EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSLDG00000003109 (Gene tree)
Gene ID
-
Gene Symbol
rbm47
Alias
si:ch211-241e15.2|wu:fj94a03
Full Name
RNA binding motif protein 47
Gene Type
protein_coding
Species
Seriola_lalandi_dorsalis
Status
putative
Strand
Plus strand
Length
33579 bases
Position
chrPEQF01099061.1:807877-841455
Accession
111664052
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSLDP00000003976RRM_5PF13893.63.1e-0611
ENSSLDP00000004052RRM_5PF13893.64e-0611
ENSSLDP00000003963RRM_5PF13893.64.5e-0611
ENSSLDP00000003951RRM_5PF13893.64.6e-0611
ENSSLDP00000003971RRM_5PF13893.64.6e-0611
ENSSLDP00000003995RRM_5PF13893.64.6e-0611
ENSSLDP00000004015RRM_5PF13893.64.6e-0611
ENSSLDP00000003976RRM_1PF00076.225.6e-3913
ENSSLDP00000003976RRM_1PF00076.225.6e-3923
ENSSLDP00000003976RRM_1PF00076.225.6e-3933
ENSSLDP00000004052RRM_1PF00076.227.8e-3913
ENSSLDP00000004052RRM_1PF00076.227.8e-3923
ENSSLDP00000004052RRM_1PF00076.227.8e-3933
ENSSLDP00000003963RRM_1PF00076.229.3e-3913
ENSSLDP00000003963RRM_1PF00076.229.3e-3923
ENSSLDP00000003963RRM_1PF00076.229.3e-3933
ENSSLDP00000003951RRM_1PF00076.221e-3813
ENSSLDP00000003951RRM_1PF00076.221e-3823
ENSSLDP00000003951RRM_1PF00076.221e-3833
ENSSLDP00000003971RRM_1PF00076.221e-3813
ENSSLDP00000003971RRM_1PF00076.221e-3823
ENSSLDP00000003971RRM_1PF00076.221e-3833
ENSSLDP00000003995RRM_1PF00076.221e-3813
ENSSLDP00000003995RRM_1PF00076.221e-3823
ENSSLDP00000003995RRM_1PF00076.221e-3833
ENSSLDP00000004015RRM_1PF00076.221e-3813
ENSSLDP00000004015RRM_1PF00076.221e-3823
ENSSLDP00000004015RRM_1PF00076.221e-3833
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSLDT00000004106-6561XM_023418506ENSSLDP00000003971619 (aa)XP_023274274UPI000C6F9BA8
ENSSLDT00000004111-6327XM_023418514ENSSLDP00000003976541 (aa)XP_023274282UPI000C6FAF63
ENSSLDT00000004086-6728XM_023418507ENSSLDP00000003951619 (aa)XP_023274275UPI000C6F9BA8
ENSSLDT00000004098-6704XM_023418512ENSSLDP00000003963611 (aa)XP_023274280UPI000C6F55B5
ENSSLDT00000004150-6308XM_023418510ENSSLDP00000004015619 (aa)XP_023274278UPI000C6F9BA8
ENSSLDT00000004131-6416XM_023418505ENSSLDP00000003995619 (aa)XP_023274273UPI000C6F9BA8
ENSSLDT00000004185-1764-ENSSLDP00000004052587 (aa)--
Gene Model
Click here to download ENSSLDG00000003109's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000003109's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSLDG00000003109rbm475551.987ENSSLDG00000021848syncrip6945.093
ENSSLDG00000003109rbm475553.311ENSSLDG00000003502syncripl7446.798
ENSSLDG00000003109rbm477853.254ENSSLDG00000004290a1cf8853.333
ENSSLDG00000003109rbm475654.248ENSSLDG00000013790hnrnpr5152.795
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSLDG00000003109rbm4710081.383ENSG00000163694RBM4710086.175Homo_sapiens
ENSSLDG00000003109rbm4710095.953ENSAPOG00000011062rbm4710095.953Acanthochromis_polyacanthus
ENSSLDG00000003109rbm479284.463ENSAMEG00000009672RBM4710077.870Ailuropoda_melanoleuca
ENSSLDG00000003109rbm4710094.907ENSACIG00000011531rbm4710094.907Amphilophus_citrinellus
