EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000003619 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 14086 bases
Position: chrPEQF01099358.1:114035-128120
Accession: 111671455
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000004677	CPSF_A	PF03178.15	5.2e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000004830	-	4257	XM_023428542	ENSSLDP00000004677	1418 (aa)	XP_023284310	-

Gene Model

Click here to download ENSSLDG00000003619's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000003619's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000003619	cpsf1	100	79.060	ENSG00000071894	CPSF1	100	80.093	Homo_sapiens
ENSSLDG00000003619	cpsf1	100	91.853	ENSAPOG00000019621	cpsf1	100	91.989	Acanthochromis_polyacanthus
ENSSLDG00000003619	cpsf1	96	78.875	ENSAMEG00000005557	CPSF1	99	78.587	Ailuropoda_melanoleuca
ENSSLDG00000003619	cpsf1	100	91.389	ENSACIG00000006112	cpsf1	100	91.597	Amphilophus_citrinellus
ENSSLDG00000003619	cpsf1	100	92.409	ENSAOCG00000007120	cpsf1	100	92.478	Amphiprion_ocellaris
ENSSLDG00000003619	cpsf1	100	93.246	ENSAPEG00000005755	cpsf1	100	93.384	Amphiprion_percula
ENSSLDG00000003619	cpsf1	100	91.051	ENSATEG00000011097	cpsf1	100	91.864	Anabas_testudineus
ENSSLDG00000003619	cpsf1	93	74.852	ENSACAG00000009655	CPSF1	100	74.777	Anolis_carolinensis
ENSSLDG00000003619	cpsf1	100	79.391	ENSANAG00000036514	CPSF1	100	79.599	Aotus_nancymaae
ENSSLDG00000003619	cpsf1	100	92.048	ENSACLG00000012231	cpsf1	100	91.766	Astatotilapia_calliptera
ENSSLDG00000003619	cpsf1	100	81.844	ENSAMXG00000008485	cpsf1	100	81.704	Astyanax_mexicanus
ENSSLDG00000003619	cpsf1	100	78.072	ENSBTAG00000008355	CPSF1	100	79.095	Bos_taurus
ENSSLDG00000003619	cpsf1	100	33.289	WBGene00022301	cpsf-1	99	41.243	Caenorhabditis_elegans
ENSSLDG00000003619	cpsf1	100	79.599	ENSCJAG00000021421	CPSF1	100	79.530	Callithrix_jacchus
ENSSLDG00000003619	cpsf1	96	80.303	ENSCAFG00000001600	CPSF1	100	79.478	Canis_familiaris
ENSSLDG00000003619	cpsf1	100	79.144	ENSCAFG00020020821	CPSF1	100	79.144	Canis_lupus_dingo
ENSSLDG00000003619	cpsf1	100	76.197	ENSCHIG00000015833	CPSF1	100	75.833	Capra_hircus
ENSSLDG00000003619	cpsf1	100	79.806	ENSTSYG00000028560	CPSF1	100	81.019	Carlito_syrichta
ENSSLDG00000003619	cpsf1	96	79.798	ENSCAPG00000014921	CPSF1	98	79.654	Cavia_aperea
ENSSLDG00000003619	cpsf1	100	78.423	ENSCPOG00000011448	CPSF1	100	78.285	Cavia_porcellus
ENSSLDG00000003619	cpsf1	100	79.876	ENSCCAG00000037658	CPSF1	100	80.275	Cebus_capucinus
ENSSLDG00000003619	cpsf1	100	79.115	ENSCATG00000037234	CPSF1	100	80.093	Cercocebus_atys
ENSSLDG00000003619	cpsf1	100	79.723	ENSCLAG00000012166	CPSF1	100	79.585	Chinchilla_lanigera
ENSSLDG00000003619	cpsf1	100	79.461	ENSCSAG00000008502	CPSF1	100	79.322	Chlorocebus_sabaeus
ENSSLDG00000003619	cpsf1	99	81.215	ENSCPBG00000018910	CPSF1	96	81.425	Chrysemys_picta_bellii
ENSSLDG00000003619	cpsf1	96	49.061	ENSCING00000000514	-	100	49.061	Ciona_intestinalis
