EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000005252 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm2
Alias: -
Full Name: R3H domain containing 2
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 29371 bases
Position: chrPEQF01098967.1:216452-245822
Accession: 111659804
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000006773	R3H	PF01424.22	7.7e-11	1	1
ENSSLDP00000006728	R3H	PF01424.22	8.7e-11	1	1
ENSSLDP00000006683	R3H	PF01424.22	9e-11	1	1
ENSSLDP00000006713	R3H	PF01424.22	9.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000006995	-	2730	-	ENSSLDP00000006773	909 (aa)	-	-
ENSSLDT00000006951	-	4376	XM_023412858	ENSSLDP00000006728	1037 (aa)	XP_023268626	-
ENSSLDT00000006935	-	4421	XM_023412856	ENSSLDP00000006713	1052 (aa)	XP_023268624	-
ENSSLDT00000006904	-	4475	XM_023412850	ENSSLDP00000006683	1070 (aa)	XP_023268618	-

Gene Model

Click here to download ENSSLDG00000005252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000005252's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000005252	r3hdm2	94	38.756	ENSSLDG00000004499	r3hdm1	72	60.092

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000005252	r3hdm2	100	67.600	ENSG00000179912	R3HDM2	89	78.968	Homo_sapiens
ENSSLDG00000005252	r3hdm2	100	97.395	ENSAPOG00000020341	r3hdm2	100	97.395	Acanthochromis_polyacanthus
ENSSLDG00000005252	r3hdm2	51	38.838	ENSAPOG00000021873	-	70	39.810	Acanthochromis_polyacanthus
ENSSLDG00000005252	r3hdm2	95	68.340	ENSAMEG00000004812	R3HDM2	99	65.993	Ailuropoda_melanoleuca
ENSSLDG00000005252	r3hdm2	99	93.923	ENSACIG00000016146	r3hdm2	98	93.149	Amphilophus_citrinellus
ENSSLDG00000005252	r3hdm2	100	97.488	ENSAOCG00000023694	r3hdm2	100	97.488	Amphiprion_ocellaris
ENSSLDG00000005252	r3hdm2	100	97.351	ENSAPEG00000008851	r3hdm2	100	97.351	Amphiprion_percula
ENSSLDG00000005252	r3hdm2	100	93.690	ENSATEG00000025024	r3hdm2	100	93.265	Anabas_testudineus
ENSSLDG00000005252	r3hdm2	100	58.195	ENSAPLG00000004298	R3HDM2	93	71.362	Anas_platyrhynchos
ENSSLDG00000005252	r3hdm2	100	63.061	ENSACAG00000006388	R3HDM2	99	60.951	Anolis_carolinensis
ENSSLDG00000005252	r3hdm2	100	68.182	ENSANAG00000025397	-	99	64.762	Aotus_nancymaae
ENSSLDG00000005252	r3hdm2	100	64.544	ENSANAG00000031310	-	98	61.576	Aotus_nancymaae
ENSSLDG00000005252	r3hdm2	100	96.093	ENSACLG00000019106	r3hdm2	100	96.093	Astatotilapia_calliptera
ENSSLDG00000005252	r3hdm2	100	71.459	ENSAMXG00000017180	r3hdm2	99	73.551	Astyanax_mexicanus
ENSSLDG00000005252	r3hdm2	100	65.792	ENSBTAG00000018361	R3HDM2	99	64.183	Bos_taurus
ENSSLDG00000005252	r3hdm2	100	68.182	ENSCJAG00000007365	R3HDM2	99	64.667	Callithrix_jacchus
ENSSLDG00000005252	r3hdm2	100	65.900	ENSCAFG00000000215	R3HDM2	99	64.700	Canis_familiaris
