EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000003130 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 2710 bases
Position: chrPEQF01099586.1:3353840-3356549
Accession: 111648320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000003939	Smg4_UPF3	PF03467.15	1e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000004071	-	1545	XM_023398169	ENSSLDP00000003939	461 (aa)	XP_023253937	UPI000C6FAADD

Gene Model

Click here to download ENSSLDG00000003130's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000003130's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000003130	upf3b	97	56.156	ENSG00000125351	UPF3B	96	67.143	Homo_sapiens
ENSSLDG00000003130	upf3b	100	88.069	ENSAPOG00000012775	upf3b	100	87.202	Acanthochromis_polyacanthus
ENSSLDG00000003130	upf3b	97	52.484	ENSAMEG00000000163	UPF3B	96	54.329	Ailuropoda_melanoleuca
ENSSLDG00000003130	upf3b	100	82.151	ENSACIG00000013582	upf3b	100	86.452	Amphilophus_citrinellus
ENSSLDG00000003130	upf3b	100	86.551	ENSAOCG00000000706	upf3b	100	86.117	Amphiprion_ocellaris
ENSSLDG00000003130	upf3b	100	86.985	ENSAPEG00000005545	upf3b	100	86.551	Amphiprion_percula
ENSSLDG00000003130	upf3b	100	88.817	ENSATEG00000018742	upf3b	100	87.957	Anabas_testudineus
ENSSLDG00000003130	upf3b	98	59.149	ENSACAG00000003625	UPF3B	98	57.996	Anolis_carolinensis
ENSSLDG00000003130	upf3b	89	51.079	ENSACAG00000001540	UPF3A	96	49.640	Anolis_carolinensis
ENSSLDG00000003130	upf3b	97	52.688	ENSANAG00000021894	-	97	66.986	Aotus_nancymaae
ENSSLDG00000003130	upf3b	97	52.665	ENSANAG00000025598	-	93	50.667	Aotus_nancymaae
ENSSLDG00000003130	upf3b	100	86.985	ENSACLG00000001649	upf3b	100	87.419	Astatotilapia_calliptera
ENSSLDG00000003130	upf3b	66	83.784	ENSAMXG00000000199	upf3b	98	83.784	Astyanax_mexicanus
ENSSLDG00000003130	upf3b	56	67.153	ENSBTAG00000035615	UPF3B	68	66.825	Bos_taurus
ENSSLDG00000003130	upf3b	97	52.052	ENSCJAG00000004975	UPF3B	97	66.507	Callithrix_jacchus
ENSSLDG00000003130	upf3b	97	54.644	ENSCAFG00000018426	UPF3B	98	54.762	Canis_familiaris
ENSSLDG00000003130	upf3b	97	52.916	ENSCAFG00020004074	UPF3B	89	61.017	Canis_lupus_dingo
ENSSLDG00000003130	upf3b	92	39.671	ENSCHIG00000011454	-	86	37.288	Capra_hircus
ENSSLDG00000003130	upf3b	97	51.883	ENSCHIG00000000247	-	96	53.445	Capra_hircus
ENSSLDG00000003130	upf3b	97	51.674	ENSCHIG00000018011	-	98	53.236	Capra_hircus
ENSSLDG00000003130	upf3b	97	54.409	ENSTSYG00000014690	UPF3B	96	61.860	Carlito_syrichta
ENSSLDG00000003130	upf3b	93	38.274	ENSCCAG00000029813	-	51	61.039	Cebus_capucinus
ENSSLDG00000003130	upf3b	97	56.156	ENSCATG00000017506	UPF3B	97	66.986	Cercocebus_atys
ENSSLDG00000003130	upf3b	68	61.747	ENSCLAG00000003260	UPF3B	96	55.195	Chinchilla_lanigera
ENSSLDG00000003130	upf3b	97	50.840	ENSCSAG00000018348	UPF3B	96	53.053	Chlorocebus_sabaeus
ENSSLDG00000003130	upf3b	94	58.784	ENSCPBG00000020685	UPF3B	93	57.466	Chrysemys_picta_bellii
