EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000002646 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 1679 bases
Position: chrPEQF01097923.1:315421-317099
Accession: 111651150
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000003383	MMR_HSR1	PF01926.23	6.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000003501	-	669	XM_023401114	ENSSLDP00000003383	222 (aa)	XP_023256882	UPI000BBEA8F9

Gene Model

Click here to download ENSSLDG00000002646's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000002646's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000002646	si:dkey-34d22.5	71	36.943	ENSSLDG00000000287	rab23	79	36.145
ENSSLDG00000002646	si:dkey-34d22.5	93	42.308	ENSSLDG00000005718	-	94	42.308
ENSSLDG00000002646	si:dkey-34d22.5	76	40.237	ENSSLDG00000012251	rab1ba	82	40.237
ENSSLDG00000002646	si:dkey-34d22.5	96	32.864	ENSSLDG00000011069	rab5aa	90	32.864
ENSSLDG00000002646	si:dkey-34d22.5	75	32.143	ENSSLDG00000013333	si:cabz01085950.1	82	32.143
ENSSLDG00000002646	si:dkey-34d22.5	69	32.026	ENSSLDG00000022168	kras	98	30.159
ENSSLDG00000002646	si:dkey-34d22.5	75	41.916	ENSSLDG00000022533	rab30	80	41.916
ENSSLDG00000002646	si:dkey-34d22.5	76	45.238	ENSSLDG00000021984	RAB15	77	45.238
ENSSLDG00000002646	si:dkey-34d22.5	85	38.660	ENSSLDG00000022004	rab33a	68	38.660
ENSSLDG00000002646	si:dkey-34d22.5	97	30.631	ENSSLDG00000005275	-	95	30.631
ENSSLDG00000002646	si:dkey-34d22.5	75	33.735	ENSSLDG00000015122	rras2	81	33.333
ENSSLDG00000002646	si:dkey-34d22.5	77	41.520	ENSSLDG00000015823	-	84	41.520
ENSSLDG00000002646	si:dkey-34d22.5	91	31.373	ENSSLDG00000024959	-	93	31.373
ENSSLDG00000002646	si:dkey-34d22.5	75	34.337	ENSSLDG00000020438	rab22a	84	34.337
ENSSLDG00000002646	si:dkey-34d22.5	77	41.279	ENSSLDG00000003631	si:dkey-16l2.16	80	41.279
ENSSLDG00000002646	si:dkey-34d22.5	70	30.769	ENSSLDG00000021833	si:ch73-116o1.2	79	30.952
ENSSLDG00000002646	si:dkey-34d22.5	68	36.000	ENSSLDG00000014812	rab34b	73	36.000
ENSSLDG00000002646	si:dkey-34d22.5	72	38.272	ENSSLDG00000011597	si:dkey-13a21.4	77	38.272
ENSSLDG00000002646	si:dkey-34d22.5	80	40.884	ENSSLDG00000011757	-	89	40.884
ENSSLDG00000002646	si:dkey-34d22.5	72	31.707	ENSSLDG00000015143	dnajc27	59	31.707
ENSSLDG00000002646	si:dkey-34d22.5	64	40.559	ENSSLDG00000008584	rab33ba	65	40.559
ENSSLDG00000002646	si:dkey-34d22.5	76	41.420	ENSSLDG00000018942	rab1ab	81	41.420
ENSSLDG00000002646	si:dkey-34d22.5	98	32.258	ENSSLDG00000010880	rab25a	96	32.258
ENSSLDG00000002646	si:dkey-34d22.5	87	39.086	ENSSLDG00000003264	rab6ba	90	39.086
ENSSLDG00000002646	si:dkey-34d22.5	75	42.515	ENSSLDG00000006014	rab18b	80	42.515
ENSSLDG00000002646	si:dkey-34d22.5	91	32.195	ENSSLDG00000012391	RAB7A	93	32.195
ENSSLDG00000002646	si:dkey-34d22.5	52	34.783	ENSSLDG00000014472	-	87	34.375
ENSSLDG00000002646	si:dkey-34d22.5	77	40.936	ENSSLDG00000022282	rab41	77	40.936
ENSSLDG00000002646	si:dkey-34d22.5	75	41.317	ENSSLDG00000006977	rab18a	80	41.317
ENSSLDG00000002646	si:dkey-34d22.5	81	32.804	ENSSLDG00000017771	rab5c	84	32.804
