EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000004290 (Gene tree)
Gene ID: -
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 9548 bases
Position: chrPEQF01096758.1:30939-40486
Accession: 111650493
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000005427	DND1_DSRM	PF14709.7	3.1e-24	1	1
ENSSLDP00000005427	RRM_1	PF00076.22	1.3e-41	1	3
ENSSLDP00000005427	RRM_1	PF00076.22	1.3e-41	2	3
ENSSLDP00000005427	RRM_1	PF00076.22	1.3e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000005603	-	1722	XM_023400393	ENSSLDP00000005427	573 (aa)	XP_023256161	-

Gene Model

Click here to download ENSSLDG00000004290's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000004290's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000004290	a1cf	52	54.098	ENSSLDG00000003502	syncripl	56	53.443
ENSSLDG00000004290	a1cf	88	53.333	ENSSLDG00000003109	rbm47	78	53.254

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000004290	a1cf	100	71.405	ENSG00000148584	A1CF	100	87.129	Homo_sapiens
ENSSLDG00000004290	a1cf	92	95.312	ENSAPOG00000008259	a1cf	100	84.000	Acanthochromis_polyacanthus
ENSSLDG00000004290	a1cf	100	69.536	ENSAMEG00000000523	A1CF	100	68.977	Ailuropoda_melanoleuca
ENSSLDG00000004290	a1cf	100	83.775	ENSACIG00000008632	a1cf	100	83.775	Amphilophus_citrinellus
ENSSLDG00000004290	a1cf	100	81.167	ENSAOCG00000023744	a1cf	93	94.627	Amphiprion_ocellaris
ENSSLDG00000004290	a1cf	100	80.263	ENSAPEG00000009537	a1cf	100	80.428	Amphiprion_percula
ENSSLDG00000004290	a1cf	100	84.385	ENSATEG00000013720	a1cf	100	84.718	Anabas_testudineus
ENSSLDG00000004290	a1cf	100	69.522	ENSAPLG00000002964	A1CF	100	69.522	Anas_platyrhynchos
ENSSLDG00000004290	a1cf	100	70.569	ENSACAG00000015269	A1CF	100	70.903	Anolis_carolinensis
ENSSLDG00000004290	a1cf	100	71.739	ENSANAG00000019974	A1CF	100	70.736	Aotus_nancymaae
ENSSLDG00000004290	a1cf	100	81.833	ENSACLG00000017428	a1cf	100	81.333	Astatotilapia_calliptera
ENSSLDG00000004290	a1cf	100	70.147	ENSAMXG00000018180	a1cf	100	70.473	Astyanax_mexicanus
ENSSLDG00000004290	a1cf	100	71.237	ENSBTAG00000021195	A1CF	100	70.401	Bos_taurus
ENSSLDG00000004290	a1cf	100	70.297	ENSCJAG00000005045	A1CF	100	69.637	Callithrix_jacchus
ENSSLDG00000004290	a1cf	100	70.100	ENSCAFG00000015581	A1CF	100	68.812	Canis_familiaris
ENSSLDG00000004290	a1cf	100	70.100	ENSCAFG00020026421	A1CF	98	81.667	Canis_lupus_dingo
ENSSLDG00000004290	a1cf	100	70.297	ENSCHIG00000020411	A1CF	100	70.792	Capra_hircus
ENSSLDG00000004290	a1cf	94	71.631	ENSTSYG00000001755	A1CF	100	70.745	Carlito_syrichta
ENSSLDG00000004290	a1cf	76	72.886	ENSCAPG00000017386	A1CF	83	74.441	Cavia_aperea
