EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000004284 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 11257 bases
Position: chrPEQF01099439.1:558980-570236
Accession: 111646033
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000005409	RRM_1	PF00076.22	2e-32	1	2
ENSSLDP00000005409	RRM_1	PF00076.22	2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000005583	-	1449	XM_023395417	ENSSLDP00000005409	482 (aa)	XP_023251185	-

Gene Model

Click here to download ENSSLDG00000004284's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000004284's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000004284	pspc1	75	52.196	ENSSLDG00000012392	nono	90	51.651
ENSSLDG00000004284	pspc1	85	50.998	ENSSLDG00000018917	sfpq	64	52.315

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000004284	pspc1	81	62.037	ENSG00000121390	PSPC1	82	74.303	Homo_sapiens
ENSSLDG00000004284	pspc1	100	75.568	ENSAPOG00000015946	pspc1	100	76.864	Acanthochromis_polyacanthus
ENSSLDG00000004284	pspc1	90	58.910	ENSAMEG00000017420	PSPC1	88	64.502	Ailuropoda_melanoleuca
ENSSLDG00000004284	pspc1	100	79.604	ENSACIG00000018695	pspc1	100	78.812	Amphilophus_citrinellus
ENSSLDG00000004284	pspc1	100	75.283	ENSAOCG00000005279	pspc1	100	75.810	Amphiprion_ocellaris
ENSSLDG00000004284	pspc1	100	75.712	ENSAPEG00000015927	pspc1	100	76.245	Amphiprion_percula
ENSSLDG00000004284	pspc1	100	79.029	ENSATEG00000004878	pspc1	100	78.447	Anabas_testudineus
ENSSLDG00000004284	pspc1	66	60.790	ENSAPLG00000003643	SFPQ	50	70.543	Anas_platyrhynchos
ENSSLDG00000004284	pspc1	74	56.398	ENSAPLG00000006246	PSPC1	100	61.330	Anas_platyrhynchos
ENSSLDG00000004284	pspc1	99	54.380	ENSACAG00000002093	PSPC1	88	62.796	Anolis_carolinensis
ENSSLDG00000004284	pspc1	86	62.896	ENSANAG00000000059	PSPC1	83	70.997	Aotus_nancymaae
ENSSLDG00000004284	pspc1	100	80.361	ENSACLG00000027220	pspc1	100	78.557	Astatotilapia_calliptera
ENSSLDG00000004284	pspc1	100	59.041	ENSAMXG00000036881	pspc1	100	59.218	Astyanax_mexicanus
ENSSLDG00000004284	pspc1	100	56.144	ENSBTAG00000003934	PSPC1	88	65.419	Bos_taurus
ENSSLDG00000004284	pspc1	86	62.217	ENSCJAG00000004554	PSPC1	88	64.758	Callithrix_jacchus
ENSSLDG00000004284	pspc1	81	62.269	ENSCAFG00020002009	PSPC1	83	74.303	Canis_lupus_dingo
ENSSLDG00000004284	pspc1	100	54.982	ENSCHIG00000016708	PSPC1	88	64.286	Capra_hircus
ENSSLDG00000004284	pspc1	73	62.060	ENSTSYG00000032882	PSPC1	88	64.631	Carlito_syrichta
ENSSLDG00000004284	pspc1	81	61.806	ENSCPOG00000000395	PSPC1	83	74.303	Cavia_porcellus
ENSSLDG00000004284	pspc1	86	60.220	ENSCCAG00000033498	PSPC1	88	64.935	Cebus_capucinus
