EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000004499 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 42444 bases
Position: chrPEQF01099439.1:678736-721179
Accession: 111646028
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000005611	R3H	PF01424.22	1.6e-12	1	1
ENSSLDP00000005637	R3H	PF01424.22	1.6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000005803	-	4091	XM_023395401	ENSSLDP00000005611	1114 (aa)	XP_023251169	UPI000C6F47B0
ENSSLDT00000005829	-	4033	XM_023395402	ENSSLDP00000005637	1114 (aa)	XP_023251170	UPI000C6F47B0

Gene Model

Click here to download ENSSLDG00000004499's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000004499's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000004499	r3hdm1	72	60.092	ENSSLDG00000005252	r3hdm2	94	38.756

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000004499	r3hdm1	91	57.457	ENSG00000048991	R3HDM1	99	63.492	Homo_sapiens
ENSSLDG00000004499	r3hdm1	90	86.528	ENSAPOG00000020850	r3hdm1	97	86.148	Acanthochromis_polyacanthus
ENSSLDG00000004499	r3hdm1	99	47.785	ENSAMEG00000014886	R3HDM1	99	47.664	Ailuropoda_melanoleuca
ENSSLDG00000004499	r3hdm1	90	86.190	ENSAOCG00000005192	r3hdm1	100	85.905	Amphiprion_ocellaris
ENSSLDG00000004499	r3hdm1	90	85.743	ENSAPEG00000016108	r3hdm1	100	85.743	Amphiprion_percula
ENSSLDG00000004499	r3hdm1	90	85.516	ENSATEG00000000232	r3hdm1	100	85.020	Anabas_testudineus
ENSSLDG00000004499	r3hdm1	99	46.484	ENSAPLG00000015231	R3HDM1	99	46.285	Anas_platyrhynchos
ENSSLDG00000004499	r3hdm1	99	45.889	ENSACAG00000001676	R3HDM1	99	45.250	Anolis_carolinensis
ENSSLDG00000004499	r3hdm1	91	57.702	ENSANAG00000035334	R3HDM1	92	69.551	Aotus_nancymaae
ENSSLDG00000004499	r3hdm1	90	85.458	ENSACLG00000027282	r3hdm1	100	84.462	Astatotilapia_calliptera
ENSSLDG00000004499	r3hdm1	91	65.133	ENSAMXG00000012861	R3HDM1	99	64.407	Astyanax_mexicanus
ENSSLDG00000004499	r3hdm1	94	50.821	ENSAMXG00000003536	r3hdm1	94	49.215	Astyanax_mexicanus
ENSSLDG00000004499	r3hdm1	99	46.245	ENSBTAG00000013302	R3HDM1	99	46.218	Bos_taurus
ENSSLDG00000004499	r3hdm1	91	57.457	ENSCJAG00000011718	R3HDM1	92	69.551	Callithrix_jacchus
ENSSLDG00000004499	r3hdm1	99	47.698	ENSCAFG00000005075	R3HDM1	99	47.500	Canis_familiaris
ENSSLDG00000004499	r3hdm1	99	47.698	ENSCAFG00020016119	R3HDM1	92	58.349	Canis_lupus_dingo
ENSSLDG00000004499	r3hdm1	99	47.263	ENSCHIG00000020851	R3HDM1	99	47.318	Capra_hircus
ENSSLDG00000004499	r3hdm1	99	45.823	ENSCPOG00000012784	R3HDM1	100	60.667	Cavia_porcellus