ENSSLDG00000005252	r3hdm2	100	68.113	ENSCAFG00020023713	R3HDM2	99	66.451	Canis_lupus_dingo
ENSSLDG00000005252	r3hdm2	100	67.197	ENSCHIG00000014022	R3HDM2	99	66.142	Capra_hircus
ENSSLDG00000005252	r3hdm2	100	67.679	ENSTSYG00000001449	R3HDM2	99	65.138	Carlito_syrichta
ENSSLDG00000005252	r3hdm2	100	65.828	ENSCPOG00000009217	R3HDM2	99	65.926	Cavia_porcellus
ENSSLDG00000005252	r3hdm2	88	68.395	ENSCCAG00000026083	R3HDM2	99	65.397	Cebus_capucinus
ENSSLDG00000005252	r3hdm2	100	67.384	ENSCATG00000036929	R3HDM2	99	65.683	Cercocebus_atys
ENSSLDG00000005252	r3hdm2	100	65.687	ENSCLAG00000011997	R3HDM2	99	66.296	Chinchilla_lanigera
ENSSLDG00000005252	r3hdm2	99	66.761	ENSCSAG00000004911	R3HDM2	99	66.510	Chlorocebus_sabaeus
ENSSLDG00000005252	r3hdm2	73	66.934	ENSCHOG00000005636	R3HDM2	89	68.600	Choloepus_hoffmanni
ENSSLDG00000005252	r3hdm2	100	61.976	ENSCPBG00000013922	R3HDM2	99	63.382	Chrysemys_picta_bellii
ENSSLDG00000005252	r3hdm2	100	67.822	ENSCANG00000043807	R3HDM2	99	65.683	Colobus_angolensis_palliatus
ENSSLDG00000005252	r3hdm2	100	64.533	ENSCGRG00001017324	R3hdm2	99	63.636	Cricetulus_griseus_chok1gshd
ENSSLDG00000005252	r3hdm2	100	65.495	ENSCGRG00000003862	R3hdm2	99	63.636	Cricetulus_griseus_crigri
ENSSLDG00000005252	r3hdm2	100	92.606	ENSCSEG00000010925	r3hdm2	100	93.602	Cynoglossus_semilaevis
ENSSLDG00000005252	r3hdm2	100	90.301	ENSCVAG00000009058	r3hdm2	100	89.802	Cyprinodon_variegatus
ENSSLDG00000005252	r3hdm2	99	71.324	ENSDARG00000102610	r3hdm2	99	74.750	Danio_rerio
ENSSLDG00000005252	r3hdm2	99	65.572	ENSDNOG00000015033	R3HDM2	100	67.120	Dasypus_novemcinctus
ENSSLDG00000005252	r3hdm2	100	66.134	ENSDORG00000011462	R3hdm2	98	66.064	Dipodomys_ordii
ENSSLDG00000005252	r3hdm2	100	65.897	ENSEASG00005007091	R3HDM2	99	66.482	Equus_asinus_asinus
ENSSLDG00000005252	r3hdm2	100	65.687	ENSECAG00000003157	R3HDM2	99	66.297	Equus_caballus
ENSSLDG00000005252	r3hdm2	100	81.149	ENSELUG00000015969	r3hdm2	100	80.018	Esox_lucius
ENSSLDG00000005252	r3hdm2	100	67.714	ENSFCAG00000000192	R3HDM2	98	65.537	Felis_catus
ENSSLDG00000005252	r3hdm2	81	63.554	ENSFALG00000000255	R3HDM2	99	60.846	Ficedula_albicollis
ENSSLDG00000005252	r3hdm2	100	65.340	ENSFDAG00000019385	R3HDM2	99	65.683	Fukomys_damarensis
ENSSLDG00000005252	r3hdm2	52	37.973	ENSFHEG00000007936	-	67	39.040	Fundulus_heteroclitus
ENSSLDG00000005252	r3hdm2	100	91.296	ENSFHEG00000016484	r3hdm2	100	90.808	Fundulus_heteroclitus
ENSSLDG00000005252	r3hdm2	95	83.659	ENSGMOG00000007961	r3hdm2	100	83.855	Gadus_morhua
ENSSLDG00000005252	r3hdm2	99	65.804	ENSGALG00000043736	R3HDM2	99	64.576	Gallus_gallus
ENSSLDG00000005252	r3hdm2	100	92.115	ENSGAFG00000013887	r3hdm2	100	91.829	Gambusia_affinis
ENSSLDG00000005252	r3hdm2	95	92.473	ENSGACG00000006442	r3hdm2	100	92.383	Gasterosteus_aculeatus
