EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000004623 (Gene tree)
Gene ID: -
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 60883 bases
Position: chrPEQF01098723.1:93793-154675
Accession: 111653755
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000005848	ResIII	PF04851.15	6e-07	1	1
ENSSLDP00000005810	ResIII	PF04851.15	6.4e-07	1	1
ENSSLDP00000005770	ResIII	PF04851.15	6.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000006047	-	8451	XM_023404432	ENSSLDP00000005848	1547 (aa)	XP_023260200	-
ENSSLDT00000006009	-	8596	XM_023404431	ENSSLDP00000005810	1606 (aa)	XP_023260199	UPI000C6F4C35
ENSSLDT00000005968	-	8680	XM_023404429	ENSSLDP00000005770	1634 (aa)	XP_023260197	UPI000C6F8375

Gene Model

Click here to download ENSSLDG00000004623's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000004623's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000004623	si:ch73-63e15.2	63	63.765	ENSSLDG00000007928	sbno1	73	63.765

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000004623	si:ch73-63e15.2	74	68.466	ENSG00000064932	SBNO2	88	68.579	Homo_sapiens
ENSSLDG00000004623	si:ch73-63e15.2	100	88.393	ENSAPOG00000003185	si:ch73-63e15.2	100	88.645	Acanthochromis_polyacanthus
ENSSLDG00000004623	si:ch73-63e15.2	100	88.469	ENSAOCG00000016581	si:ch73-63e15.2	100	88.347	Amphiprion_ocellaris
ENSSLDG00000004623	si:ch73-63e15.2	100	88.408	ENSAPEG00000008862	si:ch73-63e15.2	100	88.286	Amphiprion_percula
ENSSLDG00000004623	si:ch73-63e15.2	100	85.409	ENSATEG00000023838	si:ch73-63e15.2	99	88.431	Anabas_testudineus
ENSSLDG00000004623	si:ch73-63e15.2	73	72.444	ENSAPLG00000007158	SBNO2	89	72.270	Anas_platyrhynchos
ENSSLDG00000004623	si:ch73-63e15.2	74	67.952	ENSANAG00000026685	SBNO2	89	67.808	Aotus_nancymaae
ENSSLDG00000004623	si:ch73-63e15.2	100	80.293	ENSACLG00000005090	si:ch73-63e15.2	100	80.232	Astatotilapia_calliptera
ENSSLDG00000004623	si:ch73-63e15.2	76	81.362	ENSAMXG00000015881	si:ch73-63e15.2	85	81.362	Astyanax_mexicanus
ENSSLDG00000004623	si:ch73-63e15.2	75	79.540	ENSAMXG00000018868	sbno2a	96	80.849	Astyanax_mexicanus
ENSSLDG00000004623	si:ch73-63e15.2	74	69.733	ENSBTAG00000020780	SBNO2	88	69.435	Bos_taurus
ENSSLDG00000004623	si:ch73-63e15.2	73	70.174	ENSCAFG00000019543	SBNO2	84	70.069	Canis_familiaris
ENSSLDG00000004623	si:ch73-63e15.2	73	70.174	ENSCAFG00020017115	SBNO2	89	70.069	Canis_lupus_dingo
ENSSLDG00000004623	si:ch73-63e15.2	73	70.113	ENSCHIG00000026127	SBNO2	86	69.878	Capra_hircus
ENSSLDG00000004623	si:ch73-63e15.2	72	67.657	ENSCAPG00000005731	SBNO2	94	67.480	Cavia_aperea
