EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000004136 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 2979 bases
Position: chrPEQF01007975.1:120-3098
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000005199	LSM	PF01423.22	2.6e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000005366	-	2902	-	ENSSLDP00000005199	116 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000004136's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000004136's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000004136	-	53	46.774	ENSSLDG00000005119	snrpf	72	46.774
ENSSLDG00000004136	-	59	100.000	ENSSLDG00000020533	lsm6	72	100.000
ENSSLDG00000004136	-	59	36.232	ENSSLDG00000003885	-	84	36.232

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000004136	-	59	97.101	ENSG00000164167	LSM6	86	97.101	Homo_sapiens
ENSSLDG00000004136	-	59	100.000	ENSAPOG00000019832	lsm6	86	100.000	Acanthochromis_polyacanthus
ENSSLDG00000004136	-	59	97.101	ENSAMEG00000016671	LSM6	86	97.101	Ailuropoda_melanoleuca
ENSSLDG00000004136	-	59	100.000	ENSACIG00000016711	lsm6	86	100.000	Amphilophus_citrinellus
ENSSLDG00000004136	-	59	100.000	ENSAPEG00000023992	lsm6	92	98.571	Amphiprion_percula
ENSSLDG00000004136	-	59	100.000	ENSATEG00000012610	lsm6	86	100.000	Anabas_testudineus
ENSSLDG00000004136	-	57	96.970	ENSAPLG00000012594	LSM6	85	96.970	Anas_platyrhynchos
ENSSLDG00000004136	-	59	97.101	ENSACAG00000004004	LSM6	86	97.101	Anolis_carolinensis
ENSSLDG00000004136	-	59	97.101	ENSANAG00000030568	-	86	97.101	Aotus_nancymaae
ENSSLDG00000004136	-	54	92.063	ENSANAG00000021839	-	84	92.063	Aotus_nancymaae
ENSSLDG00000004136	-	59	100.000	ENSACLG00000025621	lsm6	86	100.000	Astatotilapia_calliptera
ENSSLDG00000004136	-	59	98.551	ENSAMXG00000038738	lsm6	86	98.551	Astyanax_mexicanus
ENSSLDG00000004136	-	59	89.855	ENSBTAG00000052085	-	86	89.855	Bos_taurus
ENSSLDG00000004136	-	59	97.101	ENSBTAG00000014060	LSM6	86	97.101	Bos_taurus
ENSSLDG00000004136	-	57	80.303	WBGene00003080	lsm-6	86	80.303	Caenorhabditis_elegans
ENSSLDG00000004136	-	59	97.101	ENSCJAG00000002482	LSM6	86	97.101	Callithrix_jacchus
ENSSLDG00000004136	-	59	97.101	ENSCAFG00000007738	LSM6	86	97.101	Canis_familiaris
ENSSLDG00000004136	-	59	97.101	ENSCAFG00020025902	LSM6	86	97.101	Canis_lupus_dingo
ENSSLDG00000004136	-	59	97.101	ENSCHIG00000010334	-	86	97.101	Capra_hircus
ENSSLDG00000004136	-	59	97.101	ENSCHIG00000012864	-	97	97.101	Capra_hircus
ENSSLDG00000004136	-	59	79.710	ENSCHIG00000024198	-	80	79.710	Capra_hircus
ENSSLDG00000004136	-	57	86.364	ENSTSYG00000012759	-	87	86.364	Carlito_syrichta
ENSSLDG00000004136	-	59	97.101	ENSTSYG00000026972	LSM6	86	97.101	Carlito_syrichta
ENSSLDG00000004136	-	59	97.101	ENSCAPG00000008104	LSM6	86	97.101	Cavia_aperea
ENSSLDG00000004136	-	56	93.846	ENSCAPG00000011179	-	100	93.846	Cavia_aperea