ENSSLDG00000004290	a1cf	100	68.977	ENSCPOG00000009807	A1CF	100	68.317	Cavia_porcellus
ENSSLDG00000004290	a1cf	100	70.132	ENSCCAG00000018168	A1CF	100	69.472	Cebus_capucinus
ENSSLDG00000004290	a1cf	100	71.237	ENSCATG00000043715	A1CF	100	70.234	Cercocebus_atys
ENSSLDG00000004290	a1cf	100	69.193	ENSCLAG00000010424	A1CF	100	69.193	Chinchilla_lanigera
ENSSLDG00000004290	a1cf	100	70.462	ENSCSAG00000007032	A1CF	100	69.472	Chlorocebus_sabaeus
ENSSLDG00000004290	a1cf	98	68.519	ENSCHOG00000009089	A1CF	99	67.508	Choloepus_hoffmanni
ENSSLDG00000004290	a1cf	100	70.511	ENSCPBG00000026464	A1CF	100	70.181	Chrysemys_picta_bellii
ENSSLDG00000004290	a1cf	100	70.462	ENSCANG00000038032	A1CF	100	69.472	Colobus_angolensis_palliatus
ENSSLDG00000004290	a1cf	100	69.967	ENSCGRG00001017413	A1cf	100	68.977	Cricetulus_griseus_chok1gshd
ENSSLDG00000004290	a1cf	100	69.091	ENSCGRG00000017332	A1cf	100	68.430	Cricetulus_griseus_crigri
ENSSLDG00000004290	a1cf	100	82.285	ENSCSEG00000002361	a1cf	100	82.255	Cynoglossus_semilaevis
ENSSLDG00000004290	a1cf	100	84.385	ENSCVAG00000010520	a1cf	100	84.385	Cyprinodon_variegatus
ENSSLDG00000004290	a1cf	100	76.421	ENSDARG00000002968	a1cf	100	76.254	Danio_rerio
ENSSLDG00000004290	a1cf	100	69.802	ENSDNOG00000002829	A1CF	100	69.142	Dasypus_novemcinctus
ENSSLDG00000004290	a1cf	73	83.696	ENSETEG00000012527	A1CF	71	83.696	Echinops_telfairi
ENSSLDG00000004290	a1cf	100	69.852	ENSEASG00005012924	A1CF	100	70.181	Equus_asinus_asinus
ENSSLDG00000004290	a1cf	100	69.357	ENSECAG00000010424	A1CF	100	69.687	Equus_caballus
ENSSLDG00000004290	a1cf	78	60.897	ENSEEUG00000000013	A1CF	97	60.444	Erinaceus_europaeus
ENSSLDG00000004290	a1cf	100	75.410	ENSELUG00000003159	a1cf	100	75.410	Esox_lucius
ENSSLDG00000004290	a1cf	100	70.805	ENSFCAG00000011179	A1CF	100	70.067	Felis_catus
ENSSLDG00000004290	a1cf	100	71.285	ENSFALG00000013183	A1CF	100	71.119	Ficedula_albicollis
ENSSLDG00000004290	a1cf	100	70.234	ENSFDAG00000019371	A1CF	100	69.231	Fukomys_damarensis
ENSSLDG00000004290	a1cf	100	77.907	ENSFHEG00000019652	a1cf	96	90.625	Fundulus_heteroclitus
ENSSLDG00000004290	a1cf	100	74.545	ENSGMOG00000018943	a1cf	100	72.951	Gadus_morhua
ENSSLDG00000004290	a1cf	94	69.512	ENSGALG00000003765	A1CF	96	69.338	Gallus_gallus
ENSSLDG00000004290	a1cf	100	79.181	ENSGAFG00000014868	a1cf	100	79.690	Gambusia_affinis
ENSSLDG00000004290	a1cf	100	79.672	ENSGACG00000010241	a1cf	100	78.723	Gasterosteus_aculeatus
ENSSLDG00000004290	a1cf	96	69.416	ENSGAGG00000016508	A1CF	98	69.072	Gopherus_agassizii
ENSSLDG00000004290	a1cf	100	69.967	ENSGGOG00000009670	A1CF	100	69.307	Gorilla_gorilla