ENSSLDG00000004499	r3hdm1	83	69.231	ENSCCAG00000027199	R3HDM1	92	69.231	Cebus_capucinus
ENSSLDG00000004499	r3hdm1	96	59.160	ENSCATG00000023642	R3HDM1	92	69.231	Cercocebus_atys
ENSSLDG00000004499	r3hdm1	99	45.847	ENSCLAG00000007962	R3HDM1	100	62.667	Chinchilla_lanigera
ENSSLDG00000004499	r3hdm1	99	46.154	ENSCSAG00000016356	R3HDM1	99	46.037	Chlorocebus_sabaeus
ENSSLDG00000004499	r3hdm1	78	65.649	ENSCHOG00000013638	R3HDM1	79	65.649	Choloepus_hoffmanni
ENSSLDG00000004499	r3hdm1	80	70.397	ENSCPBG00000009645	R3HDM1	99	47.530	Chrysemys_picta_bellii
ENSSLDG00000004499	r3hdm1	83	69.231	ENSCANG00000034748	R3HDM1	92	69.231	Colobus_angolensis_palliatus
ENSSLDG00000004499	r3hdm1	99	45.409	ENSCGRG00001012357	R3hdm1	96	45.585	Cricetulus_griseus_chok1gshd
ENSSLDG00000004499	r3hdm1	99	46.574	ENSCGRG00000012080	R3hdm1	100	63.333	Cricetulus_griseus_crigri
ENSSLDG00000004499	r3hdm1	90	73.140	ENSCSEG00000008944	r3hdm1	100	74.035	Cynoglossus_semilaevis
ENSSLDG00000004499	r3hdm1	90	81.592	ENSCVAG00000007582	r3hdm1	100	81.095	Cyprinodon_variegatus
ENSSLDG00000004499	r3hdm1	99	45.682	ENSDNOG00000000771	R3HDM1	99	45.736	Dasypus_novemcinctus
ENSSLDG00000004499	r3hdm1	99	42.636	ENSETEG00000013606	R3HDM1	99	43.426	Echinops_telfairi
ENSSLDG00000004499	r3hdm1	99	47.437	ENSEASG00005007392	R3HDM1	99	47.405	Equus_asinus_asinus
ENSSLDG00000004499	r3hdm1	91	61.098	ENSECAG00000019114	R3HDM1	99	61.575	Equus_caballus
ENSSLDG00000004499	r3hdm1	70	53.728	ENSEEUG00000012589	R3HDM1	71	52.581	Erinaceus_europaeus
ENSSLDG00000004499	r3hdm1	93	47.922	ENSELUG00000004909	R3HDM1	98	48.206	Esox_lucius
ENSSLDG00000004499	r3hdm1	88	50.142	ENSELUG00000014413	r3hdm1	96	50.859	Esox_lucius
ENSSLDG00000004499	r3hdm1	99	47.524	ENSFCAG00000027113	R3HDM1	99	47.405	Felis_catus
ENSSLDG00000004499	r3hdm1	75	48.230	ENSFALG00000013731	R3HDM1	93	43.243	Ficedula_albicollis
ENSSLDG00000004499	r3hdm1	99	46.537	ENSFDAG00000016478	R3HDM1	100	64.000	Fukomys_damarensis
ENSSLDG00000004499	r3hdm1	90	78.489	ENSFHEG00000018713	r3hdm1	100	77.916	Fundulus_heteroclitus
ENSSLDG00000004499	r3hdm1	58	60.510	ENSGMOG00000006042	-	81	54.355	Gadus_morhua
ENSSLDG00000004499	r3hdm1	91	57.457	ENSGALG00000012246	R3HDM1	98	65.049	Gallus_gallus
ENSSLDG00000004499	r3hdm1	90	76.587	ENSGAFG00000006203	r3hdm1	100	76.862	Gambusia_affinis
ENSSLDG00000004499	r3hdm1	89	79.426	ENSGACG00000014925	r3hdm1	100	79.426	Gasterosteus_aculeatus
ENSSLDG00000004499	r3hdm1	90	60.976	ENSGAGG00000007840	R3HDM1	99	46.620	Gopherus_agassizii
ENSSLDG00000004499	r3hdm1	91	57.457	ENSGGOG00000008156	R3HDM1	92	69.231	Gorilla_gorilla