ENSSLDG00000003109rbm4710097.119ENSAOCG00000022245rbm4710097.119Amphiprion_ocellaris
ENSSLDG00000003109rbm4710097.284ENSAPEG00000018304rbm4710097.284Amphiprion_percula
ENSSLDG00000003109rbm4710094.830ENSATEG00000018400rbm4710094.830Anabas_testudineus
ENSSLDG00000003109rbm4710081.658ENSAPLG00000013974RBM4710077.592Anas_platyrhynchos
ENSSLDG00000003109rbm4710078.734ENSACAG00000011833RBM4710077.741Anolis_carolinensis
ENSSLDG00000003109rbm4710083.245ENSANAG00000029440RBM4710080.556Aotus_nancymaae
ENSSLDG00000003109rbm4710093.639ENSACLG00000016902rbm4710093.639Astatotilapia_calliptera
ENSSLDG00000003109rbm4710082.623ENSAMXG00000021794rbm4710085.642Astyanax_mexicanus
ENSSLDG00000003109rbm4710078.788ENSBTAG00000002356RBM4710079.195Bos_taurus
ENSSLDG00000003109rbm479785.434ENSCJAG00000019385RBM4710080.808Callithrix_jacchus
ENSSLDG00000003109rbm479284.986ENSCAFG00000015898RBM4710077.759Canis_familiaris
ENSSLDG00000003109rbm478380.244ENSCAFG00020010558RBM479482.493Canis_lupus_dingo
ENSSLDG00000003109rbm4710078.788ENSCHIG00000026214RBM4710079.195Capra_hircus
ENSSLDG00000003109rbm478387.444ENSTSYG00000033612RBM479386.283Carlito_syrichta
ENSSLDG00000003109rbm4710072.437ENSCAPG00000008426RBM4710072.437Cavia_aperea
ENSSLDG00000003109rbm4710082.228ENSCPOG00000014100RBM4710078.020Cavia_porcellus
ENSSLDG00000003109rbm479955.966ENSCCAG00000024397-9956.303Cebus_capucinus
ENSSLDG00000003109rbm4710084.309ENSCCAG00000030129-10080.303Cebus_capucinus
ENSSLDG00000003109rbm4710081.383ENSCATG00000042064RBM4710080.808Cercocebus_atys
ENSSLDG00000003109rbm4710082.228ENSCLAG00000001684RBM4710082.911Chinchilla_lanigera
ENSSLDG00000003109rbm479284.986ENSCSAG00000017060RBM4710078.833Chlorocebus_sabaeus
ENSSLDG00000003109rbm478974.775ENSCHOG00000011731RBM478877.354Choloepus_hoffmanni
ENSSLDG00000003109rbm4710082.576ENSCPBG00000013831RBM4710080.667Chrysemys_picta_bellii
ENSSLDG00000003109rbm4710082.275ENSCANG00000019997RBM4710080.556Colobus_angolensis_palliatus
ENSSLDG00000003109rbm4710082.447ENSCGRG00001000623-10077.205Cricetulus_griseus_chok1gshd
ENSSLDG00000003109rbm4710077.454ENSCGRG00001020102-10079.045Cricetulus_griseus_chok1gshd
ENSSLDG00000003109rbm4710077.188ENSCGRG00000014760-10078.780Cricetulus_griseus_crigri
ENSSLDG00000003109rbm4710076.675ENSCGRG00000007762-10082.278Cricetulus_griseus_crigri
ENSSLDG00000003109rbm4710090.847ENSCSEG00000004545rbm4710091.695Cynoglossus_semilaevis
ENSSLDG00000003109rbm4710092.621ENSCVAG00000020144rbm4710092.621Cyprinodon_variegatus
ENSSLDG00000003109rbm4710085.823ENSDARG00000061985rbm4710086.329Danio_rerio
ENSSLDG00000003109rbm479286.479ENSDNOG00000046854RBM4710079.630Dasypus_novemcinctus
ENSSLDG00000003109rbm4710079.198ENSDORG00000010144Rbm4710077.741Dipodomys_ordii
ENSSLDG00000003109rbm4710076.795ENSETEG00000009194RBM4710078.798Echinops_telfairi
ENSSLDG00000003109rbm479957.903ENSEBUG00000011912rbm479958.070Eptatretus_burgeri
ENSSLDG00000003109rbm479285.634ENSEASG00005008443RBM4710079.362Equus_asinus_asinus
