EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000005989 (Gene tree)
Gene ID: -
Gene Symbol: snrnp48
Alias: fd10a06|wu:fd10a06
Full Name: small nuclear ribonucleoprotein U11/U12 subunit 48
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 5794 bases
Position: chrPEQF01094397.1:4955-10748
Accession: 111649069
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000007554	zf-U11-48K	PF05253.12	1.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000007792	-	1002	XM_023398810	ENSSLDP00000007554	333 (aa)	XP_023254578	-

Gene Model

Click here to download ENSSLDG00000005989's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000005989's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000005989	snrnp48	97	42.090	ENSG00000168566	SNRNP48	83	47.797	Homo_sapiens
ENSSLDG00000005989	snrnp48	95	83.178	ENSAPOG00000021430	snrnp48	95	83.178	Acanthochromis_polyacanthus
ENSSLDG00000005989	snrnp48	92	45.482	ENSAMEG00000017349	SNRNP48	79	48.375	Ailuropoda_melanoleuca
ENSSLDG00000005989	snrnp48	93	75.079	ENSACIG00000002032	snrnp48	95	75.155	Amphilophus_citrinellus
ENSSLDG00000005989	snrnp48	95	82.555	ENSAOCG00000010562	snrnp48	95	82.555	Amphiprion_ocellaris
ENSSLDG00000005989	snrnp48	95	82.759	ENSAPEG00000003231	snrnp48	95	82.759	Amphiprion_percula
ENSSLDG00000005989	snrnp48	92	81.847	ENSATEG00000020210	snrnp48	88	81.757	Anabas_testudineus
ENSSLDG00000005989	snrnp48	81	50.171	ENSACAG00000002811	SNRNP48	80	50.385	Anolis_carolinensis
ENSSLDG00000005989	snrnp48	97	42.373	ENSANAG00000033538	SNRNP48	83	48.136	Aotus_nancymaae
ENSSLDG00000005989	snrnp48	93	54.829	ENSAMXG00000015309	snrnp48	89	57.823	Astyanax_mexicanus
ENSSLDG00000005989	snrnp48	91	42.308	ENSBTAG00000001123	SNRNP48	88	45.875	Bos_taurus
ENSSLDG00000005989	snrnp48	97	42.655	ENSCJAG00000021330	SNRNP48	83	48.475	Callithrix_jacchus
ENSSLDG00000005989	snrnp48	96	42.229	ENSCAFG00000009574	SNRNP48	69	46.341	Canis_familiaris
ENSSLDG00000005989	snrnp48	97	42.029	ENSCAFG00020013203	SNRNP48	83	46.392	Canis_lupus_dingo
ENSSLDG00000005989	snrnp48	91	44.012	ENSCHIG00000015216	SNRNP48	88	46.535	Capra_hircus
ENSSLDG00000005989	snrnp48	79	47.445	ENSTSYG00000000698	SNRNP48	84	46.528	Carlito_syrichta
ENSSLDG00000005989	snrnp48	86	44.025	ENSCAPG00000006768	SNRNP48	80	49.798	Cavia_aperea
ENSSLDG00000005989	snrnp48	96	43.553	ENSCPOG00000007910	SNRNP48	88	46.205	Cavia_porcellus
ENSSLDG00000005989	snrnp48	97	42.029	ENSCCAG00000035652	SNRNP48	88	46.557	Cebus_capucinus
ENSSLDG00000005989	snrnp48	97	43.380	ENSCATG00000033947	SNRNP48	83	47.797	Cercocebus_atys
ENSSLDG00000005989	snrnp48	92	43.293	ENSCLAG00000003765	SNRNP48	84	47.586	Chinchilla_lanigera
ENSSLDG00000005989	snrnp48	97	42.938	ENSCSAG00000007409	SNRNP48	83	47.797	Chlorocebus_sabaeus
ENSSLDG00000005989	snrnp48	80	48.299	ENSCPBG00000019146	SNRNP48	75	52.697	Chrysemys_picta_bellii
ENSSLDG00000005989	snrnp48	97	42.373	ENSCANG00000030017	SNRNP48	83	48.136	Colobus_angolensis_palliatus
ENSSLDG00000005989	snrnp48	92	43.675	ENSCGRG00001001076	-	85	46.416	Cricetulus_griseus_chok1gshd