ENSSLDG00000004284	pspc1	81	61.806	ENSCATG00000036434	PSPC1	90	73.780	Cercocebus_atys
ENSSLDG00000004284	pspc1	68	60.377	ENSCLAG00000005241	PSPC1	89	63.092	Chinchilla_lanigera
ENSSLDG00000004284	pspc1	85	59.202	ENSCHOG00000008913	PSPC1	88	64.009	Choloepus_hoffmanni
ENSSLDG00000004284	pspc1	86	60.554	ENSCPBG00000020859	PSPC1	88	63.499	Chrysemys_picta_bellii
ENSSLDG00000004284	pspc1	70	64.387	ENSCANG00000018948	PSPC1	87	74.242	Colobus_angolensis_palliatus
ENSSLDG00000004284	pspc1	96	56.731	ENSCGRG00001018368	Pspc1	88	64.502	Cricetulus_griseus_chok1gshd
ENSSLDG00000004284	pspc1	96	56.731	ENSCGRG00000011724	Pspc1	88	64.502	Cricetulus_griseus_crigri
ENSSLDG00000004284	pspc1	100	70.849	ENSCVAG00000007679	-	100	71.930	Cyprinodon_variegatus
ENSSLDG00000004284	pspc1	100	55.993	ENSDARG00000006621	pspc1	100	60.199	Danio_rerio
ENSSLDG00000004284	pspc1	87	59.789	ENSDNOG00000011078	PSPC1	89	64.301	Dasypus_novemcinctus
ENSSLDG00000004284	pspc1	100	52.855	ENSDORG00000016050	Pspc1	88	61.255	Dipodomys_ordii
ENSSLDG00000004284	pspc1	91	47.741	ENSEBUG00000003964	-	78	50.740	Eptatretus_burgeri
ENSSLDG00000004284	pspc1	54	47.586	ENSEBUG00000010133	pspc1	74	47.872	Eptatretus_burgeri
ENSSLDG00000004284	pspc1	86	59.746	ENSEASG00005000119	PSPC1	83	74.303	Equus_asinus_asinus
ENSSLDG00000004284	pspc1	86	59.746	ENSECAG00000017286	PSPC1	83	74.303	Equus_caballus
ENSSLDG00000004284	pspc1	59	63.667	ENSEEUG00000011288	-	51	70.385	Erinaceus_europaeus
ENSSLDG00000004284	pspc1	100	60.478	ENSELUG00000003746	pspc1	100	61.781	Esox_lucius
ENSSLDG00000004284	pspc1	81	62.269	ENSFCAG00000027841	PSPC1	83	74.303	Felis_catus
ENSSLDG00000004284	pspc1	99	54.128	ENSFALG00000008750	PSPC1	87	63.283	Ficedula_albicollis
ENSSLDG00000004284	pspc1	80	62.383	ENSFDAG00000002617	PSPC1	90	64.502	Fukomys_damarensis
ENSSLDG00000004284	pspc1	100	58.588	ENSGMOG00000015074	pspc1	84	72.590	Gadus_morhua
ENSSLDG00000004284	pspc1	86	60.341	ENSGALG00000017142	PSPC1	88	63.283	Gallus_gallus
ENSSLDG00000004284	pspc1	82	69.734	ENSGAFG00000006327	pspc1	84	71.324	Gambusia_affinis
ENSSLDG00000004284	pspc1	100	67.510	ENSGACG00000014901	pspc1	92	78.182	Gasterosteus_aculeatus
ENSSLDG00000004284	pspc1	86	60.554	ENSGAGG00000019164	PSPC1	88	63.499	Gopherus_agassizii
ENSSLDG00000004284	pspc1	81	62.037	ENSGGOG00000003414	PSPC1	82	74.303	Gorilla_gorilla
ENSSLDG00000004284	pspc1	100	76.054	ENSHBUG00000001139	pspc1	100	76.015	Haplochromis_burtoni
ENSSLDG00000004284	pspc1	85	60.754	ENSHGLG00000018811	PSPC1	88	64.502	Heterocephalus_glaber_female