ENSSLDG00000003109rbm479285.634ENSECAG00000004400RBM4710079.362Equus_caballus
ENSSLDG00000003109rbm477089.474ENSEEUG00000001194RBM477585.714Erinaceus_europaeus
ENSSLDG00000003109rbm4710088.471ENSELUG00000006148rbm4710088.471Esox_lucius
ENSSLDG00000003109rbm4710076.936ENSFCAG00000012399RBM4710079.461Felis_catus
ENSSLDG00000003109rbm4710081.566ENSFALG00000002861RBM4710079.833Ficedula_albicollis
ENSSLDG00000003109rbm4710078.987ENSFDAG00000016326RBM4710078.987Fukomys_damarensis
ENSSLDG00000003109rbm4710090.971ENSFHEG00000007938rbm4710090.801Fundulus_heteroclitus
ENSSLDG00000003109rbm4710087.121ENSGMOG00000014802rbm4710083.226Gadus_morhua
ENSSLDG00000003109rbm477382.576ENSGALG00000014267RBM479985.904Gallus_gallus
ENSSLDG00000003109rbm477387.786ENSGAFG00000020571rbm479893.225Gambusia_affinis
ENSSLDG00000003109rbm4710091.858ENSGACG00000016223rbm4710091.858Gasterosteus_aculeatus
ENSSLDG00000003109rbm4710082.576ENSGAGG00000020051RBM4710080.801Gopherus_agassizii
ENSSLDG00000003109rbm4710081.383ENSGGOG00000001367RBM4710080.808Gorilla_gorilla
ENSSLDG00000003109rbm4710093.639ENSHBUG00000003520rbm4710093.639Haplochromis_burtoni
ENSSLDG00000003109rbm4710060.367ENSHGLG00000016914RBM4710081.646Heterocephalus_glaber_female
ENSSLDG00000003109rbm4710075.949ENSHGLG00100003071-10069.514Heterocephalus_glaber_male
ENSSLDG00000003109rbm4710082.933ENSHGLG00100014028-10081.646Heterocephalus_glaber_male
ENSSLDG00000003109rbm479993.401ENSHCOG00000002074rbm479993.893Hippocampus_comes
ENSSLDG00000003109rbm4710086.294ENSIPUG00000004743rbm4710085.932Ictalurus_punctatus
ENSSLDG00000003109rbm479383.708ENSSTOG00000004727RBM4710080.506Ictidomys_tridecemlineatus
ENSSLDG00000003109rbm479286.158ENSJJAG00000013823Rbm4710077.205Jaculus_jaculus
ENSSLDG00000003109rbm4710091.779ENSKMAG00000000084rbm4710092.386Kryptolebias_marmoratus
ENSSLDG00000003109rbm4710094.247ENSLBEG00000008436rbm4710094.247Labrus_bergylta
ENSSLDG00000003109rbm479288.202ENSLACG00000007196RBM4710079.899Latimeria_chalumnae
ENSSLDG00000003109rbm4710083.502ENSLOCG00000012966rbm479584.370Lepisosteus_oculatus
ENSSLDG00000003109rbm4710078.734ENSLAFG00000011998RBM4710079.264Loxodonta_africana
ENSSLDG00000003109rbm4710081.383ENSMFAG00000037967RBM4710080.808Macaca_fascicularis
ENSSLDG00000003109rbm479284.986ENSMMUG00000012036RBM4710084.456Macaca_mulatta
ENSSLDG00000003109rbm4710081.117ENSMNEG00000040774RBM4710080.808Macaca_nemestrina
ENSSLDG00000003109rbm4710083.492ENSMLEG00000041432RBM4710086.032Mandrillus_leucophaeus
ENSSLDG00000003109rbm4710094.911ENSMAMG00000019143rbm4710094.911Mastacembelus_armatus
ENSSLDG00000003109rbm4710093.639ENSMZEG00005023659rbm4710092.949Maylandia_zebra
ENSSLDG00000003109rbm4710082.071ENSMGAG00000012226RBM4710079.900Meleagris_gallopavo
ENSSLDG00000003109rbm4710082.493ENSMAUG00000006493Rbm4710082.911Mesocricetus_auratus
ENSSLDG00000003109rbm4710078.933ENSMICG00000026417RBM4710082.353Microcebus_murinus
