EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000004146 (Gene tree)
Gene ID: -
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine/arginine-rich splicing factor 5-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 8742 bases
Position: chrPEQF01099139.1:1472252-1480993
Accession: 111665918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000005230	RRM_1	PF00076.22	2.9e-33	1	2
ENSSLDP00000005230	RRM_1	PF00076.22	2.9e-33	2	2
ENSSLDP00000005230	RRM_3	PF08777.11	1.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000005397	-	2559	XM_023421046	ENSSLDP00000005230	290 (aa)	XP_023276814	UPI000C6F9E8E

Gene Model

Click here to download ENSSLDG00000004146's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000004146's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000004146	srsf5a	58	40.341	ENSSLDG00000016895	-	69	38.636
ENSSLDG00000004146	srsf5a	61	64.641	ENSSLDG00000022841	srsf6a	52	63.536
ENSSLDG00000004146	srsf5a	70	35.484	ENSSLDG00000016868	-	64	40.230
ENSSLDG00000004146	srsf5a	94	48.727	ENSSLDG00000009745	srsf4	97	49.104
ENSSLDG00000004146	srsf5a	63	69.519	ENSSLDG00000023255	srsf5b	84	67.969
ENSSLDG00000004146	srsf5a	72	39.535	ENSSLDG00000012305	srsf9	74	38.342
ENSSLDG00000004146	srsf5a	58	42.286	ENSSLDG00000010543	-	67	41.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000004146	srsf5a	100	96.622	ENSAPOG00000017395	srsf5a	100	96.622	Acanthochromis_polyacanthus
ENSSLDG00000004146	srsf5a	90	79.310	ENSACIG00000011892	srsf5a	98	86.029	Amphilophus_citrinellus
ENSSLDG00000004146	srsf5a	80	88.186	ENSAOCG00000014967	srsf5a	100	91.246	Amphiprion_ocellaris
ENSSLDG00000004146	srsf5a	80	88.186	ENSAPEG00000009297	srsf5a	100	90.909	Amphiprion_percula
ENSSLDG00000004146	srsf5a	90	91.011	ENSATEG00000000198	srsf5a	100	89.153	Anabas_testudineus
ENSSLDG00000004146	srsf5a	63	78.804	ENSAPLG00000002469	-	70	75.543	Anas_platyrhynchos
ENSSLDG00000004146	srsf5a	63	79.781	ENSACAG00000029015	-	68	75.824	Anolis_carolinensis
ENSSLDG00000004146	srsf5a	79	91.213	ENSACLG00000027166	srsf5a	100	86.957	Astatotilapia_calliptera
ENSSLDG00000004146	srsf5a	92	65.799	ENSAMXG00000030476	srsf5a	67	88.108	Astyanax_mexicanus
ENSSLDG00000004146	srsf5a	63	81.421	ENSCPBG00000021518	-	70	77.473	Chrysemys_picta_bellii
ENSSLDG00000004146	srsf5a	63	54.082	ENSCSAVG00000011376	-	78	56.122	Ciona_savignyi
ENSSLDG00000004146	srsf5a	80	89.712	ENSCSEG00000008109	srsf5a	78	89.300	Cynoglossus_semilaevis
ENSSLDG00000004146	srsf5a	79	78.601	ENSCVAG00000016982	srsf5a	96	75.188	Cyprinodon_variegatus
ENSSLDG00000004146	srsf5a	63	88.587	ENSDARG00000029818	srsf5a	100	82.707	Danio_rerio
ENSSLDG00000004146	srsf5a	63	80.311	ENSELUG00000020439	srsf5a	62	80.311	Esox_lucius
ENSSLDG00000004146	srsf5a	63	79.670	ENSFALG00000005098	-	64	75.824	Ficedula_albicollis
ENSSLDG00000004146	srsf5a	81	76.744	ENSFHEG00000003955	srsf5a	97	68.276	Fundulus_heteroclitus
ENSSLDG00000004146	srsf5a	63	90.659	ENSGMOG00000000869	srsf5a	94	87.363	Gadus_morhua
ENSSLDG00000004146	srsf5a	63	79.121	ENSGALG00000033259	SRSF5A	63	75.824	Gallus_gallus
ENSSLDG00000004146	srsf5a	81	75.207	ENSGAFG00000018237	srsf5a	74	65.272	Gambusia_affinis
ENSSLDG00000004146	srsf5a	63	81.421	ENSGAGG00000007312	-	70	77.473	Gopherus_agassizii