ENSSLDG00000004290	a1cf	100	83.775	ENSHBUG00000021959	a1cf	100	83.775	Haplochromis_burtoni
ENSSLDG00000004290	a1cf	100	69.142	ENSHGLG00000008955	A1CF	100	69.472	Heterocephalus_glaber_female
ENSSLDG00000004290	a1cf	100	68.482	ENSHGLG00100000518	A1CF	100	68.812	Heterocephalus_glaber_male
ENSSLDG00000004290	a1cf	100	68.831	ENSHCOG00000017669	a1cf	100	71.104	Hippocampus_comes
ENSSLDG00000004290	a1cf	88	77.407	ENSIPUG00000010367	a1cf	95	77.778	Ictalurus_punctatus
ENSSLDG00000004290	a1cf	100	79.512	ENSKMAG00000006568	a1cf	100	79.512	Kryptolebias_marmoratus
ENSSLDG00000004290	a1cf	99	79.869	ENSLBEG00000020994	a1cf	99	79.869	Labrus_bergylta
ENSSLDG00000004290	a1cf	100	73.244	ENSLACG00000008061	A1CF	100	71.761	Latimeria_chalumnae
ENSSLDG00000004290	a1cf	100	76.066	ENSLOCG00000006302	a1cf	100	76.066	Lepisosteus_oculatus
ENSSLDG00000004290	a1cf	100	70.462	ENSLAFG00000015462	A1CF	100	70.792	Loxodonta_africana
ENSSLDG00000004290	a1cf	100	71.405	ENSMFAG00000035948	A1CF	100	70.401	Macaca_fascicularis
ENSSLDG00000004290	a1cf	100	71.405	ENSMMUG00000007077	A1CF	100	70.401	Macaca_mulatta
ENSSLDG00000004290	a1cf	100	71.237	ENSMNEG00000031454	A1CF	100	70.234	Macaca_nemestrina
ENSSLDG00000004290	a1cf	100	70.297	ENSMLEG00000037223	A1CF	100	69.307	Mandrillus_leucophaeus
ENSSLDG00000004290	a1cf	100	82.255	ENSMAMG00000010402	a1cf	100	82.255	Mastacembelus_armatus
ENSSLDG00000004290	a1cf	100	81.469	ENSMZEG00005013245	a1cf	100	81.956	Maylandia_zebra
ENSSLDG00000004290	a1cf	100	69.408	ENSMGAG00000001507	A1CF	100	69.243	Meleagris_gallopavo
ENSSLDG00000004290	a1cf	100	69.307	ENSMAUG00000007422	A1cf	100	68.482	Mesocricetus_auratus
ENSSLDG00000004290	a1cf	100	70.500	ENSMICG00000003377	A1CF	100	71.333	Microcebus_murinus
ENSSLDG00000004290	a1cf	100	69.472	ENSMOCG00000021536	A1cf	100	69.802	Microtus_ochrogaster
ENSSLDG00000004290	a1cf	100	71.048	ENSMMOG00000009422	a1cf	100	71.833	Mola_mola
ENSSLDG00000004290	a1cf	89	73.905	ENSMODG00000016478	A1CF	97	73.905	Monodelphis_domestica
ENSSLDG00000004290	a1cf	100	83.944	ENSMALG00000012992	a1cf	100	83.944	Monopterus_albus
ENSSLDG00000004290	a1cf	100	70.401	MGP_CAROLIEiJ_G0022873	A1cf	100	69.398	Mus_caroli
ENSSLDG00000004290	a1cf	100	70.401	ENSMUSG00000052595	A1cf	99	81.667	Mus_musculus
ENSSLDG00000004290	a1cf	100	69.565	MGP_PahariEiJ_G0014366	A1cf	100	68.562	Mus_pahari
ENSSLDG00000004290	a1cf	100	70.134	MGP_SPRETEiJ_G0023792	A1cf	100	69.128	Mus_spretus
ENSSLDG00000004290	a1cf	100	64.686	ENSMPUG00000016971	A1CF	100	63.861	Mustela_putorius_furo
ENSSLDG00000004290	a1cf	100	69.256	ENSMLUG00000016071	A1CF	100	69.142	Myotis_lucifugus