ENSSLDG00000004136	-	59	97.101	ENSCPOG00000032655	LSM6	86	97.101	Cavia_porcellus
ENSSLDG00000004136	-	59	97.101	ENSCCAG00000036437	LSM6	86	97.101	Cebus_capucinus
ENSSLDG00000004136	-	59	95.652	ENSCCAG00000020665	-	86	95.652	Cebus_capucinus
ENSSLDG00000004136	-	59	97.101	ENSCATG00000002770	-	86	97.101	Cercocebus_atys
ENSSLDG00000004136	-	62	72.000	ENSCATG00000038799	-	100	72.000	Cercocebus_atys
ENSSLDG00000004136	-	59	97.101	ENSCLAG00000005495	LSM6	86	97.101	Chinchilla_lanigera
ENSSLDG00000004136	-	59	76.812	ENSCLAG00000005685	-	97	76.812	Chinchilla_lanigera
ENSSLDG00000004136	-	59	97.101	ENSCSAG00000003421	LSM6	86	97.101	Chlorocebus_sabaeus
ENSSLDG00000004136	-	59	97.101	ENSCPBG00000027472	LSM6	73	97.101	Chrysemys_picta_bellii
ENSSLDG00000004136	-	57	95.455	ENSCING00000019152	-	80	95.455	Ciona_intestinalis
ENSSLDG00000004136	-	57	96.970	ENSCSAVG00000002065	-	80	96.970	Ciona_savignyi
ENSSLDG00000004136	-	59	97.101	ENSCANG00000006849	-	86	97.101	Colobus_angolensis_palliatus
ENSSLDG00000004136	-	59	97.101	ENSCANG00000041263	-	86	97.101	Colobus_angolensis_palliatus
ENSSLDG00000004136	-	53	81.967	ENSCANG00000035214	-	80	81.967	Colobus_angolensis_palliatus
ENSSLDG00000004136	-	59	97.101	ENSCGRG00001017142	Lsm6	86	97.101	Cricetulus_griseus_chok1gshd
ENSSLDG00000004136	-	59	97.101	ENSCGRG00000008320	Lsm6	86	97.101	Cricetulus_griseus_crigri
ENSSLDG00000004136	-	59	100.000	ENSCSEG00000000423	lsm6	86	100.000	Cynoglossus_semilaevis
ENSSLDG00000004136	-	59	100.000	ENSCVAG00000001592	lsm6	86	100.000	Cyprinodon_variegatus
ENSSLDG00000004136	-	59	98.551	ENSDARG00000036995	lsm6	86	98.551	Danio_rerio
ENSSLDG00000004136	-	59	95.652	ENSDNOG00000044848	-	86	95.652	Dasypus_novemcinctus
ENSSLDG00000004136	-	63	93.151	ENSDNOG00000040186	-	78	93.151	Dasypus_novemcinctus
ENSSLDG00000004136	-	59	97.101	ENSDORG00000000933	Lsm6	86	97.101	Dipodomys_ordii
ENSSLDG00000004136	-	57	81.818	FBgn0034564	CG9344	84	81.818	Drosophila_melanogaster
ENSSLDG00000004136	-	59	97.101	ENSEBUG00000017073	lsm6	86	97.101	Eptatretus_burgeri
ENSSLDG00000004136	-	60	97.143	ENSEASG00005001533	LSM6	73	97.143	Equus_asinus_asinus
ENSSLDG00000004136	-	59	97.101	ENSECAG00000021036	LSM6	86	97.101	Equus_caballus
ENSSLDG00000004136	-	59	64.706	ENSEEUG00000002101	LSM6	86	64.706	Erinaceus_europaeus
ENSSLDG00000004136	-	59	98.551	ENSELUG00000014301	LSM6	86	98.551	Esox_lucius
ENSSLDG00000004136	-	59	97.101	ENSFCAG00000003047	LSM6	86	97.101	Felis_catus
ENSSLDG00000004136	-	59	97.101	ENSFALG00000005509	LSM6	79	97.101	Ficedula_albicollis
ENSSLDG00000004136	-	59	97.101	ENSFDAG00000020913	-	86	97.101	Fukomys_damarensis
ENSSLDG00000004136	-	59	86.957	ENSFDAG00000019073	-	86	86.957	Fukomys_damarensis
ENSSLDG00000004136	-	65	96.000	ENSFHEG00000007948	lsm6	100	96.000	Fundulus_heteroclitus
ENSSLDG00000004136	-	59	100.000	ENSGMOG00000015550	lsm6	86	100.000	Gadus_morhua