ENSSLDG00000003130	upf3b	56	66.912	ENSCANG00000029220	UPF3B	66	66.825	Colobus_angolensis_palliatus
ENSSLDG00000003130	upf3b	68	56.325	ENSCGRG00001013643	-	90	53.134	Cricetulus_griseus_chok1gshd
ENSSLDG00000003130	upf3b	94	52.954	ENSCGRG00001006858	-	94	53.319	Cricetulus_griseus_chok1gshd
ENSSLDG00000003130	upf3b	86	56.931	ENSCGRG00000007627	Upf3b	93	56.642	Cricetulus_griseus_crigri
ENSSLDG00000003130	upf3b	99	76.875	ENSCSEG00000002046	upf3b	99	77.083	Cynoglossus_semilaevis
ENSSLDG00000003130	upf3b	100	81.169	ENSCVAG00000005030	upf3b	100	81.385	Cyprinodon_variegatus
ENSSLDG00000003130	upf3b	92	51.147	ENSDARG00000069297	upf3a	85	49.043	Danio_rerio
ENSSLDG00000003130	upf3b	94	74.541	ENSDARG00000000489	upf3b	99	69.957	Danio_rerio
ENSSLDG00000003130	upf3b	97	51.471	ENSDNOG00000008665	UPF3B	96	53.684	Dasypus_novemcinctus
ENSSLDG00000003130	upf3b	97	54.506	ENSDORG00000006077	Upf3b	93	54.889	Dipodomys_ordii
ENSSLDG00000003130	upf3b	97	50.756	ENSEASG00005012919	UPF3B	96	53.463	Equus_asinus_asinus
ENSSLDG00000003130	upf3b	97	50.756	ENSECAG00000016947	UPF3B	96	53.463	Equus_caballus
ENSSLDG00000003130	upf3b	99	69.421	ENSELUG00000020389	upf3b	100	71.959	Esox_lucius
ENSSLDG00000003130	upf3b	88	51.816	ENSELUG00000011050	upf3a	50	65.272	Esox_lucius
ENSSLDG00000003130	upf3b	97	55.224	ENSFCAG00000004388	UPF3B	93	55.778	Felis_catus
ENSSLDG00000003130	upf3b	97	56.795	ENSFALG00000001569	UPF3B	96	55.375	Ficedula_albicollis
ENSSLDG00000003130	upf3b	97	56.371	ENSFDAG00000018869	UPF3B	96	54.978	Fukomys_damarensis
ENSSLDG00000003130	upf3b	100	79.741	ENSFHEG00000017895	upf3b	100	80.388	Fundulus_heteroclitus
ENSSLDG00000003130	upf3b	100	70.613	ENSGMOG00000001621	upf3b	100	71.459	Gadus_morhua
ENSSLDG00000003130	upf3b	99	56.875	ENSGALG00000008618	UPF3B	99	56.184	Gallus_gallus
ENSSLDG00000003130	upf3b	100	78.139	ENSGAFG00000000829	upf3b	100	79.654	Gambusia_affinis
ENSSLDG00000003130	upf3b	100	78.710	ENSGACG00000017435	upf3b	94	89.062	Gasterosteus_aculeatus
ENSSLDG00000003130	upf3b	94	62.247	ENSGAGG00000001219	UPF3B	94	61.538	Gopherus_agassizii
ENSSLDG00000003130	upf3b	97	56.156	ENSGGOG00000023995	UPF3B	96	54.545	Gorilla_gorilla
ENSSLDG00000003130	upf3b	87	38.025	ENSGGOG00000043074	-	81	40.342	Gorilla_gorilla
ENSSLDG00000003130	upf3b	93	37.327	ENSGGOG00000041219	-	86	40.541	Gorilla_gorilla
ENSSLDG00000003130	upf3b	100	86.551	ENSHBUG00000017393	upf3b	100	86.985	Haplochromis_burtoni
ENSSLDG00000003130	upf3b	69	55.655	ENSHGLG00000011189	-	83	53.631	Heterocephalus_glaber_female
ENSSLDG00000003130	upf3b	97	52.052	ENSHGLG00000019582	-	96	54.329	Heterocephalus_glaber_female
ENSSLDG00000003130	upf3b	97	52.052	ENSHGLG00100002042	-	96	52.268	Heterocephalus_glaber_male
ENSSLDG00000003130	upf3b	69	55.655	ENSHGLG00100001889	-	55	67.100	Heterocephalus_glaber_male
ENSSLDG00000003130	upf3b	100	75.053	ENSHCOG00000017004	upf3b	100	74.840	Hippocampus_comes
ENSSLDG00000003130	upf3b	100	71.520	ENSIPUG00000019249	upf3b	100	70.236	Ictalurus_punctatus