ENSSLDG00000004499	r3hdm1	99	46.387	ENSHGLG00000015718	R3HDM1	100	63.333	Heterocephalus_glaber_female
ENSSLDG00000004499	r3hdm1	90	39.379	ENSHGLG00100015374	-	96	39.400	Heterocephalus_glaber_male
ENSSLDG00000004499	r3hdm1	99	46.303	ENSHGLG00100003184	-	100	63.667	Heterocephalus_glaber_male
ENSSLDG00000004499	r3hdm1	90	68.948	ENSHCOG00000013366	r3hdm1	100	68.849	Hippocampus_comes
ENSSLDG00000004499	r3hdm1	68	71.242	ENSIPUG00000013629	r3hdm1	93	70.261	Ictalurus_punctatus
ENSSLDG00000004499	r3hdm1	82	54.634	ENSIPUG00000001676	R3HDM1	96	50.861	Ictalurus_punctatus
ENSSLDG00000004499	r3hdm1	99	47.694	ENSSTOG00000007572	R3HDM1	100	64.000	Ictidomys_tridecemlineatus
ENSSLDG00000004499	r3hdm1	94	48.802	ENSLACG00000005334	R3HDM1	98	48.316	Latimeria_chalumnae
ENSSLDG00000004499	r3hdm1	99	50.789	ENSLOCG00000001641	r3hdm1	99	51.045	Lepisosteus_oculatus
ENSSLDG00000004499	r3hdm1	99	46.199	ENSLAFG00000009065	R3HDM1	99	46.044	Loxodonta_africana
ENSSLDG00000004499	r3hdm1	91	61.337	ENSMFAG00000030331	R3HDM1	92	69.231	Macaca_fascicularis
ENSSLDG00000004499	r3hdm1	91	57.457	ENSMMUG00000009844	R3HDM1	92	69.231	Macaca_mulatta
ENSSLDG00000004499	r3hdm1	91	61.337	ENSMNEG00000027793	R3HDM1	92	69.231	Macaca_nemestrina
ENSSLDG00000004499	r3hdm1	91	57.457	ENSMLEG00000043189	R3HDM1	92	69.231	Mandrillus_leucophaeus
ENSSLDG00000004499	r3hdm1	90	87.761	ENSMAMG00000004532	r3hdm1	100	87.363	Mastacembelus_armatus
ENSSLDG00000004499	r3hdm1	90	89.044	ENSMZEG00005003157	r3hdm1	100	88.048	Maylandia_zebra
ENSSLDG00000004499	r3hdm1	99	46.564	ENSMGAG00000012461	R3HDM1	99	46.524	Meleagris_gallopavo
ENSSLDG00000004499	r3hdm1	99	45.998	ENSMAUG00000010315	R3hdm1	100	63.333	Mesocricetus_auratus
ENSSLDG00000004499	r3hdm1	91	57.946	ENSMICG00000005900	-	92	69.231	Microcebus_murinus
ENSSLDG00000004499	r3hdm1	87	57.702	ENSMICG00000042655	-	90	68.910	Microcebus_murinus
ENSSLDG00000004499	r3hdm1	93	44.670	ENSMODG00000000923	R3HDM1	98	44.464	Monodelphis_domestica
ENSSLDG00000004499	r3hdm1	100	85.919	ENSMALG00000009000	r3hdm1	100	85.740	Monopterus_albus
ENSSLDG00000004499	r3hdm1	99	45.447	MGP_CAROLIEiJ_G0014543	R3hdm1	100	63.333	Mus_caroli
ENSSLDG00000004499	r3hdm1	99	45.196	ENSMUSG00000056211	R3hdm1	100	63.333	Mus_musculus
ENSSLDG00000004499	r3hdm1	99	45.029	MGP_PahariEiJ_G0027779	R3hdm1	100	63.333	Mus_pahari
ENSSLDG00000004499	r3hdm1	99	45.363	MGP_SPRETEiJ_G0015350	R3hdm1	100	63.333	Mus_spretus
ENSSLDG00000004499	r3hdm1	99	47.524	ENSMPUG00000002412	R3HDM1	99	47.491	Mustela_putorius_furo