ENSSLDG00000004136	-	59	97.101	ENSGALG00000009985	LSM6	86	97.101	Gallus_gallus
ENSSLDG00000004136	-	59	100.000	ENSGAFG00000017763	lsm6	86	100.000	Gambusia_affinis
ENSSLDG00000004136	-	59	100.000	ENSGACG00000017223	lsm6	86	100.000	Gasterosteus_aculeatus
ENSSLDG00000004136	-	59	97.101	ENSGAGG00000020980	LSM6	86	97.101	Gopherus_agassizii
ENSSLDG00000004136	-	59	97.101	ENSGGOG00000001310	LSM6	86	97.101	Gorilla_gorilla
ENSSLDG00000004136	-	59	100.000	ENSHBUG00000008618	lsm6	86	100.000	Haplochromis_burtoni
ENSSLDG00000004136	-	59	97.101	ENSHGLG00000000205	LSM6	86	97.101	Heterocephalus_glaber_female
ENSSLDG00000004136	-	59	97.101	ENSHGLG00100014341	LSM6	86	97.101	Heterocephalus_glaber_male
ENSSLDG00000004136	-	59	100.000	ENSHCOG00000005591	lsm6	86	100.000	Hippocampus_comes
ENSSLDG00000004136	-	59	97.101	ENSIPUG00000004508	lsm6	86	97.101	Ictalurus_punctatus
ENSSLDG00000004136	-	59	97.101	ENSSTOG00000002678	LSM6	86	97.101	Ictidomys_tridecemlineatus
ENSSLDG00000004136	-	57	74.242	ENSJJAG00000016942	-	82	74.242	Jaculus_jaculus
ENSSLDG00000004136	-	59	97.101	ENSJJAG00000013845	-	86	97.101	Jaculus_jaculus
ENSSLDG00000004136	-	66	81.579	ENSJJAG00000011211	-	91	81.579	Jaculus_jaculus
ENSSLDG00000004136	-	59	100.000	ENSKMAG00000004105	lsm6	86	100.000	Kryptolebias_marmoratus
ENSSLDG00000004136	-	59	100.000	ENSLBEG00000018441	lsm6	86	100.000	Labrus_bergylta
ENSSLDG00000004136	-	59	97.101	ENSLACG00000006937	LSM6	86	97.101	Latimeria_chalumnae
ENSSLDG00000004136	-	59	98.551	ENSLOCG00000008852	lsm6	86	98.551	Lepisosteus_oculatus
ENSSLDG00000004136	-	59	97.101	ENSLOCG00000017683	-	86	97.101	Lepisosteus_oculatus
ENSSLDG00000004136	-	59	97.101	ENSLAFG00000001952	LSM6	86	97.101	Loxodonta_africana
ENSSLDG00000004136	-	59	97.101	ENSMFAG00000033073	LSM6	86	97.101	Macaca_fascicularis
ENSSLDG00000004136	-	62	73.333	ENSMNEG00000040412	-	100	73.333	Macaca_nemestrina
ENSSLDG00000004136	-	59	97.101	ENSMNEG00000034820	-	86	97.101	Macaca_nemestrina
ENSSLDG00000004136	-	59	97.101	ENSMLEG00000035153	LSM6	86	97.101	Mandrillus_leucophaeus
ENSSLDG00000004136	-	59	100.000	ENSMAMG00000014029	lsm6	86	100.000	Mastacembelus_armatus
ENSSLDG00000004136	-	59	100.000	ENSMZEG00005009146	lsm6	86	100.000	Maylandia_zebra
ENSSLDG00000004136	-	59	97.101	ENSMGAG00000003802	LSM6	86	97.101	Meleagris_gallopavo
ENSSLDG00000004136	-	59	97.101	ENSMAUG00000014938	Lsm6	86	97.101	Mesocricetus_auratus
ENSSLDG00000004136	-	59	97.101	ENSMICG00000042599	LSM6	86	97.101	Microcebus_murinus
ENSSLDG00000004136	-	59	95.652	ENSMICG00000047411	-	81	95.652	Microcebus_murinus
ENSSLDG00000004136	-	59	97.101	ENSMOCG00000020049	Lsm6	86	97.101	Microtus_ochrogaster
ENSSLDG00000004136	-	59	100.000	ENSMMOG00000005470	lsm6	86	100.000	Mola_mola
ENSSLDG00000004136	-	59	95.652	ENSMMOG00000007379	-	87	95.652	Mola_mola
ENSSLDG00000004136	-	59	97.101	ENSMODG00000000526	LSM6	86	97.101	Monodelphis_domestica