ENSSLDG00000004623	si:ch73-63e15.2	73	67.535	ENSCPOG00000007477	SBNO2	86	67.386	Cavia_porcellus
ENSSLDG00000004623	si:ch73-63e15.2	74	68.038	ENSCCAG00000037518	SBNO2	89	67.894	Cebus_capucinus
ENSSLDG00000004623	si:ch73-63e15.2	74	68.750	ENSCATG00000037046	SBNO2	88	68.750	Cercocebus_atys
ENSSLDG00000004623	si:ch73-63e15.2	74	68.788	ENSCLAG00000010178	SBNO2	99	69.264	Chinchilla_lanigera
ENSSLDG00000004623	si:ch73-63e15.2	73	69.191	ENSCSAG00000012317	SBNO2	85	68.263	Chlorocebus_sabaeus
ENSSLDG00000004623	si:ch73-63e15.2	74	70.294	ENSCPBG00000008920	SBNO2	79	83.372	Chrysemys_picta_bellii
ENSSLDG00000004623	si:ch73-63e15.2	71	68.454	ENSCANG00000036745	SBNO2	96	68.454	Colobus_angolensis_palliatus
ENSSLDG00000004623	si:ch73-63e15.2	73	68.233	ENSCGRG00001023960	Sbno2	85	67.938	Cricetulus_griseus_chok1gshd
ENSSLDG00000004623	si:ch73-63e15.2	73	69.565	ENSCGRG00000011984	Sbno2	85	69.264	Cricetulus_griseus_crigri
ENSSLDG00000004623	si:ch73-63e15.2	76	89.301	ENSCSEG00000006856	si:ch73-63e15.2	97	91.478	Cynoglossus_semilaevis
ENSSLDG00000004623	si:ch73-63e15.2	100	77.197	ENSCVAG00000005663	si:ch73-63e15.2	100	77.565	Cyprinodon_variegatus
ENSSLDG00000004623	si:ch73-63e15.2	77	79.817	ENSDARG00000016188	SBNO2	86	79.950	Danio_rerio
ENSSLDG00000004623	si:ch73-63e15.2	78	75.975	ENSDARG00000098801	sbno2a	93	76.365	Danio_rerio
ENSSLDG00000004623	si:ch73-63e15.2	73	69.365	ENSDORG00000002916	Sbno2	89	67.407	Dipodomys_ordii
ENSSLDG00000004623	si:ch73-63e15.2	74	69.125	ENSEASG00005021621	SBNO2	89	69.323	Equus_asinus_asinus
ENSSLDG00000004623	si:ch73-63e15.2	74	69.211	ENSECAG00000011827	SBNO2	89	69.409	Equus_caballus
ENSSLDG00000004623	si:ch73-63e15.2	91	86.798	ENSELUG00000020457	si:ch73-63e15.2	99	72.645	Esox_lucius
ENSSLDG00000004623	si:ch73-63e15.2	74	72.213	ENSFALG00000013988	SBNO2	92	68.146	Ficedula_albicollis
ENSSLDG00000004623	si:ch73-63e15.2	72	66.931	ENSFDAG00000015186	SBNO2	87	66.580	Fukomys_damarensis
ENSSLDG00000004623	si:ch73-63e15.2	100	79.607	ENSFHEG00000022262	si:ch73-63e15.2	100	79.037	Fundulus_heteroclitus
ENSSLDG00000004623	si:ch73-63e15.2	74	88.714	ENSGMOG00000007542	si:ch73-63e15.2	96	88.714	Gadus_morhua
ENSSLDG00000004623	si:ch73-63e15.2	75	72.091	ENSGALG00000037522	SBNO2	86	71.838	Gallus_gallus
ENSSLDG00000004623	si:ch73-63e15.2	77	89.320	ENSGAFG00000004860	si:ch73-63e15.2	93	90.144	Gambusia_affinis
ENSSLDG00000004623	si:ch73-63e15.2	73	92.254	ENSGACG00000013190	si:ch73-63e15.2	95	92.254	Gasterosteus_aculeatus
ENSSLDG00000004623	si:ch73-63e15.2	86	65.588	ENSGAGG00000008348	SBNO2	95	65.702	Gopherus_agassizii