ENSSLDG00000003130	upf3b	97	56.371	ENSSTOG00000001101	UPF3B	96	54.762	Ictidomys_tridecemlineatus
ENSSLDG00000003130	upf3b	68	59.639	ENSJJAG00000000053	Upf3b	93	53.778	Jaculus_jaculus
ENSSLDG00000003130	upf3b	100	82.863	ENSKMAG00000020300	upf3b	100	83.514	Kryptolebias_marmoratus
ENSSLDG00000003130	upf3b	60	88.809	ENSLBEG00000028689	upf3b	59	89.179	Labrus_bergylta
ENSSLDG00000003130	upf3b	100	62.076	ENSLACG00000008691	UPF3B	100	62.712	Latimeria_chalumnae
ENSSLDG00000003130	upf3b	100	65.086	ENSLOCG00000015238	upf3b	96	68.254	Lepisosteus_oculatus
ENSSLDG00000003130	upf3b	93	53.196	ENSLOCG00000002665	upf3a	88	51.395	Lepisosteus_oculatus
ENSSLDG00000003130	upf3b	97	52.575	ENSLAFG00000001267	UPF3B	96	54.978	Loxodonta_africana
ENSSLDG00000003130	upf3b	97	52.052	ENSMFAG00000045414	UPF3B	97	66.986	Macaca_fascicularis
ENSSLDG00000003130	upf3b	97	52.052	ENSMMUG00000020222	UPF3B	97	66.986	Macaca_mulatta
ENSSLDG00000003130	upf3b	97	52.052	ENSMNEG00000039794	UPF3B	97	66.986	Macaca_nemestrina
ENSSLDG00000003130	upf3b	97	56.156	ENSMLEG00000010999	UPF3B	97	66.986	Mandrillus_leucophaeus
ENSSLDG00000003130	upf3b	100	86.985	ENSMZEG00005007871	upf3b	100	87.419	Maylandia_zebra
ENSSLDG00000003130	upf3b	85	49.752	ENSMGAG00000014837	UPF3A	95	47.264	Meleagris_gallopavo
ENSSLDG00000003130	upf3b	83	58.612	ENSMGAG00000007728	UPF3B	98	57.069	Meleagris_gallopavo
ENSSLDG00000003130	upf3b	94	52.097	ENSMAUG00000008705	Upf3b	83	55.611	Mesocricetus_auratus
ENSSLDG00000003130	upf3b	56	67.153	ENSMICG00000001743	UPF3B	66	66.825	Microcebus_murinus
ENSSLDG00000003130	upf3b	99	51.335	ENSMOCG00000017893	Upf3b	98	50.412	Microtus_ochrogaster
ENSSLDG00000003130	upf3b	100	82.251	ENSMMOG00000004183	upf3b	100	80.952	Mola_mola
ENSSLDG00000003130	upf3b	90	60.714	ENSMODG00000010232	UPF3B	93	60.500	Monodelphis_domestica
ENSSLDG00000003130	upf3b	91	51.643	ENSMODG00000003159	UPF3A	92	50.839	Monodelphis_domestica
ENSSLDG00000003130	upf3b	100	84.301	ENSMALG00000008042	upf3b	100	84.516	Monopterus_albus
ENSSLDG00000003130	upf3b	94	53.642	MGP_CAROLIEiJ_G0032999	Upf3b	83	56.359	Mus_caroli
ENSSLDG00000003130	upf3b	94	53.744	ENSMUSG00000036572	Upf3b	93	53.556	Mus_musculus
ENSSLDG00000003130	upf3b	94	53.642	MGP_PahariEiJ_G0031543	Upf3b	83	56.359	Mus_pahari
ENSSLDG00000003130	upf3b	94	53.744	MGP_SPRETEiJ_G0034152	Upf3b	93	53.556	Mus_spretus
ENSSLDG00000003130	upf3b	71	60.458	ENSMPUG00000001531	UPF3B	98	54.545	Mustela_putorius_furo
ENSSLDG00000003130	upf3b	97	57.204	ENSMLUG00000010821	UPF3B	83	58.853	Myotis_lucifugus
ENSSLDG00000003130	upf3b	87	46.683	ENSMLUG00000015905	UPF3A	93	49.029	Myotis_lucifugus
ENSSLDG00000003130	upf3b	94	55.188	ENSNGAG00000008231	Upf3b	93	53.556	Nannospalax_galili
ENSSLDG00000003130	upf3b	92	54.118	ENSNLEG00000014897	UPF3B	86	56.901	Nomascus_leucogenys
ENSSLDG00000003130	upf3b	97	54.230	ENSODEG00000002186	-	96	53.796	Octodon_degus
ENSSLDG00000003130	upf3b	100	85.408	ENSONIG00000002536	upf3b	100	86.266	Oreochromis_niloticus