ENSSLDG00000004284	pspc1	59	75.347	ENSHGLG00100007962	PSPC1	80	80.077	Heterocephalus_glaber_male
ENSSLDG00000004284	pspc1	87	65.275	ENSHCOG00000013251	pspc1	99	66.444	Hippocampus_comes
ENSSLDG00000004284	pspc1	100	62.430	ENSIPUG00000013192	pspc1	100	63.019	Ictalurus_punctatus
ENSSLDG00000004284	pspc1	86	59.831	ENSSTOG00000026833	PSPC1	83	74.154	Ictidomys_tridecemlineatus
ENSSLDG00000004284	pspc1	81	61.663	ENSJJAG00000018334	Pspc1	88	64.286	Jaculus_jaculus
ENSSLDG00000004284	pspc1	100	66.053	ENSKMAG00000013525	-	100	63.636	Kryptolebias_marmoratus
ENSSLDG00000004284	pspc1	98	74.648	ENSLBEG00000004474	pspc1	99	72.233	Labrus_bergylta
ENSSLDG00000004284	pspc1	100	53.631	ENSLACG00000010762	PSPC1	88	61.853	Latimeria_chalumnae
ENSSLDG00000004284	pspc1	100	59.662	ENSLOCG00000010832	pspc1	99	62.571	Lepisosteus_oculatus
ENSSLDG00000004284	pspc1	81	62.269	ENSLAFG00000010968	PSPC1	88	64.719	Loxodonta_africana
ENSSLDG00000004284	pspc1	81	61.806	ENSMFAG00000032728	PSPC1	92	73.252	Macaca_fascicularis
ENSSLDG00000004284	pspc1	81	61.806	ENSMMUG00000020262	PSPC1	88	74.233	Macaca_mulatta
ENSSLDG00000004284	pspc1	81	61.806	ENSMNEG00000027401	PSPC1	88	64.502	Macaca_nemestrina
ENSSLDG00000004284	pspc1	68	59.838	ENSMLEG00000039043	PSPC1	94	63.092	Mandrillus_leucophaeus
ENSSLDG00000004284	pspc1	100	80.400	ENSMAMG00000004333	pspc1	100	79.600	Mastacembelus_armatus
ENSSLDG00000004284	pspc1	100	80.361	ENSMZEG00005005726	pspc1	100	78.557	Maylandia_zebra
ENSSLDG00000004284	pspc1	75	56.368	ENSMGAG00000015134	PSPC1	100	61.275	Meleagris_gallopavo
ENSSLDG00000004284	pspc1	85	61.959	ENSMAUG00000021067	Pspc1	85	66.752	Mesocricetus_auratus
ENSSLDG00000004284	pspc1	86	61.538	ENSMICG00000013970	PSPC1	83	74.303	Microcebus_murinus
ENSSLDG00000004284	pspc1	86	59.649	ENSMOCG00000006060	Pspc1	88	64.069	Microtus_ochrogaster
ENSSLDG00000004284	pspc1	85	96.429	ENSMMOG00000004352	pspc1	71	96.296	Mola_mola
ENSSLDG00000004284	pspc1	86	60.526	ENSMODG00000008029	PSPC1	66	67.322	Monodelphis_domestica
ENSSLDG00000004284	pspc1	100	80.202	ENSMALG00000008914	pspc1	100	78.788	Monopterus_albus
ENSSLDG00000004284	pspc1	81	61.521	MGP_CAROLIEiJ_G0019341	Pspc1	84	69.388	Mus_caroli
ENSSLDG00000004284	pspc1	81	61.521	ENSMUSG00000021938	Pspc1	86	66.500	Mus_musculus
ENSSLDG00000004284	pspc1	86	59.072	MGP_PahariEiJ_G0030359	Pspc1	84	69.388	Mus_pahari
ENSSLDG00000004284	pspc1	81	61.521	MGP_SPRETEiJ_G0020232	Pspc1	84	69.388	Mus_spretus
ENSSLDG00000004284	pspc1	81	62.269	ENSMPUG00000013347	PSPC1	88	64.502	Mustela_putorius_furo
ENSSLDG00000004284	pspc1	86	59.158	ENSMLUG00000017663	PSPC1	88	63.871	Myotis_lucifugus