ENSSLDG00000004623	si:ch73-63e15.2	99	81.332	ENSHBUG00000010742	si:ch73-63e15.2	100	80.159	Haplochromis_burtoni
ENSSLDG00000004623	si:ch73-63e15.2	73	69.251	ENSHGLG00000008739	SBNO2	85	68.912	Heterocephalus_glaber_female
ENSSLDG00000004623	si:ch73-63e15.2	74	68.606	ENSHGLG00100005269	SBNO2	99	69.050	Heterocephalus_glaber_male
ENSSLDG00000004623	si:ch73-63e15.2	78	88.446	ENSHCOG00000000884	si:ch73-63e15.2	96	86.006	Hippocampus_comes
ENSSLDG00000004623	si:ch73-63e15.2	74	81.109	ENSIPUG00000019672	sbno2	99	77.124	Ictalurus_punctatus
ENSSLDG00000004623	si:ch73-63e15.2	74	80.676	ENSIPUG00000000537	si:ch73-63e15.2	86	79.695	Ictalurus_punctatus
ENSSLDG00000004623	si:ch73-63e15.2	73	69.800	ENSSTOG00000025832	SBNO2	90	66.426	Ictidomys_tridecemlineatus
ENSSLDG00000004623	si:ch73-63e15.2	74	65.950	ENSJJAG00000017397	Sbno2	91	63.025	Jaculus_jaculus
ENSSLDG00000004623	si:ch73-63e15.2	100	81.484	ENSKMAG00000005541	si:ch73-63e15.2	100	79.563	Kryptolebias_marmoratus
ENSSLDG00000004623	si:ch73-63e15.2	100	86.492	ENSLBEG00000025016	si:ch73-63e15.2	99	91.570	Labrus_bergylta
ENSSLDG00000004623	si:ch73-63e15.2	74	85.851	ENSLOCG00000004643	si:ch73-63e15.2	85	85.851	Lepisosteus_oculatus
ENSSLDG00000004623	si:ch73-63e15.2	72	65.785	ENSLAFG00000008824	SBNO2	89	65.727	Loxodonta_africana
ENSSLDG00000004623	si:ch73-63e15.2	74	67.066	ENSMFAG00000040030	SBNO2	90	67.066	Macaca_fascicularis
ENSSLDG00000004623	si:ch73-63e15.2	73	69.191	ENSMMUG00000010886	SBNO2	87	67.652	Macaca_mulatta
ENSSLDG00000004623	si:ch73-63e15.2	74	68.750	ENSMNEG00000039927	SBNO2	88	68.750	Macaca_nemestrina
ENSSLDG00000004623	si:ch73-63e15.2	67	69.783	ENSMLEG00000038556	SBNO2	91	69.700	Mandrillus_leucophaeus
ENSSLDG00000004623	si:ch73-63e15.2	100	86.800	ENSMAMG00000018758	si:ch73-63e15.2	100	86.671	Mastacembelus_armatus
ENSSLDG00000004623	si:ch73-63e15.2	100	80.342	ENSMZEG00005010682	si:ch73-63e15.2	100	80.220	Maylandia_zebra
ENSSLDG00000004623	si:ch73-63e15.2	74	72.464	ENSMGAG00000003801	SBNO2	90	72.563	Meleagris_gallopavo
ENSSLDG00000004623	si:ch73-63e15.2	73	69.626	ENSMAUG00000008034	Sbno2	88	67.298	Mesocricetus_auratus
ENSSLDG00000004623	si:ch73-63e15.2	74	68.268	ENSMICG00000013071	SBNO2	88	68.576	Microcebus_murinus
ENSSLDG00000004623	si:ch73-63e15.2	73	69.974	ENSMOCG00000010504	Sbno2	85	69.610	Microtus_ochrogaster
ENSSLDG00000004623	si:ch73-63e15.2	73	71.552	ENSMODG00000005382	SBNO2	89	67.673	Monodelphis_domestica
ENSSLDG00000004623	si:ch73-63e15.2	62	84.984	ENSMALG00000021831	si:ch73-63e15.2	99	84.984	Monopterus_albus