ENSSLDG00000003619	cpsf1	99	48.860	ENSCSAVG00000002293	-	99	50.698	Ciona_savignyi
ENSSLDG00000003619	cpsf1	96	77.698	ENSCANG00000032760	CPSF1	100	80.556	Colobus_angolensis_palliatus
ENSSLDG00000003619	cpsf1	100	79.516	ENSCGRG00001016344	Cpsf1	100	79.377	Cricetulus_griseus_chok1gshd
ENSSLDG00000003619	cpsf1	100	77.924	ENSCGRG00000003118	Cpsf1	100	77.785	Cricetulus_griseus_crigri
ENSSLDG00000003619	cpsf1	100	90.126	ENSCSEG00000013464	cpsf1	100	90.126	Cynoglossus_semilaevis
ENSSLDG00000003619	cpsf1	85	88.209	ENSCVAG00000014059	cpsf1	100	81.481	Cyprinodon_variegatus
ENSSLDG00000003619	cpsf1	100	87.939	ENSDARG00000034178	cpsf1	100	88.008	Danio_rerio
ENSSLDG00000003619	cpsf1	56	82.370	ENSDNOG00000043654	CPSF1	94	82.081	Dasypus_novemcinctus
ENSSLDG00000003619	cpsf1	96	79.798	ENSDORG00000006278	Cpsf1	98	80.014	Dipodomys_ordii
ENSSLDG00000003619	cpsf1	100	45.034	FBgn0024698	Cpsf160	100	45.077	Drosophila_melanogaster
ENSSLDG00000003619	cpsf1	80	85.235	ENSETEG00000006022	CPSF1	83	85.235	Echinops_telfairi
ENSSLDG00000003619	cpsf1	100	79.282	ENSEASG00005010774	CPSF1	100	79.351	Equus_asinus_asinus
ENSSLDG00000003619	cpsf1	100	79.213	ENSECAG00000022209	CPSF1	100	79.282	Equus_caballus
ENSSLDG00000003619	cpsf1	100	79.434	ENSEEUG00000000471	CPSF1	100	79.158	Erinaceus_europaeus
ENSSLDG00000003619	cpsf1	100	86.740	ENSELUG00000012271	cpsf1	100	86.878	Esox_lucius
ENSSLDG00000003619	cpsf1	100	79.917	ENSFDAG00000016060	CPSF1	100	79.778	Fukomys_damarensis
ENSSLDG00000003619	cpsf1	100	89.236	ENSFHEG00000016801	cpsf1	100	89.229	Fundulus_heteroclitus
ENSSLDG00000003619	cpsf1	100	87.690	ENSGMOG00000000796	cpsf1	100	87.906	Gadus_morhua
ENSSLDG00000003619	cpsf1	95	91.071	ENSGAFG00000018890	cpsf1	100	91.071	Gambusia_affinis
ENSSLDG00000003619	cpsf1	100	90.828	ENSGACG00000008703	cpsf1	100	90.897	Gasterosteus_aculeatus
ENSSLDG00000003619	cpsf1	100	78.138	ENSGAGG00000004276	CPSF1	98	82.176	Gopherus_agassizii
ENSSLDG00000003619	cpsf1	100	79.239	ENSGGOG00000016185	CPSF1	100	80.093	Gorilla_gorilla
ENSSLDG00000003619	cpsf1	100	94.674	ENSHBUG00000018900	cpsf1	100	94.394	Haplochromis_burtoni
ENSSLDG00000003619	cpsf1	100	79.723	ENSHGLG00000016139	CPSF1	100	79.585	Heterocephalus_glaber_female
ENSSLDG00000003619	cpsf1	100	79.654	ENSHGLG00100009750	CPSF1	100	79.516	Heterocephalus_glaber_male
ENSSLDG00000003619	cpsf1	100	88.259	ENSHCOG00000018509	cpsf1	100	88.328	Hippocampus_comes
ENSSLDG00000003619	cpsf1	100	83.310	ENSIPUG00000011259	cpsf1	100	83.379	Ictalurus_punctatus
ENSSLDG00000003619	cpsf1	96	80.014	ENSSTOG00000009957	CPSF1	98	80.014	Ictidomys_tridecemlineatus
ENSSLDG00000003619	cpsf1	100	80.208	ENSJJAG00000023002	Cpsf1	100	80.139	Jaculus_jaculus
ENSSLDG00000003619	cpsf1	91	93.730	ENSKMAG00000001940	cpsf1	99	93.730	Kryptolebias_marmoratus
ENSSLDG00000003619	cpsf1	100	90.632	ENSLBEG00000003601	cpsf1	100	90.840	Labrus_bergylta
ENSSLDG00000003619	cpsf1	88	79.641	ENSLACG00000000233	CPSF1	100	67.773	Latimeria_chalumnae