ENSSLDG00000003109rbm4710082.181ENSMOCG00000021170Rbm4710082.278Microtus_ochrogaster
ENSSLDG00000003109rbm4710093.453ENSMMOG00000007260rbm4710093.453Mola_mola
ENSSLDG00000003109rbm475678.710ENSMODG00000015426-9778.710Monodelphis_domestica
ENSSLDG00000003109rbm4710074.940ENSMODG00000020561-10073.986Monodelphis_domestica
ENSSLDG00000003109rbm4710081.519ENSMODG00000007003RBM4710078.798Monodelphis_domestica
ENSSLDG00000003109rbm4710095.571ENSMALG00000005167rbm4710095.400Monopterus_albus
ENSSLDG00000003109rbm4710082.713MGP_CAROLIEiJ_G0027258Rbm4710084.043Mus_caroli
ENSSLDG00000003109rbm4710082.713ENSMUSG00000070780Rbm4710084.043Mus_musculus
ENSSLDG00000003109rbm4710082.447MGP_PahariEiJ_G0017040Rbm4710083.777Mus_pahari
ENSSLDG00000003109rbm4710082.713MGP_SPRETEiJ_G0028253Rbm4710084.043Mus_spretus
ENSSLDG00000003109rbm479285.311ENSMPUG00000006177RBM479478.094Mustela_putorius_furo
ENSSLDG00000003109rbm4710080.605ENSMLUG00000000889RBM4710078.523Myotis_lucifugus
ENSSLDG00000003109rbm4710079.798ENSNGAG00000003325Rbm4710077.500Nannospalax_galili
ENSSLDG00000003109rbm4710093.639ENSNBRG00000015092rbm4710093.031Neolamprologus_brichardi
ENSSLDG00000003109rbm4710081.383ENSNLEG00000017151RBM4710084.840Nomascus_leucogenys
ENSSLDG00000003109rbm477280.660ENSMEUG00000009516-9980.660Notamacropus_eugenii
ENSSLDG00000003109rbm477885.477ENSOPRG00000016507-7585.477Ochotona_princeps
ENSSLDG00000003109rbm4710076.639ENSODEG00000004873RBM4710078.319Octodon_degus
ENSSLDG00000003109rbm4710093.384ENSONIG00000009061rbm4710092.985Oreochromis_niloticus
ENSSLDG00000003109rbm4710080.759ENSOANG00000008978RBM4710079.264Ornithorhynchus_anatinus
ENSSLDG00000003109rbm4710078.734ENSOCUG00000012034RBM4710078.428Oryctolagus_cuniculus
ENSSLDG00000003109rbm4710092.881ENSORLG00000005847rbm4710092.712Oryzias_latipes
ENSSLDG00000003109rbm4710093.051ENSORLG00020005154rbm4710092.881Oryzias_latipes_hni
ENSSLDG00000003109rbm4710092.542ENSORLG00015000066rbm4710092.542Oryzias_latipes_hsok
ENSSLDG00000003109rbm4710092.360ENSOMEG00000010730rbm4710092.190Oryzias_melastigma
ENSSLDG00000003109rbm479285.311ENSOGAG00000029367-10078.261Otolemur_garnettii
ENSSLDG00000003109rbm479279.944ENSOGAG00000025193-10072.727Otolemur_garnettii
ENSSLDG00000003109rbm4710069.682ENSOARG00000012711RBM4710071.309Ovis_aries
ENSSLDG00000003109rbm4710077.027ENSPPAG00000029763RBM479584.840Pan_paniscus
ENSSLDG00000003109rbm4710081.266ENSPPRG00000012873RBM479984.000Panthera_pardus
ENSSLDG00000003109rbm478676.587ENSPTIG00000017046RBM4710077.183Panthera_tigris_altaica
ENSSLDG00000003109rbm4710081.383ENSPTRG00000016006RBM4710080.808Pan_troglodytes
ENSSLDG00000003109rbm4710081.383ENSPANG00000005980RBM4710080.808Papio_anubis
ENSSLDG00000003109rbm479289.296ENSPKIG00000005037rbm4710079.900Paramormyrops_kingsleyae
ENSSLDG00000003109rbm4710084.416ENSPKIG00000013431RBM479884.416Paramormyrops_kingsleyae
ENSSLDG00000003109rbm478981.509ENSPSIG00000017516RBM479781.509Pelodiscus_sinensis
ENSSLDG00000003109rbm4710092.687ENSPMGG00000018540rbm4710092.687Periophthalmus_magnuspinnatus