ENSSLDG00000005989	snrnp48	84	40.345	ENSCGRG00001008805	-	91	40.830	Cricetulus_griseus_chok1gshd
ENSSLDG00000005989	snrnp48	92	43.675	ENSCGRG00000007781	Snrnp48	85	46.416	Cricetulus_griseus_crigri
ENSSLDG00000005989	snrnp48	93	68.254	ENSCSEG00000000722	snrnp48	88	70.000	Cynoglossus_semilaevis
ENSSLDG00000005989	snrnp48	87	77.441	ENSCVAG00000019829	snrnp48	77	77.592	Cyprinodon_variegatus
ENSSLDG00000005989	snrnp48	92	53.292	ENSDARG00000039989	snrnp48	89	53.821	Danio_rerio
ENSSLDG00000005989	snrnp48	95	41.983	ENSDNOG00000014978	SNRNP48	81	46.831	Dasypus_novemcinctus
ENSSLDG00000005989	snrnp48	92	43.363	ENSDORG00000015140	Snrnp48	84	45.704	Dipodomys_ordii
ENSSLDG00000005989	snrnp48	96	41.499	ENSEASG00005012021	SNRNP48	98	43.363	Equus_asinus_asinus
ENSSLDG00000005989	snrnp48	83	46.875	ENSECAG00000026937	SNRNP48	88	45.928	Equus_caballus
ENSSLDG00000005989	snrnp48	92	31.003	ENSEEUG00000015437	SNRNP48	84	31.944	Erinaceus_europaeus
ENSSLDG00000005989	snrnp48	93	59.050	ENSELUG00000009766	snrnp48	80	63.889	Esox_lucius
ENSSLDG00000005989	snrnp48	84	47.635	ENSFCAG00000018853	SNRNP48	83	47.635	Felis_catus
ENSSLDG00000005989	snrnp48	68	57.143	ENSFALG00000007797	SNRNP48	85	53.532	Ficedula_albicollis
ENSSLDG00000005989	snrnp48	95	44.315	ENSFDAG00000009231	SNRNP48	88	46.844	Fukomys_damarensis
ENSSLDG00000005989	snrnp48	65	81.333	ENSFHEG00000014647	snrnp48	95	79.927	Fundulus_heteroclitus
ENSSLDG00000005989	snrnp48	90	61.180	ENSGMOG00000018599	-	96	62.701	Gadus_morhua
ENSSLDG00000005989	snrnp48	76	54.074	ENSGALG00000013005	SNRNP48	90	53.532	Gallus_gallus
ENSSLDG00000005989	snrnp48	95	73.700	ENSGAFG00000021639	snrnp48	95	73.700	Gambusia_affinis
ENSSLDG00000005989	snrnp48	74	81.526	ENSGACG00000017756	-	97	74.618	Gasterosteus_aculeatus
ENSSLDG00000005989	snrnp48	80	47.959	ENSGAGG00000000865	SNRNP48	78	52.282	Gopherus_agassizii
ENSSLDG00000005989	snrnp48	97	42.373	ENSGGOG00000013220	SNRNP48	83	48.136	Gorilla_gorilla
ENSSLDG00000005989	snrnp48	93	78.797	ENSHBUG00000017066	snrnp48	94	78.505	Haplochromis_burtoni
ENSSLDG00000005989	snrnp48	96	41.954	ENSHGLG00000015241	SNRNP48	88	46.104	Heterocephalus_glaber_female
ENSSLDG00000005989	snrnp48	96	41.954	ENSHGLG00100010027	SNRNP48	88	46.104	Heterocephalus_glaber_male
ENSSLDG00000005989	snrnp48	81	68.571	ENSHCOG00000014066	snrnp48	94	67.178	Hippocampus_comes
ENSSLDG00000005989	snrnp48	92	43.323	ENSSTOG00000014635	SNRNP48	84	47.811	Ictidomys_tridecemlineatus
ENSSLDG00000005989	snrnp48	79	49.270	ENSJJAG00000011495	Snrnp48	87	47.368	Jaculus_jaculus
ENSSLDG00000005989	snrnp48	95	73.375	ENSKMAG00000016514	snrnp48	95	75.542	Kryptolebias_marmoratus
ENSSLDG00000005989	snrnp48	95	81.366	ENSLBEG00000026249	snrnp48	95	81.620	Labrus_bergylta
ENSSLDG00000005989	snrnp48	91	50.473	ENSLACG00000003958	SNRNP48	87	50.336	Latimeria_chalumnae
ENSSLDG00000005989	snrnp48	82	60.357	ENSLOCG00000004187	snrnp48	94	56.918	Lepisosteus_oculatus
ENSSLDG00000005989	snrnp48	79	47.636	ENSLAFG00000011152	SNRNP48	81	47.552	Loxodonta_africana
ENSSLDG00000005989	snrnp48	97	42.373	ENSMFAG00000045216	SNRNP48	83	48.136	Macaca_fascicularis