ENSSLDG00000004146	srsf5a	79	91.176	ENSHBUG00000014048	srsf5a	100	87.919	Haplochromis_burtoni
ENSSLDG00000004146	srsf5a	63	89.785	ENSHCOG00000017557	srsf5a	62	90.323	Hippocampus_comes
ENSSLDG00000004146	srsf5a	89	68.327	ENSIPUG00000003439	srsf5a	69	84.211	Ictalurus_punctatus
ENSSLDG00000004146	srsf5a	79	71.186	ENSKMAG00000014937	srsf5a	72	80.252	Kryptolebias_marmoratus
ENSSLDG00000004146	srsf5a	63	83.590	ENSLBEG00000017153	srsf5a	91	79.668	Labrus_bergylta
ENSSLDG00000004146	srsf5a	63	84.615	ENSLACG00000017874	-	98	66.667	Latimeria_chalumnae
ENSSLDG00000004146	srsf5a	63	87.027	ENSLOCG00000014075	srsf5a	61	85.946	Lepisosteus_oculatus
ENSSLDG00000004146	srsf5a	100	92.069	ENSMAMG00000000192	srsf5a	100	86.207	Mastacembelus_armatus
ENSSLDG00000004146	srsf5a	79	91.597	ENSMZEG00005010485	srsf5a	100	88.255	Maylandia_zebra
ENSSLDG00000004146	srsf5a	65	76.410	ENSMGAG00000011888	-	96	73.780	Meleagris_gallopavo
ENSSLDG00000004146	srsf5a	100	89.189	ENSMMOG00000009793	srsf5a	100	88.176	Mola_mola
ENSSLDG00000004146	srsf5a	100	84.138	ENSMALG00000021194	srsf5a	90	81.679	Monopterus_albus
ENSSLDG00000004146	srsf5a	79	91.983	ENSNBRG00000000771	srsf5a	100	88.552	Neolamprologus_brichardi
ENSSLDG00000004146	srsf5a	79	91.983	ENSONIG00000019583	srsf5a	100	88.552	Oreochromis_niloticus
ENSSLDG00000004146	srsf5a	79	78.261	ENSORLG00000009268	srsf5a	100	80.345	Oryzias_latipes
ENSSLDG00000004146	srsf5a	79	78.261	ENSORLG00020003281	srsf5	100	80.345	Oryzias_latipes_hni
ENSSLDG00000004146	srsf5a	79	78.261	ENSORLG00015023075	srsf5	100	80.345	Oryzias_latipes_hsok
ENSSLDG00000004146	srsf5a	79	76.856	ENSOMEG00000000628	srsf5a	100	82.069	Oryzias_melastigma
ENSSLDG00000004146	srsf5a	90	75.451	ENSPKIG00000002054	srsf5a	68	86.559	Paramormyrops_kingsleyae
ENSSLDG00000004146	srsf5a	63	80.874	ENSPSIG00000008238	-	69	78.142	Pelodiscus_sinensis
ENSSLDG00000004146	srsf5a	81	67.755	ENSPMGG00000020125	srsf5a	55	83.607	Periophthalmus_magnuspinnatus
ENSSLDG00000004146	srsf5a	81	78.039	ENSPFOG00000022993	srsf5a	79	67.460	Poecilia_formosa
ENSSLDG00000004146	srsf5a	81	77.953	ENSPLAG00000005508	srsf5a	78	67.331	Poecilia_latipinna
ENSSLDG00000004146	srsf5a	81	78.431	ENSPMEG00000016339	srsf5a	79	67.460	Poecilia_mexicana
ENSSLDG00000004146	srsf5a	90	75.768	ENSPREG00000018091	srsf5a	80	66.798	Poecilia_reticulata
ENSSLDG00000004146	srsf5a	79	91.597	ENSPNYG00000021245	srsf5a	100	88.255	Pundamilia_nyererei
ENSSLDG00000004146	srsf5a	80	79.839	ENSSFOG00015008377	srsf5	88	70.800	Scleropages_formosus
ENSSLDG00000004146	srsf5a	100	80.511	ENSSMAG00000010899	srsf5a	100	83.067	Scophthalmus_maximus
ENSSLDG00000004146	srsf5a	100	98.966	ENSSDUG00000006103	srsf5a	100	98.966	Seriola_dumerili
ENSSLDG00000004146	srsf5a	63	77.049	ENSSPUG00000002052	-	68	74.176	Sphenodon_punctatus
ENSSLDG00000004146	srsf5a	80	94.828	ENSSPAG00000002821	srsf5a	100	93.857	Stegastes_partitus
ENSSLDG00000004146	srsf5a	63	79.670	ENSTGUG00000011492	-	68	75.824	Taeniopygia_guttata
ENSSLDG00000004146	srsf5a	100	88.333	ENSTRUG00000022908	srsf5a	82	88.843	Takifugu_rubripes
ENSSLDG00000004146	srsf5a	99	62.329	ENSXETG00000017937	srsf5a	72	76.596	Xenopus_tropicalis
ENSSLDG00000004146	srsf5a	90	77.580	ENSXCOG00000015338	srsf5a	79	80.498	Xiphophorus_couchianus
ENSSLDG00000004146	srsf5a	90	75.685	ENSXMAG00000012823	srsf5a	80	67.857	Xiphophorus_maculatus