ENSSLDG00000005252	r3hdm2	100	62.030	ENSGAGG00000017797	R3HDM2	99	62.663	Gopherus_agassizii
ENSSLDG00000005252	r3hdm2	100	67.384	ENSGGOG00000015007	R3HDM2	99	65.683	Gorilla_gorilla
ENSSLDG00000005252	r3hdm2	94	61.124	ENSHGLG00000010421	-	97	59.543	Heterocephalus_glaber_female
ENSSLDG00000005252	r3hdm2	100	65.921	ENSHGLG00000010434	-	99	66.019	Heterocephalus_glaber_female
ENSSLDG00000005252	r3hdm2	97	59.800	ENSHGLG00100018871	-	98	58.165	Heterocephalus_glaber_male
ENSSLDG00000005252	r3hdm2	100	65.477	ENSHGLG00100004183	-	99	65.926	Heterocephalus_glaber_male
ENSSLDG00000005252	r3hdm2	100	90.209	ENSHCOG00000001142	r3hdm2	97	89.449	Hippocampus_comes
ENSSLDG00000005252	r3hdm2	100	76.617	ENSIPUG00000023873	r3hdm2	100	76.753	Ictalurus_punctatus
ENSSLDG00000005252	r3hdm2	100	65.668	ENSSTOG00000013424	R3HDM2	99	60.586	Ictidomys_tridecemlineatus
ENSSLDG00000005252	r3hdm2	100	65.989	ENSJJAG00000010001	R3hdm2	99	65.619	Jaculus_jaculus
ENSSLDG00000005252	r3hdm2	100	92.771	ENSKMAG00000012695	r3hdm2	97	92.586	Kryptolebias_marmoratus
ENSSLDG00000005252	r3hdm2	51	41.312	ENSLBEG00000002779	-	56	45.429	Labrus_bergylta
ENSSLDG00000005252	r3hdm2	100	94.439	ENSLBEG00000013115	r3hdm2	96	94.439	Labrus_bergylta
ENSSLDG00000005252	r3hdm2	95	67.184	ENSLACG00000019064	r3hdm2	100	65.213	Latimeria_chalumnae
ENSSLDG00000005252	r3hdm2	100	74.265	ENSLOCG00000005976	r3hdm2	99	74.138	Lepisosteus_oculatus
ENSSLDG00000005252	r3hdm2	99	66.822	ENSLAFG00000006510	R3HDM2	99	66.729	Loxodonta_africana
ENSSLDG00000005252	r3hdm2	100	68.074	ENSMFAG00000036385	R3HDM2	99	65.959	Macaca_fascicularis
ENSSLDG00000005252	r3hdm2	100	68.074	ENSMMUG00000021789	R3HDM2	99	66.697	Macaca_mulatta
ENSSLDG00000005252	r3hdm2	100	68.074	ENSMNEG00000025314	R3HDM2	99	65.959	Macaca_nemestrina
ENSSLDG00000005252	r3hdm2	100	67.492	ENSMLEG00000028915	R3HDM2	99	65.775	Mandrillus_leucophaeus
ENSSLDG00000005252	r3hdm2	100	96.104	ENSMAMG00000009793	r3hdm2	100	96.104	Mastacembelus_armatus
ENSSLDG00000005252	r3hdm2	100	96.093	ENSMZEG00005007319	r3hdm2	100	96.093	Maylandia_zebra
ENSSLDG00000005252	r3hdm2	100	67.784	ENSMICG00000012389	R3HDM2	99	64.218	Microcebus_murinus
ENSSLDG00000005252	r3hdm2	99	65.495	ENSMOCG00000014425	R3hdm2	99	63.876	Microtus_ochrogaster
ENSSLDG00000005252	r3hdm2	100	90.802	ENSMMOG00000007448	r3hdm2	99	89.305	Mola_mola
ENSSLDG00000005252	r3hdm2	90	88.576	ENSMALG00000010211	r3hdm2	98	87.172	Monopterus_albus
ENSSLDG00000005252	r3hdm2	100	65.745	MGP_CAROLIEiJ_G0015896	R3hdm2	99	65.743	Mus_caroli
ENSSLDG00000005252	r3hdm2	100	66.170	ENSMUSG00000025404	R3hdm2	99	65.894	Mus_musculus
ENSSLDG00000005252	r3hdm2	100	64.743	MGP_PahariEiJ_G0031189	R3hdm2	99	65.709	Mus_pahari
ENSSLDG00000005252	r3hdm2	100	66.064	MGP_SPRETEiJ_G0016722	R3hdm2	99	65.743	Mus_spretus