ENSSLDG00000004499	r3hdm1	99	47.054	ENSMLUG00000013824	R3HDM1	99	46.978	Myotis_lucifugus
ENSSLDG00000004499	r3hdm1	91	57.457	ENSNLEG00000008622	R3HDM1	92	69.231	Nomascus_leucogenys
ENSSLDG00000004499	r3hdm1	85	43.094	ENSMEUG00000011784	R3HDM1	93	43.172	Notamacropus_eugenii
ENSSLDG00000004499	r3hdm1	99	45.232	ENSODEG00000008607	R3HDM1	100	63.333	Octodon_degus
ENSSLDG00000004499	r3hdm1	94	86.140	ENSONIG00000012017	r3hdm1	99	85.860	Oreochromis_niloticus
ENSSLDG00000004499	r3hdm1	99	45.494	ENSOANG00000007987	R3HDM1	99	45.641	Ornithorhynchus_anatinus
ENSSLDG00000004499	r3hdm1	90	48.851	ENSOCUG00000017366	R3HDM1	98	48.855	Oryctolagus_cuniculus
ENSSLDG00000004499	r3hdm1	90	73.180	ENSORLG00000004297	r3hdm1	100	73.180	Oryzias_latipes
ENSSLDG00000004499	r3hdm1	90	75.447	ENSORLG00015017355	r3hdm1	100	75.746	Oryzias_latipes_hsok
ENSSLDG00000004499	r3hdm1	99	47.781	ENSOGAG00000003136	R3HDM1	99	47.743	Otolemur_garnettii
ENSSLDG00000004499	r3hdm1	99	47.524	ENSOARG00000010788	R3HDM1	99	47.405	Ovis_aries
ENSSLDG00000004499	r3hdm1	91	57.457	ENSPPAG00000027858	R3HDM1	92	69.231	Pan_paniscus
ENSSLDG00000004499	r3hdm1	91	56.968	ENSPPRG00000002626	R3HDM1	92	68.590	Panthera_pardus
ENSSLDG00000004499	r3hdm1	91	57.213	ENSPTIG00000016581	R3HDM1	92	68.910	Panthera_tigris_altaica
ENSSLDG00000004499	r3hdm1	91	57.457	ENSPTRG00000012494	R3HDM1	92	69.231	Pan_troglodytes
ENSSLDG00000004499	r3hdm1	91	57.457	ENSPANG00000026448	R3HDM1	92	69.231	Papio_anubis
ENSSLDG00000004499	r3hdm1	82	74.013	ENSPKIG00000004328	r3hdm1	89	73.026	Paramormyrops_kingsleyae
ENSSLDG00000004499	r3hdm1	99	46.194	ENSPSIG00000012915	R3HDM1	99	46.580	Pelodiscus_sinensis
ENSSLDG00000004499	r3hdm1	99	45.690	ENSPEMG00000015187	R3hdm1	100	63.333	Peromyscus_maniculatus_bairdii
ENSSLDG00000004499	r3hdm1	50	47.700	ENSPMAG00000003369	-	99	39.797	Petromyzon_marinus
ENSSLDG00000004499	r3hdm1	91	60.190	ENSPCIG00000002491	R3HDM1	99	45.962	Phascolarctos_cinereus
ENSSLDG00000004499	r3hdm1	90	76.828	ENSPFOG00000015036	r3hdm1	100	76.594	Poecilia_formosa
ENSSLDG00000004499	r3hdm1	90	76.634	ENSPLAG00000018042	r3hdm1	100	76.389	Poecilia_latipinna
ENSSLDG00000004499	r3hdm1	90	76.459	ENSPMEG00000023947	r3hdm1	100	76.214	Poecilia_mexicana
ENSSLDG00000004499	r3hdm1	90	80.338	ENSPREG00000007902	r3hdm1	100	80.020	Poecilia_reticulata
ENSSLDG00000004499	r3hdm1	99	46.447	ENSPPYG00000012815	R3HDM1	99	46.753	Pongo_abelii
ENSSLDG00000004499	r3hdm1	86	58.929	ENSPCAG00000006208	R3HDM1	87	59.050	Procavia_capensis
ENSSLDG00000004499	r3hdm1	83	63.363	ENSPCOG00000012698	R3HDM1	97	63.363	Propithecus_coquereli
