EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000006406 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 12128 bases
Position: chrPEQF01099011.1:249215-261342
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000008065	zf-C2H2	PF00096.26	2.2e-17	1	3
ENSSLDP00000008065	zf-C2H2	PF00096.26	2.2e-17	2	3
ENSSLDP00000008065	zf-C2H2	PF00096.26	2.2e-17	3	3
ENSSLDP00000008045	zf-C2H2	PF00096.26	2.4e-16	1	3
ENSSLDP00000008045	zf-C2H2	PF00096.26	2.4e-16	2	3
ENSSLDP00000008045	zf-C2H2	PF00096.26	2.4e-16	3	3
ENSSLDP00000008065	zf-met	PF12874.7	5.4e-07	1	1
ENSSLDP00000008045	zf-met	PF12874.7	9.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000008306	-	4734	-	ENSSLDP00000008045	898 (aa)	-	-
ENSSLDT00000008327	-	3703	-	ENSSLDP00000008065	640 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000006406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000006406's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000006406	-	50	38.509	ENSSLDG00000006288	-	96	43.421
ENSSLDG00000006406	-	53	35.152	ENSSLDG00000002776	-	68	35.443

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000006406	-	97	53.268	ENSATEG00000010327	-	95	51.448	Anabas_testudineus