ENSSLDG00000004136	-	90	72.115	ENSMALG00000002419	lsm6	86	100.000	Monopterus_albus
ENSSLDG00000004136	-	59	97.101	MGP_CAROLIEiJ_G0031245	Lsm6	86	97.101	Mus_caroli
ENSSLDG00000004136	-	59	97.101	ENSMUSG00000031683	Lsm6	86	97.101	Mus_musculus
ENSSLDG00000004136	-	59	97.101	MGP_PahariEiJ_G0022851	Lsm6	86	97.101	Mus_pahari
ENSSLDG00000004136	-	59	97.101	MGP_SPRETEiJ_G0032365	Lsm6	86	97.101	Mus_spretus
ENSSLDG00000004136	-	59	97.101	ENSMPUG00000006936	LSM6	80	97.101	Mustela_putorius_furo
ENSSLDG00000004136	-	59	97.101	ENSMLUG00000026355	LSM6	86	97.101	Myotis_lucifugus
ENSSLDG00000004136	-	59	97.101	ENSNGAG00000019116	Lsm6	86	97.101	Nannospalax_galili
ENSSLDG00000004136	-	59	100.000	ENSNBRG00000004887	lsm6	86	100.000	Neolamprologus_brichardi
ENSSLDG00000004136	-	59	97.101	ENSNLEG00000005584	LSM6	86	97.101	Nomascus_leucogenys
ENSSLDG00000004136	-	59	97.101	ENSOPRG00000011199	LSM6	87	97.101	Ochotona_princeps
ENSSLDG00000004136	-	59	85.507	ENSODEG00000018684	-	90	85.507	Octodon_degus
ENSSLDG00000004136	-	59	95.652	ENSODEG00000019419	-	86	95.652	Octodon_degus
ENSSLDG00000004136	-	59	94.203	ENSODEG00000020420	-	86	94.203	Octodon_degus
ENSSLDG00000004136	-	59	95.652	ENSODEG00000002307	-	86	95.652	Octodon_degus
ENSSLDG00000004136	-	59	100.000	ENSONIG00000010005	lsm6	86	100.000	Oreochromis_niloticus
ENSSLDG00000004136	-	58	67.164	ENSOANG00000006894	-	86	67.164	Ornithorhynchus_anatinus
ENSSLDG00000004136	-	58	67.164	ENSOANG00000006895	-	86	67.164	Ornithorhynchus_anatinus
ENSSLDG00000004136	-	59	98.551	ENSORLG00000024158	lsm6	86	98.551	Oryzias_latipes
ENSSLDG00000004136	-	65	94.667	ENSORLG00020017383	lsm6	93	94.667	Oryzias_latipes_hni
ENSSLDG00000004136	-	59	98.551	ENSORLG00015016903	lsm6	86	98.551	Oryzias_latipes_hsok
ENSSLDG00000004136	-	59	100.000	ENSOMEG00000000074	lsm6	86	100.000	Oryzias_melastigma
ENSSLDG00000004136	-	59	97.101	ENSOGAG00000026665	-	86	97.101	Otolemur_garnettii
ENSSLDG00000004136	-	59	97.101	ENSOGAG00000033153	-	86	97.101	Otolemur_garnettii
ENSSLDG00000004136	-	59	89.855	ENSOARG00000011641	-	80	89.855	Ovis_aries
ENSSLDG00000004136	-	60	97.143	ENSOARG00000008509	-	90	97.143	Ovis_aries
ENSSLDG00000004136	-	59	97.101	ENSPPAG00000037929	LSM6	86	97.101	Pan_paniscus
ENSSLDG00000004136	-	59	97.101	ENSPPRG00000012806	LSM6	86	97.101	Panthera_pardus
ENSSLDG00000004136	-	59	97.101	ENSPTIG00000019769	LSM6	86	97.101	Panthera_tigris_altaica
ENSSLDG00000004136	-	59	97.101	ENSPTRG00000016488	LSM6	86	97.101	Pan_troglodytes
ENSSLDG00000004136	-	59	97.101	ENSPANG00000006552	LSM6	86	97.101	Papio_anubis
ENSSLDG00000004136	-	59	98.551	ENSPKIG00000016176	lsm6	86	98.551	Paramormyrops_kingsleyae
ENSSLDG00000004136	-	59	97.101	ENSPSIG00000016942	LSM6	86	97.101	Pelodiscus_sinensis
ENSSLDG00000004136	-	59	100.000	ENSPMGG00000018004	lsm6	86	100.000	Periophthalmus_magnuspinnatus