ENSSLDG00000003619	cpsf1	100	82.885	ENSLOCG00000008484	cpsf1	100	83.437	Lepisosteus_oculatus
ENSSLDG00000003619	cpsf1	96	80.159	ENSLAFG00000022601	CPSF1	99	80.087	Loxodonta_africana
ENSSLDG00000003619	cpsf1	100	79.184	ENSMFAG00000037013	CPSF1	100	80.093	Macaca_fascicularis
ENSSLDG00000003619	cpsf1	100	79.804	ENSMMUG00000007380	CPSF1	100	80.093	Macaca_mulatta
ENSSLDG00000003619	cpsf1	96	80.245	ENSMNEG00000043564	CPSF1	100	80.093	Macaca_nemestrina
ENSSLDG00000003619	cpsf1	100	79.184	ENSMLEG00000043010	CPSF1	100	80.093	Mandrillus_leucophaeus
ENSSLDG00000003619	cpsf1	100	91.989	ENSMAMG00000003803	cpsf1	100	92.600	Mastacembelus_armatus
ENSSLDG00000003619	cpsf1	100	92.048	ENSMZEG00005001168	cpsf1	100	91.766	Maylandia_zebra
ENSSLDG00000003619	cpsf1	100	79.585	ENSMAUG00000003601	Cpsf1	100	79.516	Mesocricetus_auratus
ENSSLDG00000003619	cpsf1	100	79.516	ENSMICG00000015767	CPSF1	100	79.377	Microcebus_murinus
ENSSLDG00000003619	cpsf1	100	79.308	ENSMOCG00000022758	Cpsf1	100	79.239	Microtus_ochrogaster
ENSSLDG00000003619	cpsf1	100	93.575	ENSMMOG00000021245	cpsf1	100	93.506	Mola_mola
ENSSLDG00000003619	cpsf1	100	79.628	ENSMODG00000010755	CPSF1	100	79.628	Monodelphis_domestica
ENSSLDG00000003619	cpsf1	100	90.959	ENSMALG00000020545	cpsf1	100	91.366	Monopterus_albus
ENSSLDG00000003619	cpsf1	100	79.723	MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.654	Mus_caroli
ENSSLDG00000003619	cpsf1	100	79.723	ENSMUSG00000034022	Cpsf1	100	79.654	Mus_musculus
ENSSLDG00000003619	cpsf1	100	79.792	MGP_PahariEiJ_G0019946	Cpsf1	100	79.723	Mus_pahari
ENSSLDG00000003619	cpsf1	100	79.792	MGP_SPRETEiJ_G0020839	Cpsf1	100	79.723	Mus_spretus
ENSSLDG00000003619	cpsf1	94	80.178	ENSMPUG00000006419	CPSF1	93	80.104	Mustela_putorius_furo
ENSSLDG00000003619	cpsf1	100	79.516	ENSNGAG00000022460	Cpsf1	100	79.446	Nannospalax_galili
ENSSLDG00000003619	cpsf1	100	88.289	ENSNBRG00000000813	cpsf1	100	88.359	Neolamprologus_brichardi
ENSSLDG00000003619	cpsf1	86	69.369	ENSNLEG00000010633	-	100	80.093	Nomascus_leucogenys
ENSSLDG00000003619	cpsf1	82	87.209	ENSMEUG00000014922	CPSF1	84	87.209	Notamacropus_eugenii
ENSSLDG00000003619	cpsf1	60	88.421	ENSOPRG00000004693	-	70	88.421	Ochotona_princeps
ENSSLDG00000003619	cpsf1	100	79.792	ENSODEG00000013995	CPSF1	100	79.654	Octodon_degus
ENSSLDG00000003619	cpsf1	100	93.490	ENSONIG00000007676	cpsf1	100	93.490	Oreochromis_niloticus
ENSSLDG00000003619	cpsf1	58	77.857	ENSOANG00000010716	CPSF1	89	77.857	Ornithorhynchus_anatinus
ENSSLDG00000003619	cpsf1	100	89.413	ENSORLG00000013544	cpsf1	100	89.344	Oryzias_latipes
ENSSLDG00000003619	cpsf1	100	89.413	ENSORLG00020021693	cpsf1	100	89.344	Oryzias_latipes_hni
ENSSLDG00000003619	cpsf1	100	89.413	ENSORLG00015009979	cpsf1	100	89.344	Oryzias_latipes_hsok
ENSSLDG00000003619	cpsf1	100	89.193	ENSOMEG00000011849	cpsf1	100	89.535	Oryzias_melastigma
ENSSLDG00000003619	cpsf1	100	79.806	ENSOGAG00000000315	CPSF1	100	79.737	Otolemur_garnettii
ENSSLDG00000003619	cpsf1	100	79.253	ENSPPAG00000019280	CPSF1	100	81.448	Pan_paniscus