ENSSLDG00000005989	snrnp48	97	42.373	ENSMMUG00000014785	SNRNP48	83	48.136	Macaca_mulatta
ENSSLDG00000005989	snrnp48	97	42.373	ENSMNEG00000042269	SNRNP48	83	48.136	Macaca_nemestrina
ENSSLDG00000005989	snrnp48	97	42.373	ENSMLEG00000034004	SNRNP48	83	48.136	Mandrillus_leucophaeus
ENSSLDG00000005989	snrnp48	93	78.205	ENSMAMG00000018673	snrnp48	83	76.803	Mastacembelus_armatus
ENSSLDG00000005989	snrnp48	81	51.325	ENSMGAG00000006037	SNRNP48	91	52.574	Meleagris_gallopavo
ENSSLDG00000005989	snrnp48	92	43.675	ENSMAUG00000011944	Snrnp48	89	45.000	Mesocricetus_auratus
ENSSLDG00000005989	snrnp48	92	42.604	ENSMICG00000012497	SNRNP48	79	48.387	Microcebus_murinus
ENSSLDG00000005989	snrnp48	96	44.868	ENSMOCG00000015555	Snrnp48	89	46.512	Microtus_ochrogaster
ENSSLDG00000005989	snrnp48	56	86.243	ENSMMOG00000003072	-	60	86.243	Mola_mola
ENSSLDG00000005989	snrnp48	83	45.946	ENSMODG00000009996	SNRNP48	84	45.079	Monodelphis_domestica
ENSSLDG00000005989	snrnp48	95	81.677	ENSMALG00000005725	snrnp48	95	81.931	Monopterus_albus
ENSSLDG00000005989	snrnp48	92	43.675	MGP_CAROLIEiJ_G0018441	Snrnp48	85	45.486	Mus_caroli
ENSSLDG00000005989	snrnp48	92	43.373	ENSMUSG00000021431	Snrnp48	85	45.139	Mus_musculus
ENSSLDG00000005989	snrnp48	92	44.277	MGP_PahariEiJ_G0019509	Snrnp48	85	47.782	Mus_pahari
ENSSLDG00000005989	snrnp48	92	43.072	MGP_SPRETEiJ_G0019321	Snrnp48	85	45.486	Mus_spretus
ENSSLDG00000005989	snrnp48	96	43.553	ENSNGAG00000004849	Snrnp48	88	45.847	Nannospalax_galili
ENSSLDG00000005989	snrnp48	93	78.797	ENSNBRG00000012127	snrnp48	94	78.505	Neolamprologus_brichardi
ENSSLDG00000005989	snrnp48	97	42.373	ENSNLEG00000011667	SNRNP48	83	48.136	Nomascus_leucogenys
ENSSLDG00000005989	snrnp48	88	46.078	ENSOPRG00000015471	SNRNP48	88	47.241	Ochotona_princeps
ENSSLDG00000005989	snrnp48	93	78.864	ENSONIG00000001520	snrnp48	94	78.882	Oreochromis_niloticus
ENSSLDG00000005989	snrnp48	53	36.816	ENSOANG00000019888	-	96	37.811	Ornithorhynchus_anatinus
ENSSLDG00000005989	snrnp48	78	47.794	ENSOCUG00000005168	SNRNP48	88	48.551	Oryctolagus_cuniculus
ENSSLDG00000005989	snrnp48	88	76.190	ENSORLG00000015654	snrnp48	94	75.235	Oryzias_latipes
ENSSLDG00000005989	snrnp48	88	75.850	ENSORLG00020015976	snrnp48	80	74.922	Oryzias_latipes_hni
ENSSLDG00000005989	snrnp48	88	76.871	ENSORLG00015022379	snrnp48	80	75.862	Oryzias_latipes_hsok
ENSSLDG00000005989	snrnp48	93	78.275	ENSOMEG00000022007	snrnp48	94	77.673	Oryzias_melastigma
ENSSLDG00000005989	snrnp48	82	46.713	ENSOGAG00000005275	SNRNP48	84	46.713	Otolemur_garnettii
ENSSLDG00000005989	snrnp48	81	45.675	ENSOARG00000017319	SNRNP48	85	49.194	Ovis_aries
ENSSLDG00000005989	snrnp48	97	42.373	ENSPPAG00000032873	SNRNP48	83	48.136	Pan_paniscus
ENSSLDG00000005989	snrnp48	79	49.104	ENSPPRG00000004283	SNRNP48	79	49.104	Panthera_pardus
ENSSLDG00000005989	snrnp48	68	51.261	ENSPTIG00000013502	SNRNP48	79	51.261	Panthera_tigris_altaica
ENSSLDG00000005989	snrnp48	97	42.373	ENSPTRG00000017703	SNRNP48	83	48.136	Pan_troglodytes
ENSSLDG00000005989	snrnp48	97	42.373	ENSPANG00000000771	SNRNP48	83	48.136	Papio_anubis