ENSSLDG00000004499	r3hdm1	99	42.398	ENSPVAG00000006098	R3HDM1	99	42.114	Pteropus_vampyrus
ENSSLDG00000004499	r3hdm1	97	49.866	ENSPNAG00000013952	r3hdm1	92	51.601	Pygocentrus_nattereri
ENSSLDG00000004499	r3hdm1	84	71.203	ENSPNAG00000005436	R3HDM1	98	71.895	Pygocentrus_nattereri
ENSSLDG00000004499	r3hdm1	99	45.356	ENSRNOG00000004099	R3hdm1	99	45.562	Rattus_norvegicus
ENSSLDG00000004499	r3hdm1	80	72.202	ENSRBIG00000033317	R3HDM1	99	72.202	Rhinopithecus_bieti
ENSSLDG00000004499	r3hdm1	91	57.457	ENSRROG00000034534	R3HDM1	92	69.231	Rhinopithecus_roxellana
ENSSLDG00000004499	r3hdm1	91	57.946	ENSSBOG00000020389	R3HDM1	92	69.551	Saimiri_boliviensis_boliviensis
ENSSLDG00000004499	r3hdm1	99	46.500	ENSSHAG00000016999	R3HDM1	99	46.459	Sarcophilus_harrisii
ENSSLDG00000004499	r3hdm1	91	65.610	ENSSFOG00015014134	r3hdm1	99	64.878	Scleropages_formosus
ENSSLDG00000004499	r3hdm1	99	48.384	ENSSFOG00015019851	-	92	61.319	Scleropages_formosus
ENSSLDG00000004499	r3hdm1	100	84.907	ENSSMAG00000001669	r3hdm1	100	84.731	Scophthalmus_maximus
ENSSLDG00000004499	r3hdm1	90	97.730	ENSSDUG00000010749	r3hdm1	100	97.730	Seriola_dumerili
ENSSLDG00000004499	r3hdm1	59	53.420	ENSSARG00000000352	-	62	53.746	Sorex_araneus
ENSSLDG00000004499	r3hdm1	99	46.193	ENSSPUG00000004167	R3HDM1	99	47.186	Sphenodon_punctatus
ENSSLDG00000004499	r3hdm1	90	90.730	ENSSPAG00000004648	r3hdm1	100	90.730	Stegastes_partitus
ENSSLDG00000004499	r3hdm1	99	47.815	ENSSSCG00000015692	R3HDM1	92	65.372	Sus_scrofa
ENSSLDG00000004499	r3hdm1	99	47.400	ENSTGUG00000011750	R3HDM1	99	47.301	Taeniopygia_guttata
ENSSLDG00000004499	r3hdm1	90	76.877	ENSTRUG00000011654	r3hdm1	99	76.482	Takifugu_rubripes
ENSSLDG00000004499	r3hdm1	88	73.300	ENSTNIG00000010362	r3hdm1	99	73.400	Tetraodon_nigroviridis
ENSSLDG00000004499	r3hdm1	93	48.230	ENSTTRG00000003935	R3HDM1	83	51.621	Tursiops_truncatus
ENSSLDG00000004499	r3hdm1	71	51.582	ENSUAMG00000024806	R3HDM1	84	68.910	Ursus_americanus
ENSSLDG00000004499	r3hdm1	91	57.213	ENSUMAG00000005552	R3HDM1	92	68.910	Ursus_maritimus
ENSSLDG00000004499	r3hdm1	88	46.199	ENSVPAG00000007333	R3HDM1	87	45.517	Vicugna_pacos
ENSSLDG00000004499	r3hdm1	99	46.706	ENSVVUG00000006457	R3HDM1	99	46.296	Vulpes_vulpes
ENSSLDG00000004499	r3hdm1	90	43.503	ENSXETG00000019330	r3hdm1	92	45.885	Xenopus_tropicalis
ENSSLDG00000004499	r3hdm1	68	75.558	ENSXCOG00000017448	r3hdm1	93	75.953	Xiphophorus_couchianus
ENSSLDG00000004499	r3hdm1	90	76.168	ENSXMAG00000007885	r3hdm1	100	76.454	Xiphophorus_maculatus