ENSSLDG00000005252	r3hdm2	98	65.634	ENSMPUG00000001818	R3HDM2	96	65.299	Mustela_putorius_furo
ENSSLDG00000005252	r3hdm2	95	68.019	ENSMLUG00000004980	R3HDM2	99	66.050	Myotis_lucifugus
ENSSLDG00000005252	r3hdm2	99	66.419	ENSNGAG00000018800	R3hdm2	99	66.481	Nannospalax_galili
ENSSLDG00000005252	r3hdm2	100	94.939	ENSNBRG00000004483	r3hdm2	99	93.949	Neolamprologus_brichardi
ENSSLDG00000005252	r3hdm2	100	68.182	ENSNLEG00000017351	R3HDM2	99	65.775	Nomascus_leucogenys
ENSSLDG00000005252	r3hdm2	99	57.593	ENSMEUG00000008588	R3HDM2	99	56.602	Notamacropus_eugenii
ENSSLDG00000005252	r3hdm2	100	62.833	ENSOPRG00000013670	R3HDM2	99	59.560	Ochotona_princeps
ENSSLDG00000005252	r3hdm2	100	91.715	ENSONIG00000005075	r3hdm2	100	90.096	Oreochromis_niloticus
ENSSLDG00000005252	r3hdm2	99	66.359	ENSOCUG00000013258	R3HDM2	99	65.989	Oryctolagus_cuniculus
ENSSLDG00000005252	r3hdm2	100	90.242	ENSORLG00000005502	r3hdm2	100	89.805	Oryzias_latipes
ENSSLDG00000005252	r3hdm2	100	90.265	ENSORLG00020017069	r3hdm2	100	89.821	Oryzias_latipes_hni
ENSSLDG00000005252	r3hdm2	100	90.359	ENSORLG00015012735	r3hdm2	100	89.915	Oryzias_latipes_hsok
ENSSLDG00000005252	r3hdm2	99	88.082	ENSOMEG00000018079	r3hdm2	99	83.992	Oryzias_melastigma
ENSSLDG00000005252	r3hdm2	96	58.043	ENSOGAG00000027966	-	99	56.305	Otolemur_garnettii
ENSSLDG00000005252	r3hdm2	100	63.776	ENSOGAG00000012055	R3HDM2	99	63.696	Otolemur_garnettii
ENSSLDG00000005252	r3hdm2	100	65.795	ENSOARG00000006929	R3HDM2	99	64.286	Ovis_aries
ENSSLDG00000005252	r3hdm2	100	67.600	ENSPPAG00000034395	R3HDM2	99	65.867	Pan_paniscus
ENSSLDG00000005252	r3hdm2	100	67.714	ENSPPRG00000009240	R3HDM2	99	63.628	Panthera_pardus
ENSSLDG00000005252	r3hdm2	100	67.714	ENSPTIG00000008752	R3HDM2	99	63.628	Panthera_tigris_altaica
ENSSLDG00000005252	r3hdm2	100	68.182	ENSPTRG00000046457	R3HDM2	99	66.052	Pan_troglodytes
ENSSLDG00000005252	r3hdm2	100	67.349	ENSPANG00000024002	R3HDM2	96	67.857	Papio_anubis
ENSSLDG00000005252	r3hdm2	100	82.015	ENSPKIG00000003171	r3hdm2	100	81.569	Paramormyrops_kingsleyae
ENSSLDG00000005252	r3hdm2	64	55.373	ENSPSIG00000006954	R3HDM2	64	82.609	Pelodiscus_sinensis
ENSSLDG00000005252	r3hdm2	99	88.546	ENSPMGG00000007061	r3hdm2	99	87.335	Periophthalmus_magnuspinnatus
ENSSLDG00000005252	r3hdm2	99	65.584	ENSPEMG00000015964	R3hdm2	99	65.060	Peromyscus_maniculatus_bairdii
ENSSLDG00000005252	r3hdm2	100	64.619	ENSPCIG00000023841	R3HDM2	99	63.836	Phascolarctos_cinereus
ENSSLDG00000005252	r3hdm2	99	88.626	ENSPFOG00000006077	r3hdm2	92	96.296	Poecilia_formosa
ENSSLDG00000005252	r3hdm2	100	91.902	ENSPLAG00000002971	r3hdm2	100	91.879	Poecilia_latipinna
ENSSLDG00000005252	r3hdm2	100	91.902	ENSPMEG00000005330	r3hdm2	100	91.879	Poecilia_mexicana
ENSSLDG00000005252	r3hdm2	100	91.574	ENSPREG00000008424	r3hdm2	100	91.551	Poecilia_reticulata