ENSSLDG00000002646	si:dkey-34d22.5	71	31.847	ENSSLDG00000018681	rheb	83	31.847
ENSSLDG00000002646	si:dkey-34d22.5	72	40.994	ENSSLDG00000022239	rab12	83	35.349
ENSSLDG00000002646	si:dkey-34d22.5	99	55.204	ENSSLDG00000020354	rab42a	100	55.204
ENSSLDG00000002646	si:dkey-34d22.5	86	55.263	ENSSLDG00000006360	RAB39B	88	55.263
ENSSLDG00000002646	si:dkey-34d22.5	97	30.698	ENSSLDG00000009464	rab36	78	30.698
ENSSLDG00000002646	si:dkey-34d22.5	74	44.848	ENSSLDG00000023317	rab15	76	44.848
ENSSLDG00000002646	si:dkey-34d22.5	85	56.085	ENSSLDG00000009068	-	88	56.085
ENSSLDG00000002646	si:dkey-34d22.5	77	40.936	ENSSLDG00000015289	-	78	40.936
ENSSLDG00000002646	si:dkey-34d22.5	78	32.184	ENSSLDG00000012627	hrasb	88	32.164
ENSSLDG00000002646	si:dkey-34d22.5	95	35.981	ENSSLDG00000012474	rab6bb	94	35.981
ENSSLDG00000002646	si:dkey-34d22.5	80	37.766	ENSSLDG00000009351	rab9b	91	37.766
ENSSLDG00000002646	si:dkey-34d22.5	98	39.269	ENSSLDG00000010503	rab14	96	39.269
ENSSLDG00000002646	si:dkey-34d22.5	97	33.333	ENSSLDG00000009438	rab11a	95	33.333
ENSSLDG00000002646	si:dkey-34d22.5	97	35.648	ENSSLDG00000022555	rab2a	99	35.648
ENSSLDG00000002646	si:dkey-34d22.5	74	40.828	ENSSLDG00000004352	-	77	40.828
ENSSLDG00000002646	si:dkey-34d22.5	76	33.333	ENSSLDG00000020918	RAB17	72	33.333
ENSSLDG00000002646	si:dkey-34d22.5	95	31.280	ENSSLDG00000009573	rab34a	85	31.280
ENSSLDG00000002646	si:dkey-34d22.5	92	31.905	ENSSLDG00000020676	rab11bb	94	31.905
ENSSLDG00000002646	si:dkey-34d22.5	67	42.000	ENSSLDG00000019214	zgc:101559	63	42.000
ENSSLDG00000002646	si:dkey-34d22.5	68	42.484	ENSSLDG00000008070	-	63	42.484
ENSSLDG00000002646	si:dkey-34d22.5	80	35.955	ENSSLDG00000012091	rab25b	84	35.955
ENSSLDG00000002646	si:dkey-34d22.5	74	42.604	ENSSLDG00000000773	rab9a	82	42.604
ENSSLDG00000002646	si:dkey-34d22.5	87	31.373	ENSSLDG00000003489	rasl11a	77	31.373
ENSSLDG00000002646	si:dkey-34d22.5	95	33.491	ENSSLDG00000009725	-	92	33.491
ENSSLDG00000002646	si:dkey-34d22.5	71	32.911	ENSSLDG00000025169	rhebl1	84	32.911
ENSSLDG00000002646	si:dkey-34d22.5	97	31.532	ENSSLDG00000005221	rab11ba	95	31.532
ENSSLDG00000002646	si:dkey-34d22.5	97	32.727	ENSSLDG00000012116	rab11al	95	32.727
ENSSLDG00000002646	si:dkey-34d22.5	79	41.714	ENSSLDG00000018024	zgc:171927	80	41.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000002646	si:dkey-34d22.5	100	87.387	ENSACIG00000016958	si:dkey-34d22.5	100	87.387	Amphilophus_citrinellus
ENSSLDG00000002646	si:dkey-34d22.5	100	91.441	ENSATEG00000010784	si:dkey-34d22.5	86	91.441	Anabas_testudineus
ENSSLDG00000002646	si:dkey-34d22.5	99	60.181	ENSCPBG00000011236	-	100	60.181	Chrysemys_picta_bellii
ENSSLDG00000002646	si:dkey-34d22.5	100	79.279	ENSCSEG00000019183	si:dkey-34d22.5	100	79.279	Cynoglossus_semilaevis
ENSSLDG00000002646	si:dkey-34d22.5	100	86.036	ENSCVAG00000017064	si:dkey-34d22.5	100	86.036	Cyprinodon_variegatus
ENSSLDG00000002646	si:dkey-34d22.5	83	50.000	ENSDARG00000100379	si:dkey-34d22.2	98	50.000	Danio_rerio
ENSSLDG00000002646	si:dkey-34d22.5	97	59.259	ENSFALG00000001373	-	98	59.259	Ficedula_albicollis