ENSSLDG00000003130	upf3b	82	40.885	ENSOANG00000006985	-	55	53.846	Ornithorhynchus_anatinus
ENSSLDG00000003130	upf3b	97	50.625	ENSOCUG00000010213	UPF3B	96	52.842	Oryctolagus_cuniculus
ENSSLDG00000003130	upf3b	100	77.657	ENSORLG00000001026	upf3b	100	77.657	Oryzias_latipes
ENSSLDG00000003130	upf3b	92	52.477	ENSORLG00020014317	upf3a	89	52.796	Oryzias_latipes_hni
ENSSLDG00000003130	upf3b	100	77.223	ENSORLG00020003758	upf3b	100	77.821	Oryzias_latipes_hni
ENSSLDG00000003130	upf3b	100	77.007	ENSORLG00015012954	upf3b	100	77.007	Oryzias_latipes_hsok
ENSSLDG00000003130	upf3b	100	77.440	ENSOMEG00000014736	upf3b	100	77.874	Oryzias_melastigma
ENSSLDG00000003130	upf3b	92	50.114	ENSOMEG00000014425	upf3a	82	50.843	Oryzias_melastigma
ENSSLDG00000003130	upf3b	97	50.862	ENSOGAG00000033003	-	88	54.306	Otolemur_garnettii
ENSSLDG00000003130	upf3b	97	51.836	ENSOGAG00000004643	-	96	54.113	Otolemur_garnettii
ENSSLDG00000003130	upf3b	90	45.803	ENSOARG00000007869	-	94	43.373	Ovis_aries
ENSSLDG00000003130	upf3b	97	51.559	ENSOARG00000016051	-	96	53.112	Ovis_aries
ENSSLDG00000003130	upf3b	97	56.156	ENSPPAG00000040390	UPF3B	96	54.545	Pan_paniscus
ENSSLDG00000003130	upf3b	97	52.903	ENSPPRG00000023536	UPF3B	93	55.333	Panthera_pardus
ENSSLDG00000003130	upf3b	97	51.240	ENSPTIG00000015264	UPF3B	93	54.783	Panthera_tigris_altaica
ENSSLDG00000003130	upf3b	97	56.156	ENSPTRG00000022228	UPF3B	96	54.545	Pan_troglodytes
ENSSLDG00000003130	upf3b	97	56.156	ENSPANG00000000900	UPF3B	97	66.986	Papio_anubis
ENSSLDG00000003130	upf3b	90	48.791	ENSPKIG00000004422	upf3a	50	58.159	Paramormyrops_kingsleyae
ENSSLDG00000003130	upf3b	99	68.534	ENSPKIG00000019226	upf3b	93	86.806	Paramormyrops_kingsleyae
ENSSLDG00000003130	upf3b	88	52.009	ENSPSIG00000007468	UPF3A	54	64.655	Pelodiscus_sinensis
ENSSLDG00000003130	upf3b	56	63.498	ENSPSIG00000005833	UPF3B	67	76.190	Pelodiscus_sinensis
ENSSLDG00000003130	upf3b	57	87.023	ENSPMGG00000016067	upf3b	95	87.023	Periophthalmus_magnuspinnatus
ENSSLDG00000003130	upf3b	94	53.187	ENSPEMG00000012352	Upf3b	93	52.876	Peromyscus_maniculatus_bairdii
ENSSLDG00000003130	upf3b	80	52.766	ENSPCIG00000019590	-	63	69.655	Phascolarctos_cinereus
ENSSLDG00000003130	upf3b	89	59.951	ENSPCIG00000028914	UPF3B	83	58.250	Phascolarctos_cinereus
ENSSLDG00000003130	upf3b	93	39.869	ENSPFOG00000013222	upf3a	85	42.489	Poecilia_formosa
ENSSLDG00000003130	upf3b	100	79.004	ENSPLAG00000019922	upf3b	100	80.519	Poecilia_latipinna
ENSSLDG00000003130	upf3b	93	50.114	ENSPLAG00000011960	upf3a	85	49.886	Poecilia_latipinna
ENSSLDG00000003130	upf3b	100	79.004	ENSPLAG00000005105	upf3b	100	80.519	Poecilia_latipinna
ENSSLDG00000003130	upf3b	100	78.788	ENSPMEG00000023532	upf3b	100	80.303	Poecilia_mexicana
ENSSLDG00000003130	upf3b	56	66.667	ENSPPYG00000020675	-	63	66.825	Pongo_abelii
ENSSLDG00000003130	upf3b	98	53.689	ENSPCAG00000009464	UPF3B	97	52.273	Procavia_capensis
ENSSLDG00000003130	upf3b	97	54.043	ENSPCOG00000021960	UPF3B	93	55.556	Propithecus_coquereli