ENSSLDG00000005252	r3hdm2	97	64.340	ENSPPYG00000004685	R3HDM2	80	61.149	Pongo_abelii
ENSSLDG00000005252	r3hdm2	90	81.643	ENSPCAG00000014642	R3HDM2	92	81.588	Procavia_capensis
ENSSLDG00000005252	r3hdm2	100	68.039	ENSPCOG00000013201	R3HDM2	99	64.852	Propithecus_coquereli
ENSSLDG00000005252	r3hdm2	99	66.512	ENSPVAG00000003967	R3HDM2	99	66.020	Pteropus_vampyrus
ENSSLDG00000005252	r3hdm2	100	86.561	ENSPNYG00000013479	r3hdm2	100	86.032	Pundamilia_nyererei
ENSSLDG00000005252	r3hdm2	100	75.749	ENSPNAG00000017473	r3hdm2	100	77.677	Pygocentrus_nattereri
ENSSLDG00000005252	r3hdm2	100	64.188	ENSRNOG00000007801	R3hdm2	99	65.310	Rattus_norvegicus
ENSSLDG00000005252	r3hdm2	99	64.914	ENSRBIG00000037403	R3HDM2	99	62.500	Rhinopithecus_bieti
ENSSLDG00000005252	r3hdm2	100	68.182	ENSRROG00000022271	R3HDM2	99	65.775	Rhinopithecus_roxellana
ENSSLDG00000005252	r3hdm2	100	68.182	ENSSBOG00000023547	R3HDM2	99	64.381	Saimiri_boliviensis_boliviensis
ENSSLDG00000005252	r3hdm2	99	64.107	ENSSHAG00000003511	R3HDM2	99	63.774	Sarcophilus_harrisii
ENSSLDG00000005252	r3hdm2	100	77.495	ENSSFOG00015011219	r3hdm2	99	78.441	Scleropages_formosus
ENSSLDG00000005252	r3hdm2	100	95.247	ENSSMAG00000012073	r3hdm2	100	95.247	Scophthalmus_maximus
ENSSLDG00000005252	r3hdm2	100	99.715	ENSSDUG00000019269	r3hdm2	100	99.715	Seriola_dumerili
ENSSLDG00000005252	r3hdm2	100	56.702	ENSSARG00000003958	R3HDM2	97	54.339	Sorex_araneus
ENSSLDG00000005252	r3hdm2	100	61.150	ENSSPUG00000014132	R3HDM2	99	59.480	Sphenodon_punctatus
ENSSLDG00000005252	r3hdm2	100	97.256	ENSSPAG00000022594	r3hdm2	100	97.256	Stegastes_partitus
ENSSLDG00000005252	r3hdm2	100	68.398	ENSSSCG00000026498	R3HDM2	100	67.320	Sus_scrofa
ENSSLDG00000005252	r3hdm2	72	64.751	ENSTGUG00000015881	R3HDM2	99	63.252	Taeniopygia_guttata
ENSSLDG00000005252	r3hdm2	100	92.391	ENSTRUG00000015075	r3hdm2	98	92.174	Takifugu_rubripes
ENSSLDG00000005252	r3hdm2	91	97.486	ENSTNIG00000007057	r3hdm2	90	97.486	Tetraodon_nigroviridis
ENSSLDG00000005252	r3hdm2	80	69.395	ENSTBEG00000015967	R3HDM2	78	65.101	Tupaia_belangeri
ENSSLDG00000005252	r3hdm2	88	77.807	ENSTTRG00000013082	R3HDM2	94	63.874	Tursiops_truncatus
ENSSLDG00000005252	r3hdm2	100	65.966	ENSUAMG00000020913	R3HDM2	99	66.261	Ursus_americanus
ENSSLDG00000005252	r3hdm2	96	67.303	ENSUMAG00000019179	R3HDM2	96	66.008	Ursus_maritimus
ENSSLDG00000005252	r3hdm2	90	81.788	ENSVPAG00000008656	R3HDM2	89	82.818	Vicugna_pacos
ENSSLDG00000005252	r3hdm2	93	68.056	ENSVVUG00000018014	R3HDM2	95	65.975	Vulpes_vulpes
ENSSLDG00000005252	r3hdm2	100	61.675	ENSXETG00000017153	r3hdm2	99	60.741	Xenopus_tropicalis
ENSSLDG00000005252	r3hdm2	92	90.856	ENSXCOG00000013882	r3hdm2	100	90.035	Xiphophorus_couchianus
ENSSLDG00000005252	r3hdm2	100	91.759	ENSXMAG00000017978	r3hdm2	100	91.736	Xiphophorus_maculatus