ENSSLDG00000002646	si:dkey-34d22.5	100	86.099	ENSFHEG00000012041	si:dkey-34d22.5	100	86.099	Fundulus_heteroclitus
ENSSLDG00000002646	si:dkey-34d22.5	97	57.870	ENSGALG00000000994	-	98	57.870	Gallus_gallus
ENSSLDG00000002646	si:dkey-34d22.5	100	87.387	ENSGAFG00000008183	si:dkey-34d22.5	100	87.387	Gambusia_affinis
ENSSLDG00000002646	si:dkey-34d22.5	94	59.615	ENSGAGG00000004918	-	100	59.615	Gopherus_agassizii
ENSSLDG00000002646	si:dkey-34d22.5	99	76.471	ENSHCOG00000015692	si:dkey-34d22.5	99	76.471	Hippocampus_comes
ENSSLDG00000002646	si:dkey-34d22.5	100	89.640	ENSKMAG00000012778	si:dkey-34d22.5	100	89.640	Kryptolebias_marmoratus
ENSSLDG00000002646	si:dkey-34d22.5	99	86.878	ENSLBEG00000002926	si:dkey-34d22.5	100	86.878	Labrus_bergylta
ENSSLDG00000002646	si:dkey-34d22.5	88	63.265	ENSLACG00000012674	si:dkey-34d22.5	92	63.265	Latimeria_chalumnae
ENSSLDG00000002646	si:dkey-34d22.5	98	71.889	ENSLOCG00000003467	si:dkey-34d22.5	98	71.889	Lepisosteus_oculatus
ENSSLDG00000002646	si:dkey-34d22.5	100	88.288	ENSMMOG00000006846	si:dkey-34d22.5	100	88.288	Mola_mola
ENSSLDG00000002646	si:dkey-34d22.5	100	86.036	ENSMALG00000013152	si:dkey-34d22.5	100	86.036	Monopterus_albus
ENSSLDG00000002646	si:dkey-34d22.5	99	90.455	ENSORLG00000014099	si:dkey-34d22.5	99	90.455	Oryzias_latipes
ENSSLDG00000002646	si:dkey-34d22.5	99	90.000	ENSORLG00020020277	si:dkey-34d22.5	99	90.000	Oryzias_latipes_hni
ENSSLDG00000002646	si:dkey-34d22.5	99	90.000	ENSORLG00015000142	si:dkey-34d22.5	99	90.000	Oryzias_latipes_hsok
ENSSLDG00000002646	si:dkey-34d22.5	91	94.059	ENSOMEG00000017958	si:dkey-34d22.5	99	90.909	Oryzias_melastigma
ENSSLDG00000002646	si:dkey-34d22.5	97	74.537	ENSPKIG00000021209	si:dkey-34d22.5	99	74.537	Paramormyrops_kingsleyae
ENSSLDG00000002646	si:dkey-34d22.5	91	63.184	ENSPSIG00000006606	-	99	63.184	Pelodiscus_sinensis
ENSSLDG00000002646	si:dkey-34d22.5	99	85.909	ENSPMGG00000001298	-	99	85.973	Periophthalmus_magnuspinnatus
ENSSLDG00000002646	si:dkey-34d22.5	92	60.488	ENSPCIG00000022399	-	91	60.488	Phascolarctos_cinereus
ENSSLDG00000002646	si:dkey-34d22.5	100	87.838	ENSPFOG00000014499	si:dkey-34d22.5	100	87.838	Poecilia_formosa
ENSSLDG00000002646	si:dkey-34d22.5	100	87.838	ENSPLAG00000007773	si:dkey-34d22.5	100	87.838	Poecilia_latipinna
ENSSLDG00000002646	si:dkey-34d22.5	100	87.838	ENSPMEG00000012932	si:dkey-34d22.5	100	87.838	Poecilia_mexicana
ENSSLDG00000002646	si:dkey-34d22.5	89	60.914	ENSSHAG00000008520	-	88	60.914	Sarcophilus_harrisii
ENSSLDG00000002646	si:dkey-34d22.5	99	69.863	ENSSFOG00015012088	rab42	97	69.863	Scleropages_formosus
ENSSLDG00000002646	si:dkey-34d22.5	99	92.760	ENSSPAG00000012955	si:dkey-34d22.5	99	92.760	Stegastes_partitus
ENSSLDG00000002646	si:dkey-34d22.5	79	53.714	ENSXETG00000020622	rab39a	84	53.714	Xenopus_tropicalis
ENSSLDG00000002646	si:dkey-34d22.5	100	86.937	ENSXCOG00000008410	si:dkey-34d22.5	100	86.937	Xiphophorus_couchianus
ENSSLDG00000002646	si:dkey-34d22.5	100	86.937	ENSXMAG00000029317	si:dkey-34d22.5	100	86.937	Xiphophorus_maculatus