ENSSLDG00000003109rbm4710082.181ENSPEMG00000011088Rbm4710079.545Peromyscus_maniculatus_bairdii
ENSSLDG00000003109rbm4710091.349ENSPFOG00000007997rbm4710089.448Poecilia_formosa
ENSSLDG00000003109rbm4710091.094ENSPLAG00000002072rbm4710092.683Poecilia_latipinna
ENSSLDG00000003109rbm4710091.349ENSPMEG00000017492rbm4710091.349Poecilia_mexicana
ENSSLDG00000003109rbm4710091.349ENSPREG00000008456rbm4710092.954Poecilia_reticulata
ENSSLDG00000003109rbm479967.568ENSPPYG00000014688RBM4710068.687Pongo_abelii
ENSSLDG00000003109rbm478977.363ENSPCAG00000011879RBM478184.712Procavia_capensis
ENSSLDG00000003109rbm4710081.117ENSPCOG00000023451RBM4710083.422Propithecus_coquereli
ENSSLDG00000003109rbm479283.989ENSPVAG00000003812RBM4710077.963Pteropus_vampyrus
ENSSLDG00000003109rbm4710093.639ENSPNYG00000022868rbm4710092.569Pundamilia_nyererei
ENSSLDG00000003109rbm4710086.582ENSPNAG00000007940rbm4710087.089Pygocentrus_nattereri
ENSSLDG00000003109rbm4710078.392ENSRNOG00000002408Rbm4710078.261Rattus_norvegicus
ENSSLDG00000003109rbm4710082.275ENSRBIG00000039601RBM4710080.556Rhinopithecus_bieti
ENSSLDG00000003109rbm4710082.275ENSRROG00000044696RBM4710080.556Rhinopithecus_roxellana
ENSSLDG00000003109rbm4710075.589ENSSBOG00000028475RBM4710081.687Saimiri_boliviensis_boliviensis
ENSSLDG00000003109rbm4710081.266ENSSHAG00000017576RBM4710079.328Sarcophilus_harrisii
ENSSLDG00000003109rbm4710079.305ENSSFOG00015012445rbm4710084.557Scleropages_formosus
ENSSLDG00000003109rbm479979.865ENSSFOG00015024101RBM479979.966Scleropages_formosus
ENSSLDG00000003109rbm4710093.538ENSSMAG00000009744rbm4710093.516Scophthalmus_maximus
ENSSLDG00000003109rbm4710099.354ENSSDUG00000022684rbm4710099.354Seriola_dumerili
ENSSLDG00000003109rbm478579.955ENSSARG00000001735RBM477582.405Sorex_araneus
ENSSLDG00000003109rbm4710084.211ENSSPUG00000007515RBM4710084.211Sphenodon_punctatus
ENSSLDG00000003109rbm4710098.129ENSSPAG00000001257rbm4710098.129Stegastes_partitus
ENSSLDG00000003109rbm479384.874ENSSSCG00000008796RBM4710078.859Sus_scrofa
ENSSLDG00000003109rbm4710081.818ENSTGUG00000008705RBM4710079.899Taeniopygia_guttata
ENSSLDG00000003109rbm4710092.334ENSTRUG00000014050rbm4710092.334Takifugu_rubripes
ENSSLDG00000003109rbm4710091.817ENSTNIG00000006127rbm4710091.817Tetraodon_nigroviridis
ENSSLDG00000003109rbm478083.569ENSTBEG00000001607RBM477682.133Tupaia_belangeri
ENSSLDG00000003109rbm4710077.778ENSTTRG00000002839RBM4710078.956Tursiops_truncatus
ENSSLDG00000003109rbm4710076.756ENSUAMG00000021346RBM4710078.428Ursus_americanus
ENSSLDG00000003109rbm475285.600ENSVPAG00000000641-5681.379Vicugna_pacos
ENSSLDG00000003109rbm479285.552ENSVVUG00000014774RBM4710077.889Vulpes_vulpes
ENSSLDG00000003109rbm4710081.203ENSXETG00000012802rbm4710078.965Xenopus_tropicalis
ENSSLDG00000003109rbm4710086.740ENSXCOG00000000780rbm4710093.225Xiphophorus_couchianus
ENSSLDG00000003109rbm4710091.771ENSXMAG00000009874rbm4710091.771Xiphophorus_maculatus

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