ENSSLDG00000004284	pspc1	86	59.619	ENSNGAG00000011271	Pspc1	88	64.502	Nannospalax_galili
ENSSLDG00000004284	pspc1	80	84.115	ENSNBRG00000014059	pspc1	92	83.333	Neolamprologus_brichardi
ENSSLDG00000004284	pspc1	81	62.037	ENSNLEG00000001294	PSPC1	88	64.719	Nomascus_leucogenys
ENSSLDG00000004284	pspc1	86	57.759	ENSODEG00000007817	-	88	60.044	Octodon_degus
ENSSLDG00000004284	pspc1	86	58.785	ENSODEG00000019012	-	88	60.746	Octodon_degus
ENSSLDG00000004284	pspc1	100	76.864	ENSONIG00000012010	pspc1	99	76.834	Oreochromis_niloticus
ENSSLDG00000004284	pspc1	73	57.421	ENSOANG00000009017	-	100	63.092	Ornithorhynchus_anatinus
ENSSLDG00000004284	pspc1	78	55.362	ENSOANG00000011381	-	91	52.889	Ornithorhynchus_anatinus
ENSSLDG00000004284	pspc1	81	62.125	ENSOCUG00000006153	PSPC1	88	64.719	Oryctolagus_cuniculus
ENSSLDG00000004284	pspc1	100	69.305	ENSORLG00000004232	-	100	69.368	Oryzias_latipes
ENSSLDG00000004284	pspc1	100	69.472	ENSORLG00020000578	PSPC1	100	68.972	Oryzias_latipes_hni
ENSSLDG00000004284	pspc1	100	69.691	ENSORLG00015017480	pspc1	100	69.763	Oryzias_latipes_hsok
ENSSLDG00000004284	pspc1	81	62.269	ENSOGAG00000012643	PSPC1	88	64.719	Otolemur_garnettii
ENSSLDG00000004284	pspc1	85	58.723	ENSOARG00000014163	PSPC1	95	63.991	Ovis_aries
ENSSLDG00000004284	pspc1	81	62.619	ENSPPAG00000009836	PSPC1	92	73.926	Pan_paniscus
ENSSLDG00000004284	pspc1	81	62.269	ENSPPRG00000008833	PSPC1	88	64.719	Panthera_pardus
ENSSLDG00000004284	pspc1	68	60.108	ENSPTIG00000016917	PSPC1	84	63.092	Panthera_tigris_altaica
ENSSLDG00000004284	pspc1	82	61.839	ENSPTRG00000005677	PSPC1	82	74.303	Pan_troglodytes
ENSSLDG00000004284	pspc1	81	61.806	ENSPANG00000001992	PSPC1	90	73.476	Papio_anubis
ENSSLDG00000004284	pspc1	100	59.484	ENSPKIG00000003578	pspc1	100	63.931	Paramormyrops_kingsleyae
ENSSLDG00000004284	pspc1	86	57.917	ENSPSIG00000005168	PSPC1	88	62.635	Pelodiscus_sinensis
ENSSLDG00000004284	pspc1	68	71.988	ENSPMGG00000015135	pspc1	91	69.697	Periophthalmus_magnuspinnatus
ENSSLDG00000004284	pspc1	81	61.663	ENSPEMG00000015214	Pspc1	88	64.286	Peromyscus_maniculatus_bairdii
ENSSLDG00000004284	pspc1	59	41.781	ENSPMAG00000004618	pspc1	81	43.820	Petromyzon_marinus
ENSSLDG00000004284	pspc1	87	60.217	ENSPCIG00000017680	PSPC1	88	64.719	Phascolarctos_cinereus
ENSSLDG00000004284	pspc1	99	71.236	ENSPFOG00000003362	pspc1	100	70.760	Poecilia_formosa
ENSSLDG00000004284	pspc1	100	71.319	ENSPLAG00000011540	pspc1	100	70.849	Poecilia_latipinna
ENSSLDG00000004284	pspc1	100	71.128	ENSPMEG00000008322	pspc1	100	70.656	Poecilia_mexicana