ENSSLDG00000003130	upf3b	89	46.618	ENSPVAG00000005656	UPF3A	85	44.496	Pteropus_vampyrus
ENSSLDG00000003130	upf3b	97	46.234	ENSPVAG00000014075	UPF3B	60	54.608	Pteropus_vampyrus
ENSSLDG00000003130	upf3b	100	86.768	ENSPNYG00000009846	upf3b	100	86.551	Pundamilia_nyererei
ENSSLDG00000003130	upf3b	100	74.304	ENSPNAG00000021528	upf3b	100	85.659	Pygocentrus_nattereri
ENSSLDG00000003130	upf3b	94	53.744	ENSRNOG00000039994	Upf3b	93	53.556	Rattus_norvegicus
ENSSLDG00000003130	upf3b	81	56.150	ENSRBIG00000037219	UPF3B	95	54.667	Rhinopithecus_bieti
ENSSLDG00000003130	upf3b	87	50.245	ENSRROG00000012212	UPF3A	82	45.199	Rhinopithecus_roxellana
ENSSLDG00000003130	upf3b	97	56.156	ENSRROG00000041031	UPF3B	97	66.986	Rhinopithecus_roxellana
ENSSLDG00000003130	upf3b	97	52.700	ENSSBOG00000019740	UPF3B	99	66.507	Saimiri_boliviensis_boliviensis
ENSSLDG00000003130	upf3b	91	51.054	ENSSHAG00000009895	UPF3A	54	64.407	Sarcophilus_harrisii
ENSSLDG00000003130	upf3b	98	56.108	ENSSHAG00000008634	UPF3B	99	54.583	Sarcophilus_harrisii
ENSSLDG00000003130	upf3b	100	69.612	ENSSFOG00015005614	upf3b	100	69.330	Scleropages_formosus
ENSSLDG00000003130	upf3b	100	83.691	ENSSMAG00000012913	upf3b	100	92.578	Scophthalmus_maximus
ENSSLDG00000003130	upf3b	92	45.972	ENSSDUG00000009680	upf3a	55	77.528	Seriola_dumerili
ENSSLDG00000003130	upf3b	100	99.132	ENSSDUG00000005682	upf3b	100	99.132	Seriola_dumerili
ENSSLDG00000003130	upf3b	86	52.812	ENSSARG00000004147	UPF3B	93	55.231	Sorex_araneus
ENSSLDG00000003130	upf3b	98	58.091	ENSSPUG00000013082	UPF3B	99	56.224	Sphenodon_punctatus
ENSSLDG00000003130	upf3b	99	87.336	ENSSPAG00000009989	upf3b	99	88.428	Stegastes_partitus
ENSSLDG00000003130	upf3b	97	52.452	ENSSSCG00000012617	UPF3B	96	53.863	Sus_scrofa
ENSSLDG00000003130	upf3b	87	52.927	ENSTGUG00000009493	UPF3A	98	51.238	Taeniopygia_guttata
ENSSLDG00000003130	upf3b	90	61.631	ENSTGUG00000003413	UPF3B	96	61.871	Taeniopygia_guttata
ENSSLDG00000003130	upf3b	100	80.043	ENSTRUG00000010645	upf3b	100	78.959	Takifugu_rubripes
ENSSLDG00000003130	upf3b	100	70.043	ENSTNIG00000015763	upf3b	100	65.948	Tetraodon_nigroviridis
ENSSLDG00000003130	upf3b	94	47.639	ENSTBEG00000003229	UPF3B	75	56.777	Tupaia_belangeri
ENSSLDG00000003130	upf3b	97	54.818	ENSUAMG00000024565	UPF3B	96	53.247	Ursus_americanus
ENSSLDG00000003130	upf3b	89	53.012	ENSUMAG00000002150	UPF3B	87	53.027	Ursus_maritimus
ENSSLDG00000003130	upf3b	84	51.493	ENSVPAG00000009971	UPF3B	95	53.333	Vicugna_pacos
ENSSLDG00000003130	upf3b	97	52.700	ENSVVUG00000011594	UPF3B	97	66.986	Vulpes_vulpes
ENSSLDG00000003130	upf3b	94	53.620	ENSXETG00000007440	upf3b	85	77.551	Xenopus_tropicalis
ENSSLDG00000003130	upf3b	100	71.429	ENSXCOG00000016586	upf3b	98	90.306	Xiphophorus_couchianus
ENSSLDG00000003130	upf3b	62	72.000	ENSXMAG00000013452	upf3a	84	48.747	Xiphophorus_maculatus
ENSSLDG00000003130	upf3b	100	77.706	ENSXMAG00000013680	upf3b	100	79.221	Xiphophorus_maculatus