ENSSLDG00000004290	a1cf	100	69.637	ENSNGAG00000015136	A1cf	100	69.802	Nannospalax_galili
ENSSLDG00000004290	a1cf	100	83.775	ENSNBRG00000001712	a1cf	100	83.775	Neolamprologus_brichardi
ENSSLDG00000004290	a1cf	100	70.462	ENSNLEG00000012028	A1CF	100	69.802	Nomascus_leucogenys
ENSSLDG00000004290	a1cf	94	70.796	ENSMEUG00000015909	A1CF	100	69.735	Notamacropus_eugenii
ENSSLDG00000004290	a1cf	88	61.538	ENSOPRG00000010667	A1CF	100	59.459	Ochotona_princeps
ENSSLDG00000004290	a1cf	100	83.609	ENSONIG00000019105	a1cf	100	83.609	Oreochromis_niloticus
ENSSLDG00000004290	a1cf	68	82.519	ENSOANG00000007360	A1CF	83	82.519	Ornithorhynchus_anatinus
ENSSLDG00000004290	a1cf	100	70.903	ENSOCUG00000011587	A1CF	100	69.900	Oryctolagus_cuniculus
ENSSLDG00000004290	a1cf	100	76.190	ENSORLG00000013342	a1cf	100	75.862	Oryzias_latipes
ENSSLDG00000004290	a1cf	100	77.362	ENSORLG00020000586	a1cf	100	77.687	Oryzias_latipes_hni
ENSSLDG00000004290	a1cf	100	76.873	ENSORLG00015018569	a1cf	100	77.362	Oryzias_latipes_hsok
ENSSLDG00000004290	a1cf	100	79.436	ENSOMEG00000013531	a1cf	100	79.436	Oryzias_melastigma
ENSSLDG00000004290	a1cf	100	69.802	ENSOGAG00000012884	A1CF	100	70.297	Otolemur_garnettii
ENSSLDG00000004290	a1cf	100	69.967	ENSOARG00000013695	A1CF	100	70.462	Ovis_aries
ENSSLDG00000004290	a1cf	95	69.565	ENSPPAG00000028115	A1CF	99	71.713	Pan_paniscus
ENSSLDG00000004290	a1cf	100	69.868	ENSPPRG00000012180	A1CF	100	70.132	Panthera_pardus
ENSSLDG00000004290	a1cf	100	69.868	ENSPTIG00000021223	A1CF	100	70.132	Panthera_tigris_altaica
ENSSLDG00000004290	a1cf	100	71.405	ENSPTRG00000002508	A1CF	100	70.401	Pan_troglodytes
ENSSLDG00000004290	a1cf	100	71.405	ENSPANG00000021988	A1CF	100	70.401	Papio_anubis
ENSSLDG00000004290	a1cf	100	74.422	ENSPKIG00000025176	a1cf	100	75.541	Paramormyrops_kingsleyae
ENSSLDG00000004290	a1cf	100	71.285	ENSPSIG00000010318	A1CF	100	70.117	Pelodiscus_sinensis
ENSSLDG00000004290	a1cf	98	72.855	ENSPMGG00000013359	a1cf	99	73.030	Periophthalmus_magnuspinnatus
ENSSLDG00000004290	a1cf	100	70.132	ENSPEMG00000015021	A1cf	100	69.802	Peromyscus_maniculatus_bairdii
ENSSLDG00000004290	a1cf	100	70.539	ENSPCIG00000002175	A1CF	100	71.212	Phascolarctos_cinereus
ENSSLDG00000004290	a1cf	100	81.922	ENSPFOG00000007437	-	100	81.759	Poecilia_formosa
ENSSLDG00000004290	a1cf	100	81.596	ENSPFOG00000006683	a1cf	100	81.270	Poecilia_formosa
ENSSLDG00000004290	a1cf	100	83.168	ENSPLAG00000000026	a1cf	100	83.168	Poecilia_latipinna
ENSSLDG00000004290	a1cf	100	83.168	ENSPLAG00000001210	-	100	83.168	Poecilia_latipinna
ENSSLDG00000004290	a1cf	100	75.833	ENSPMEG00000015529	-	100	75.083	Poecilia_mexicana