ENSSLDG00000004136	-	59	97.101	ENSPEMG00000012410	Lsm6	86	97.101	Peromyscus_maniculatus_bairdii
ENSSLDG00000004136	-	59	97.101	ENSPMAG00000006949	lsm6	86	97.101	Petromyzon_marinus
ENSSLDG00000004136	-	63	93.151	ENSPCIG00000023469	LSM6	85	93.151	Phascolarctos_cinereus
ENSSLDG00000004136	-	59	100.000	ENSPFOG00000008881	lsm6	86	100.000	Poecilia_formosa
ENSSLDG00000004136	-	59	100.000	ENSPLAG00000003202	lsm6	86	100.000	Poecilia_latipinna
ENSSLDG00000004136	-	59	100.000	ENSPMEG00000004000	lsm6	86	100.000	Poecilia_mexicana
ENSSLDG00000004136	-	59	100.000	ENSPREG00000023235	lsm6	86	100.000	Poecilia_reticulata
ENSSLDG00000004136	-	59	97.101	ENSPPYG00000015105	LSM6	86	97.101	Pongo_abelii
ENSSLDG00000004136	-	59	97.101	ENSPCOG00000013899	LSM6	86	97.101	Propithecus_coquereli
ENSSLDG00000004136	-	60	100.000	ENSPNYG00000012614	lsm6	86	100.000	Pundamilia_nyererei
ENSSLDG00000004136	-	59	98.551	ENSPNAG00000018779	lsm6	86	98.551	Pygocentrus_nattereri
ENSSLDG00000004136	-	59	97.101	ENSRNOG00000049370	LOC100360750	86	97.101	Rattus_norvegicus
ENSSLDG00000004136	-	59	97.101	ENSRNOG00000030374	Lsm6	86	97.101	Rattus_norvegicus
ENSSLDG00000004136	-	59	97.101	ENSRBIG00000027878	LSM6	86	97.101	Rhinopithecus_bieti
ENSSLDG00000004136	-	59	97.101	ENSRROG00000024868	LSM6	86	97.101	Rhinopithecus_roxellana
ENSSLDG00000004136	-	59	40.278	YDR378C	-	74	45.312	Saccharomyces_cerevisiae
ENSSLDG00000004136	-	59	68.116	ENSSBOG00000028103	-	84	68.116	Saimiri_boliviensis_boliviensis
ENSSLDG00000004136	-	59	97.101	ENSSBOG00000021229	-	86	97.101	Saimiri_boliviensis_boliviensis
ENSSLDG00000004136	-	59	98.551	ENSSFOG00015016480	lsm6	86	98.551	Scleropages_formosus
ENSSLDG00000004136	-	59	100.000	ENSSMAG00000004550	lsm6	90	100.000	Scophthalmus_maximus
ENSSLDG00000004136	-	59	97.101	ENSSPUG00000008657	LSM6	86	97.101	Sphenodon_punctatus
ENSSLDG00000004136	-	59	100.000	ENSSPAG00000003246	lsm6	86	100.000	Stegastes_partitus
ENSSLDG00000004136	-	59	97.101	ENSSSCG00000035973	LSM6	86	97.101	Sus_scrofa
ENSSLDG00000004136	-	59	97.101	ENSTGUG00000002663	LSM6	86	97.101	Taeniopygia_guttata
ENSSLDG00000004136	-	59	100.000	ENSTRUG00000023398	lsm6	86	100.000	Takifugu_rubripes
ENSSLDG00000004136	-	59	100.000	ENSTNIG00000017725	lsm6	86	100.000	Tetraodon_nigroviridis
ENSSLDG00000004136	-	59	97.101	ENSTTRG00000004609	LSM6	86	97.101	Tursiops_truncatus
ENSSLDG00000004136	-	63	93.151	ENSUAMG00000014213	LSM6	60	93.151	Ursus_americanus
ENSSLDG00000004136	-	63	93.151	ENSUMAG00000015727	LSM6	60	93.151	Ursus_maritimus
ENSSLDG00000004136	-	59	97.101	ENSVPAG00000006922	LSM6	86	97.101	Vicugna_pacos
ENSSLDG00000004136	-	59	97.101	ENSVVUG00000009254	LSM6	59	97.101	Vulpes_vulpes
ENSSLDG00000004136	-	59	97.101	ENSXETG00000023683	lsm6	86	97.101	Xenopus_tropicalis
ENSSLDG00000004136	-	66	94.805	ENSXMAG00000009606	lsm6	99	94.805	Xiphophorus_maculatus