ENSSLDG00000004284	pspc1	100	70.746	ENSPREG00000007786	pspc1	100	70.270	Poecilia_reticulata
ENSSLDG00000004284	pspc1	81	61.574	ENSPPYG00000005186	PSPC1	88	64.286	Pongo_abelii
ENSSLDG00000004284	pspc1	86	63.355	ENSPCOG00000014364	PSPC1	87	66.443	Propithecus_coquereli
ENSSLDG00000004284	pspc1	87	60.341	ENSPVAG00000005036	PSPC1	89	63.656	Pteropus_vampyrus
ENSSLDG00000004284	pspc1	100	80.762	ENSPNYG00000008893	pspc1	100	78.958	Pundamilia_nyererei
ENSSLDG00000004284	pspc1	100	62.689	ENSPNAG00000016511	pspc1	100	63.258	Pygocentrus_nattereri
ENSSLDG00000004284	pspc1	81	61.663	ENSRNOG00000020782	Pspc1	86	66.667	Rattus_norvegicus
ENSSLDG00000004284	pspc1	87	60.043	ENSRBIG00000036057	PSPC1	91	74.074	Rhinopithecus_bieti
ENSSLDG00000004284	pspc1	87	60.087	ENSRROG00000036334	PSPC1	82	74.303	Rhinopithecus_roxellana
ENSSLDG00000004284	pspc1	76	58.010	ENSSBOG00000028172	PSPC1	89	72.963	Saimiri_boliviensis_boliviensis
ENSSLDG00000004284	pspc1	87	63.020	ENSSHAG00000004696	PSPC1	88	64.009	Sarcophilus_harrisii
ENSSLDG00000004284	pspc1	87	66.955	ENSSFOG00015001395	pspc1	99	67.804	Scleropages_formosus
ENSSLDG00000004284	pspc1	100	74.906	ENSSMAG00000001761	pspc1	100	75.992	Scophthalmus_maximus
ENSSLDG00000004284	pspc1	100	79.633	ENSSDUG00000010651	pspc1	100	83.519	Seriola_dumerili
ENSSLDG00000004284	pspc1	81	64.019	ENSSARG00000000888	PSPC1	89	63.420	Sorex_araneus
ENSSLDG00000004284	pspc1	99	57.480	ENSSPUG00000008550	PSPC1	88	65.541	Sphenodon_punctatus
ENSSLDG00000004284	pspc1	100	74.627	ENSSPAG00000001921	pspc1	100	76.271	Stegastes_partitus
ENSSLDG00000004284	pspc1	81	62.037	ENSSSCG00000009569	PSPC1	86	72.455	Sus_scrofa
ENSSLDG00000004284	pspc1	86	60.341	ENSTGUG00000011295	PSPC1	99	63.283	Taeniopygia_guttata
ENSSLDG00000004284	pspc1	100	64.190	ENSTRUG00000011335	pspc1	100	64.341	Takifugu_rubripes
ENSSLDG00000004284	pspc1	100	64.762	ENSTNIG00000010358	pspc1	100	67.520	Tetraodon_nigroviridis
ENSSLDG00000004284	pspc1	86	52.814	ENSTBEG00000002361	PSPC1	88	54.605	Tupaia_belangeri
ENSSLDG00000004284	pspc1	82	61.731	ENSTTRG00000003343	PSPC1	90	64.179	Tursiops_truncatus
ENSSLDG00000004284	pspc1	68	68.263	ENSUAMG00000012309	PSPC1	74	80.385	Ursus_americanus
ENSSLDG00000004284	pspc1	87	59.827	ENSUMAG00000013993	PSPC1	91	73.765	Ursus_maritimus
ENSSLDG00000004284	pspc1	73	57.664	ENSVPAG00000010029	PSPC1	100	63.342	Vicugna_pacos
ENSSLDG00000004284	pspc1	81	62.269	ENSVVUG00000006414	PSPC1	84	74.383	Vulpes_vulpes
ENSSLDG00000004284	pspc1	82	70.702	ENSXCOG00000017438	pspc1	96	72.549	Xiphophorus_couchianus
ENSSLDG00000004284	pspc1	82	70.944	ENSXMAG00000007929	pspc1	96	72.794	Xiphophorus_maculatus