ENSSLDG00000004290	a1cf	100	76.858	ENSPMEG00000000921	a1cf	100	76.768	Poecilia_mexicana
ENSSLDG00000004290	a1cf	100	81.759	ENSPREG00000016298	a1cf	100	81.596	Poecilia_reticulata
ENSSLDG00000004290	a1cf	100	71.906	ENSPPYG00000002819	A1CF	100	70.903	Pongo_abelii
ENSSLDG00000004290	a1cf	79	53.700	ENSPCAG00000006463	A1CF	79	53.700	Procavia_capensis
ENSSLDG00000004290	a1cf	100	69.637	ENSPCOG00000024172	A1CF	100	69.967	Propithecus_coquereli
ENSSLDG00000004290	a1cf	100	83.007	ENSPNYG00000017944	a1cf	100	82.680	Pundamilia_nyererei
ENSSLDG00000004290	a1cf	100	78.477	ENSPNAG00000007704	a1cf	100	78.642	Pygocentrus_nattereri
ENSSLDG00000004290	a1cf	100	71.070	ENSRNOG00000033195	A1cf	100	70.067	Rattus_norvegicus
ENSSLDG00000004290	a1cf	100	66.167	ENSRBIG00000042892	A1CF	100	67.641	Rhinopithecus_bieti
ENSSLDG00000004290	a1cf	100	70.462	ENSRROG00000041398	A1CF	100	69.472	Rhinopithecus_roxellana
ENSSLDG00000004290	a1cf	100	70.530	ENSSBOG00000021930	A1CF	100	69.868	Saimiri_boliviensis_boliviensis
ENSSLDG00000004290	a1cf	100	71.044	ENSSHAG00000005096	A1CF	100	70.100	Sarcophilus_harrisii
ENSSLDG00000004290	a1cf	100	78.297	ENSSFOG00015011774	a1cf	100	78.464	Scleropages_formosus
ENSSLDG00000004290	a1cf	100	82.815	ENSSMAG00000013271	a1cf	100	82.815	Scophthalmus_maximus
ENSSLDG00000004290	a1cf	100	89.527	ENSSDUG00000013930	a1cf	100	89.527	Seriola_dumerili
ENSSLDG00000004290	a1cf	95	63.316	ENSSARG00000005940	A1CF	95	63.316	Sorex_araneus
ENSSLDG00000004290	a1cf	95	69.324	ENSSPUG00000006797	A1CF	95	68.977	Sphenodon_punctatus
ENSSLDG00000004290	a1cf	100	70.792	ENSSSCG00000010431	A1CF	100	71.287	Sus_scrofa
ENSSLDG00000004290	a1cf	100	70.066	ENSTGUG00000005090	A1CF	100	70.559	Taeniopygia_guttata
ENSSLDG00000004290	a1cf	100	78.339	ENSTRUG00000001982	a1cf	100	78.339	Takifugu_rubripes
ENSSLDG00000004290	a1cf	100	77.922	ENSTNIG00000003580	a1cf	100	77.922	Tetraodon_nigroviridis
ENSSLDG00000004290	a1cf	95	67.549	ENSTTRG00000013190	A1CF	94	66.667	Tursiops_truncatus
ENSSLDG00000004290	a1cf	100	71.070	ENSUAMG00000020065	A1CF	100	69.900	Ursus_americanus
ENSSLDG00000004290	a1cf	100	69.802	ENSUMAG00000011162	A1CF	100	69.802	Ursus_maritimus
ENSSLDG00000004290	a1cf	86	67.878	ENSVPAG00000006130	A1CF	86	66.730	Vicugna_pacos
ENSSLDG00000004290	a1cf	100	71.212	ENSVVUG00000002504	A1CF	100	69.900	Vulpes_vulpes
ENSSLDG00000004290	a1cf	100	65.225	ENSXETG00000006611	a1cf	100	65.058	Xenopus_tropicalis
ENSSLDG00000004290	a1cf	100	83.721	ENSXCOG00000003302	a1cf	100	83.721	Xiphophorus_couchianus
ENSSLDG00000004290	a1cf	100	82.459	ENSXMAG00000016703	a1cf	100	82.459	Xiphophorus_maculatus