ENSSLDG00000004623	si:ch73-63e15.2	73	69.043	ENSMUSG00000035673	Sbno2	97	66.612	Mus_musculus
ENSSLDG00000004623	si:ch73-63e15.2	73	69.278	MGP_PahariEiJ_G0030976	Sbno2	85	69.151	Mus_pahari
ENSSLDG00000004623	si:ch73-63e15.2	73	69.278	MGP_SPRETEiJ_G0016381	Sbno2	94	66.612	Mus_spretus
ENSSLDG00000004623	si:ch73-63e15.2	63	71.992	ENSMPUG00000008747	SBNO2	99	67.399	Mustela_putorius_furo
ENSSLDG00000004623	si:ch73-63e15.2	73	69.191	ENSNGAG00000004308	Sbno2	86	69.017	Nannospalax_galili
ENSSLDG00000004623	si:ch73-63e15.2	80	90.328	ENSNBRG00000022968	si:ch73-63e15.2	99	90.994	Neolamprologus_brichardi
ENSSLDG00000004623	si:ch73-63e15.2	70	70.213	ENSNLEG00000001305	SBNO2	89	70.213	Nomascus_leucogenys
ENSSLDG00000004623	si:ch73-63e15.2	60	67.197	ENSMEUG00000013511	-	78	66.879	Notamacropus_eugenii
ENSSLDG00000004623	si:ch73-63e15.2	73	68.499	ENSOPRG00000017238	SBNO2	94	68.899	Ochotona_princeps
ENSSLDG00000004623	si:ch73-63e15.2	73	68.202	ENSODEG00000011822	SBNO2	86	67.873	Octodon_degus
ENSSLDG00000004623	si:ch73-63e15.2	100	81.343	ENSONIG00000002490	si:ch73-63e15.2	99	89.346	Oreochromis_niloticus
ENSSLDG00000004623	si:ch73-63e15.2	100	77.728	ENSORLG00000000913	si:ch73-63e15.2	100	77.101	Oryzias_latipes
ENSSLDG00000004623	si:ch73-63e15.2	100	77.664	ENSORLG00020010978	si:ch73-63e15.2	100	77.101	Oryzias_latipes_hni
ENSSLDG00000004623	si:ch73-63e15.2	100	77.535	ENSORLG00015000202	si:ch73-63e15.2	100	76.972	Oryzias_latipes_hsok
ENSSLDG00000004623	si:ch73-63e15.2	73	67.333	ENSOARG00000011130	SBNO2	86	67.128	Ovis_aries
ENSSLDG00000004623	si:ch73-63e15.2	74	67.545	ENSPPAG00000032482	SBNO2	90	67.657	Pan_paniscus
ENSSLDG00000004623	si:ch73-63e15.2	74	68.466	ENSPTRG00000010185	SBNO2	89	68.520	Pan_troglodytes
ENSSLDG00000004623	si:ch73-63e15.2	74	65.240	ENSPANG00000009658	SBNO2	88	64.983	Papio_anubis
ENSSLDG00000004623	si:ch73-63e15.2	65	79.902	ENSPKIG00000009707	-	89	75.954	Paramormyrops_kingsleyae
ENSSLDG00000004623	si:ch73-63e15.2	74	84.689	ENSPKIG00000024201	si:ch73-63e15.2	88	81.399	Paramormyrops_kingsleyae
ENSSLDG00000004623	si:ch73-63e15.2	62	73.984	ENSPSIG00000002852	SBNO2	99	73.882	Pelodiscus_sinensis
ENSSLDG00000004623	si:ch73-63e15.2	77	86.035	ENSPMGG00000014375	si:ch73-63e15.2	95	84.871	Periophthalmus_magnuspinnatus
ENSSLDG00000004623	si:ch73-63e15.2	73	67.454	ENSPEMG00000024122	Sbno2	85	67.603	Peromyscus_maniculatus_bairdii
ENSSLDG00000004623	si:ch73-63e15.2	73	71.082	ENSPCIG00000011264	SBNO2	89	68.400	Phascolarctos_cinereus
ENSSLDG00000004623	si:ch73-63e15.2	100	77.663	ENSPFOG00000004096	si:ch73-63e15.2	100	87.801	Poecilia_formosa