ENSSLDG00000003619	cpsf1	100	77.906	ENSPTRG00000051253	-	100	81.448	Pan_troglodytes
ENSSLDG00000003619	cpsf1	100	79.253	ENSPTRG00000049288	-	100	81.448	Pan_troglodytes
ENSSLDG00000003619	cpsf1	96	80.245	ENSPANG00000015005	CPSF1	100	80.093	Papio_anubis
ENSSLDG00000003619	cpsf1	100	87.933	ENSPKIG00000002582	cpsf1	100	88.141	Paramormyrops_kingsleyae
ENSSLDG00000003619	cpsf1	100	79.766	ENSPCIG00000009035	CPSF1	100	79.766	Phascolarctos_cinereus
ENSSLDG00000003619	cpsf1	100	88.171	ENSPFOG00000012870	cpsf1	100	88.035	Poecilia_formosa
ENSSLDG00000003619	cpsf1	100	87.976	ENSPREG00000016307	cpsf1	100	88.313	Poecilia_reticulata
ENSSLDG00000003619	cpsf1	100	72.218	ENSPPYG00000018973	CPSF1	100	72.218	Pongo_abelii
ENSSLDG00000003619	cpsf1	91	84.943	ENSPCAG00000011541	CPSF1	93	84.943	Procavia_capensis
ENSSLDG00000003619	cpsf1	100	76.247	ENSPCOG00000020001	CPSF1	100	80.093	Propithecus_coquereli
ENSSLDG00000003619	cpsf1	90	88.000	ENSPVAG00000006761	CPSF1	91	88.000	Pteropus_vampyrus
ENSSLDG00000003619	cpsf1	100	93.361	ENSPNYG00000004906	cpsf1	100	93.084	Pundamilia_nyererei
ENSSLDG00000003619	cpsf1	100	84.621	ENSPNAG00000024395	cpsf1	100	84.551	Pygocentrus_nattereri
ENSSLDG00000003619	cpsf1	100	79.695	ENSRNOG00000030705	Cpsf1	100	79.626	Rattus_norvegicus
ENSSLDG00000003619	cpsf1	100	79.184	ENSRBIG00000044907	CPSF1	100	80.556	Rhinopithecus_bieti
ENSSLDG00000003619	cpsf1	100	79.253	ENSRROG00000044861	CPSF1	100	80.556	Rhinopithecus_roxellana
ENSSLDG00000003619	cpsf1	96	80.461	ENSSBOG00000027177	CPSF1	99	80.389	Saimiri_boliviensis_boliviensis
ENSSLDG00000003619	cpsf1	100	79.560	ENSSHAG00000006500	CPSF1	100	79.628	Sarcophilus_harrisii
ENSSLDG00000003619	cpsf1	100	85.714	ENSSFOG00015004606	cpsf1	100	88.274	Scleropages_formosus
ENSSLDG00000003619	cpsf1	100	91.706	ENSSMAG00000020547	cpsf1	100	91.638	Scophthalmus_maximus
ENSSLDG00000003619	cpsf1	100	99.507	ENSSDUG00000001100	cpsf1	100	99.507	Seriola_dumerili
ENSSLDG00000003619	cpsf1	89	76.471	ENSSARG00000003643	CPSF1	92	76.229	Sorex_araneus
ENSSLDG00000003619	cpsf1	96	82.806	ENSSPUG00000014396	CPSF1	99	82.662	Sphenodon_punctatus
ENSSLDG00000003619	cpsf1	100	92.052	ENSSPAG00000005349	cpsf1	100	92.188	Stegastes_partitus
ENSSLDG00000003619	cpsf1	100	78.492	ENSSSCG00000005906	CPSF1	100	78.354	Sus_scrofa
ENSSLDG00000003619	cpsf1	97	89.170	ENSTRUG00000013134	cpsf1	100	88.959	Takifugu_rubripes
ENSSLDG00000003619	cpsf1	100	89.629	ENSTNIG00000014027	cpsf1	100	89.629	Tetraodon_nigroviridis
ENSSLDG00000003619	cpsf1	77	74.739	ENSTBEG00000001756	CPSF1	91	74.739	Tupaia_belangeri
ENSSLDG00000003619	cpsf1	89	83.793	ENSTTRG00000001937	CPSF1	90	83.621	Tursiops_truncatus
ENSSLDG00000003619	cpsf1	96	80.375	ENSUAMG00000006476	CPSF1	97	80.087	Ursus_americanus
ENSSLDG00000003619	cpsf1	100	90.483	ENSXCOG00000003608	cpsf1	100	90.483	Xiphophorus_couchianus
ENSSLDG00000003619	cpsf1	100	89.540	ENSXMAG00000005798	cpsf1	100	89.679	Xiphophorus_maculatus