53.804	ENSPSIG00000008152	RRP1B	60	53.784	Pelodiscus_sinensis
ENSSLDG00000002538	-	52	47.482	ENSPEMG00000022490	Rrp1b	67	49.219	Peromyscus_maniculatus_bairdii
ENSSLDG00000002538	-	54	48.663	ENSPCIG00000015513	RRP1B	63	53.333	Phascolarctos_cinereus
ENSSLDG00000002538	-	63	67.430	ENSPFOG00000007424	-	72	67.609	Poecilia_formosa
ENSSLDG00000002538	-	65	67.157	ENSPMEG00000007042	-	71	66.749	Poecilia_mexicana
ENSSLDG00000002538	-	63	66.422	ENSPREG00000015673	-	68	67.876	Poecilia_reticulata
ENSSLDG00000002538	-	55	49.650	ENSPPYG00000011470	RRP1B	65	50.382	Pongo_abelii
ENSSLDG00000002538	-	56	42.568	ENSPVAG00000001436	RRP1B	66	46.923	Pteropus_vampyrus
ENSSLDG00000002538	-	56	43.243	ENSRNOG00000001194	Rrp1b	68	43.796	Rattus_norvegicus
ENSSLDG00000002538	-	55	48.630	ENSRBIG00000041689	RRP1B	64	49.254	Rhinopithecus_bieti
ENSSLDG00000002538	-	55	48.630	ENSRROG00000031499	RRP1B	65	49.254	Rhinopithecus_roxellana
ENSSLDG00000002538	-	53	49.587	ENSSHAG00000017789	RRP1B	64	48.663	Sarcophilus_harrisii
ENSSLDG00000002538	-	54	55.634	ENSSFOG00015003932	-	63	59.524	Scleropages_formosus
ENSSLDG00000002538	-	100	64.791	ENSSMAG00000016847	-	91	78.238	Scophthalmus_maximus
ENSSLDG00000002538	-	100	97.338	ENSSDUG00000000551	-	100	97.338	Seriola_dumerili
ENSSLDG00000002538	-	53	49.862	ENSSPUG00000002834	RRP1B	64	48.737	Sphenodon_punctatus
ENSSLDG00000002538	-	100	56.780	ENSSPAG00000005370	-	100	58.176	Stegastes_partitus
ENSSLDG00000002538	-	51	54.839	ENSSSCG00000021698	RRP1B	67	54.839	Sus_scrofa
ENSSLDG00000002538	-	55	62.500	ENSTNIG00000005053	rrp1	70	70.845	Tetraodon_nigroviridis
ENSSLDG00000002538	-	56	43.846	ENSTTRG00000000723	RRP1B	67	43.846	Tursiops_truncatus
ENSSLDG00000002538	-	55	45.641	ENSUAMG00000026765	RRP1B	73	46.269	Ursus_americanus
ENSSLDG00000002538	-	51	45.736	ENSUMAG00000025510	RRP1B	89	45.736	Ursus_maritimus
ENSSLDG00000002538	-	50	45.802	ENSVVUG00000024509	RRP1B	65	48.837	Vulpes_vulpes
ENSSLDG00000002538	-	52	44.681	ENSXETG00000013683	rrp1b	71	44.562	Xenopus_tropicalis
ENSSLDG00000002538	-	66	66.262	ENSXMAG00000023123	-	61	70.408	Xiphophorus_maculatus