ENSSLDG00000004623	si:ch73-63e15.2	100	77.955	ENSPLAG00000014653	si:ch73-63e15.2	100	77.636	Poecilia_latipinna
ENSSLDG00000004623	si:ch73-63e15.2	100	77.565	ENSPMEG00000002129	si:ch73-63e15.2	96	84.563	Poecilia_mexicana
ENSSLDG00000004623	si:ch73-63e15.2	100	77.509	ENSPREG00000006755	si:ch73-63e15.2	100	77.240	Poecilia_reticulata
ENSSLDG00000004623	si:ch73-63e15.2	68	68.622	ENSPCAG00000012256	SBNO2	79	68.343	Procavia_capensis
ENSSLDG00000004623	si:ch73-63e15.2	74	62.190	ENSPCOG00000015216	SBNO2	90	60.240	Propithecus_coquereli
ENSSLDG00000004623	si:ch73-63e15.2	100	81.496	ENSPNYG00000019926	si:ch73-63e15.2	99	81.431	Pundamilia_nyererei
ENSSLDG00000004623	si:ch73-63e15.2	75	79.625	ENSPNAG00000026609	sbno2a	99	70.406	Pygocentrus_nattereri
ENSSLDG00000004623	si:ch73-63e15.2	77	81.956	ENSPNAG00000020260	si:ch73-63e15.2	86	81.956	Pygocentrus_nattereri
ENSSLDG00000004623	si:ch73-63e15.2	73	69.800	ENSRNOG00000013987	Sbno2	89	69.774	Rattus_norvegicus
ENSSLDG00000004623	si:ch73-63e15.2	68	67.006	ENSRBIG00000009740	SBNO2	86	68.004	Rhinopithecus_bieti
ENSSLDG00000004623	si:ch73-63e15.2	65	70.813	ENSRROG00000044671	SBNO2	85	71.603	Rhinopithecus_roxellana
ENSSLDG00000004623	si:ch73-63e15.2	74	67.952	ENSSBOG00000023562	SBNO2	89	67.808	Saimiri_boliviensis_boliviensis
ENSSLDG00000004623	si:ch73-63e15.2	72	72.070	ENSSHAG00000010241	SBNO2	99	70.425	Sarcophilus_harrisii
ENSSLDG00000004623	si:ch73-63e15.2	90	80.446	ENSSFOG00015005861	si:ch73-63e15.2	96	81.522	Scleropages_formosus
ENSSLDG00000004623	si:ch73-63e15.2	100	91.214	ENSSMAG00000012489	si:ch73-63e15.2	100	91.214	Scophthalmus_maximus
ENSSLDG00000004623	si:ch73-63e15.2	100	98.838	ENSSDUG00000003527	si:ch73-63e15.2	100	98.838	Seriola_dumerili
ENSSLDG00000004623	si:ch73-63e15.2	100	88.739	ENSSPAG00000017717	si:ch73-63e15.2	100	88.932	Stegastes_partitus
ENSSLDG00000004623	si:ch73-63e15.2	74	69.066	ENSSSCG00000030042	SBNO2	90	68.895	Sus_scrofa
ENSSLDG00000004623	si:ch73-63e15.2	71	89.883	ENSTRUG00000018193	si:ch73-63e15.2	86	90.485	Takifugu_rubripes
ENSSLDG00000004623	si:ch73-63e15.2	67	71.103	ENSUAMG00000006568	SBNO2	91	74.919	Ursus_americanus
ENSSLDG00000004623	si:ch73-63e15.2	73	70.174	ENSVVUG00000022823	SBNO2	82	70.069	Vulpes_vulpes
ENSSLDG00000004623	si:ch73-63e15.2	66	75.304	ENSXETG00000021579	sbno2	91	75.506	Xenopus_tropicalis
ENSSLDG00000004623	si:ch73-63e15.2	89	87.241	ENSXCOG00000009209	si:ch73-63e15.2	94	89.547	Xiphophorus_couchianus
ENSSLDG00000004623	si:ch73-63e15.2	100	77.764	ENSXMAG00000012091	si:ch73-63e15.2	91	90.404	Xiphophorus_maculatus