ENSSLDG00000005989	snrnp48	91	55.689	ENSPKIG00000013703	snrnp48	61	59.862	Paramormyrops_kingsleyae
ENSSLDG00000005989	snrnp48	77	48.746	ENSPSIG00000002213	SNRNP48	76	52.263	Pelodiscus_sinensis
ENSSLDG00000005989	snrnp48	77	65.543	ENSPMGG00000008120	snrnp48	95	65.543	Periophthalmus_magnuspinnatus
ENSSLDG00000005989	snrnp48	92	43.976	ENSPEMG00000008872	Snrnp48	85	47.099	Peromyscus_maniculatus_bairdii
ENSSLDG00000005989	snrnp48	95	73.860	ENSPFOG00000003578	snrnp48	95	73.860	Poecilia_formosa
ENSSLDG00000005989	snrnp48	70	76.569	ENSPLAG00000002290	snrnp48	92	71.269	Poecilia_latipinna
ENSSLDG00000005989	snrnp48	95	74.468	ENSPMEG00000018033	snrnp48	95	74.468	Poecilia_mexicana
ENSSLDG00000005989	snrnp48	95	73.252	ENSPREG00000018541	snrnp48	95	73.252	Poecilia_reticulata
ENSSLDG00000005989	snrnp48	97	42.090	ENSPPYG00000016209	SNRNP48	83	47.797	Pongo_abelii
ENSSLDG00000005989	snrnp48	71	37.052	ENSPCAG00000011991	SNRNP48	97	37.269	Procavia_capensis
ENSSLDG00000005989	snrnp48	82	46.853	ENSPVAG00000002854	SNRNP48	81	47.902	Pteropus_vampyrus
ENSSLDG00000005989	snrnp48	92	79.421	ENSPNYG00000015399	snrnp48	95	80.135	Pundamilia_nyererei
ENSSLDG00000005989	snrnp48	92	44.048	ENSRNOG00000013756	Snrnp48	85	47.782	Rattus_norvegicus
ENSSLDG00000005989	snrnp48	84	47.119	ENSRBIG00000043856	SNRNP48	89	48.136	Rhinopithecus_bieti
ENSSLDG00000005989	snrnp48	97	42.373	ENSRROG00000043229	SNRNP48	83	48.136	Rhinopithecus_roxellana
ENSSLDG00000005989	snrnp48	97	42.655	ENSSBOG00000019486	SNRNP48	83	48.475	Saimiri_boliviensis_boliviensis
ENSSLDG00000005989	snrnp48	82	46.758	ENSSHAG00000014483	SNRNP48	89	45.833	Sarcophilus_harrisii
ENSSLDG00000005989	snrnp48	73	58.730	ENSSFOG00015006610	snrnp48	73	57.655	Scleropages_formosus
ENSSLDG00000005989	snrnp48	100	96.997	ENSSDUG00000014953	snrnp48	100	96.997	Seriola_dumerili
ENSSLDG00000005989	snrnp48	74	49.064	ENSSPUG00000006257	SNRNP48	68	51.037	Sphenodon_punctatus
ENSSLDG00000005989	snrnp48	95	81.056	ENSSPAG00000006454	snrnp48	95	81.308	Stegastes_partitus
ENSSLDG00000005989	snrnp48	76	51.064	ENSTGUG00000007575	SNRNP48	79	52.988	Taeniopygia_guttata
ENSSLDG00000005989	snrnp48	95	66.355	ENSTRUG00000007031	snrnp48	88	71.761	Takifugu_rubripes
ENSSLDG00000005989	snrnp48	99	65.875	ENSTNIG00000012977	-	86	67.785	Tetraodon_nigroviridis
ENSSLDG00000005989	snrnp48	73	49.407	ENSTBEG00000015620	SNRNP48	74	49.407	Tupaia_belangeri
ENSSLDG00000005989	snrnp48	97	43.137	ENSTTRG00000016715	SNRNP48	83	48.136	Tursiops_truncatus
ENSSLDG00000005989	snrnp48	97	43.023	ENSUAMG00000003690	SNRNP48	83	47.586	Ursus_americanus
ENSSLDG00000005989	snrnp48	68	50.000	ENSVPAG00000003557	SNRNP48	85	48.387	Vicugna_pacos
ENSSLDG00000005989	snrnp48	92	42.988	ENSVVUG00000004996	SNRNP48	79	47.810	Vulpes_vulpes
ENSSLDG00000005989	snrnp48	91	48.377	ENSXETG00000020447	snrnp48	97	45.970	Xenopus_tropicalis
ENSSLDG00000005989	snrnp48	95	64.907	ENSXCOG00000004478	snrnp48	95	68.308	Xiphophorus_couchianus
ENSSLDG00000005989	snrnp48	95	74.085	ENSXMAG00000013595	snrnp48	95	74.085	Xiphophorus_maculatus