EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000006827 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 7528 bases
Position: chrPEQF01096571.1:251368-258895
Accession: 111649930
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000008606	LSM	PF01423.22	1.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000008885	-	4921	XM_023399628	ENSSLDP00000008606	168 (aa)	XP_023255396	UPI000C6FCAE1

Gene Model

Click here to download ENSSLDG00000006827's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000006827's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000006827	lsm4	52	98.864	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSSLDG00000006827	lsm4	100	88.690	ENSAPOG00000005643	lsm4	100	88.690	Acanthochromis_polyacanthus
ENSSLDG00000006827	lsm4	52	98.851	ENSAMEG00000011162	LSM4	67	96.939	Ailuropoda_melanoleuca
ENSSLDG00000006827	lsm4	100	86.905	ENSAOCG00000006414	lsm4	100	86.905	Amphiprion_ocellaris
ENSSLDG00000006827	lsm4	100	87.500	ENSAPEG00000006238	lsm4	100	87.500	Amphiprion_percula
ENSSLDG00000006827	lsm4	100	87.500	ENSATEG00000016559	lsm4	100	87.500	Anabas_testudineus
ENSSLDG00000006827	lsm4	52	98.864	ENSANAG00000034659	LSM4	71	96.970	Aotus_nancymaae
ENSSLDG00000006827	lsm4	100	85.119	ENSACLG00000022738	lsm4	100	85.119	Astatotilapia_calliptera
ENSSLDG00000006827	lsm4	100	73.964	ENSAMXG00000016932	lsm4	100	76.923	Astyanax_mexicanus
ENSSLDG00000006827	lsm4	52	98.864	ENSBTAG00000008578	LSM4	71	96.970	Bos_taurus
ENSSLDG00000006827	lsm4	52	98.864	ENSCJAG00000014171	LSM4	71	96.970	Callithrix_jacchus
ENSSLDG00000006827	lsm4	52	98.864	ENSCAFG00000014900	LSM4	65	96.970	Canis_familiaris
ENSSLDG00000006827	lsm4	52	98.864	ENSCAFG00020012137	LSM4	71	96.970	Canis_lupus_dingo
ENSSLDG00000006827	lsm4	52	98.851	ENSCHIG00000010928	LSM4	65	96.939	Capra_hircus
ENSSLDG00000006827	lsm4	52	97.727	ENSTSYG00000030906	LSM4	71	95.960	Carlito_syrichta
ENSSLDG00000006827	lsm4	52	97.727	ENSCAPG00000014140	LSM4	71	95.960	Cavia_aperea
ENSSLDG00000006827	lsm4	52	97.727	ENSCPOG00000024117	LSM4	71	95.960	Cavia_porcellus
ENSSLDG00000006827	lsm4	52	98.864	ENSCCAG00000036308	LSM4	71	96.970	Cebus_capucinus
ENSSLDG00000006827	lsm4	64	94.495	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSSLDG00000006827	lsm4	52	98.864	ENSCLAG00000010828	LSM4	71	96.970	Chinchilla_lanigera
ENSSLDG00000006827	lsm4	52	98.864	ENSCSAG00000005370	LSM4	71	96.970	Chlorocebus_sabaeus
ENSSLDG00000006827	lsm4	52	100.000	ENSCPBG00000012925	LSM4	72	97.980	Chrysemys_picta_bellii
ENSSLDG00000006827	lsm4	51	93.023	ENSCING00000007519	-	76	87.629	Ciona_intestinalis
ENSSLDG00000006827	lsm4	51	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSSLDG00000006827	lsm4	52	98.864	ENSCANG00000043686	LSM4	97	72.464	Colobus_angolensis_palliatus
ENSSLDG00000006827	lsm4	52	95.455	ENSCGRG00001014436	Lsm4	71	93.939	Cricetulus_griseus_chok1gshd
ENSSLDG00000006827	lsm4	52	95.402	ENSCGRG00000009398	Lsm4	71	93.878	Cricetulus_griseus_crigri
ENSSLDG00000006827	lsm4	100	69.048	ENSCSEG00000016127	lsm4	100	81.548	Cynoglossus_semilaevis
ENSSLDG00000006827	lsm4	91	79.085	ENSCVAG00000021828	lsm4	98	79.085	Cyprinodon_variegatus
ENSSLDG00000006827	lsm4	100	80.952	ENSCVAG00000010601	lsm4	100	80.952	Cyprinodon_variegatus
ENSSLDG00000006827	lsm4	59	97.980	ENSDARG00000023852	lsm4	69	97.980	Danio_rerio
ENSSLDG00000006827	lsm4	52	97.727	ENSDORG00000024225	Lsm4	71	95.960	Dipodomys_ordii
ENSSLDG00000006827	lsm4	60	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSSLDG00000006827	lsm4	77	91.538	ENSELUG00000012821	lsm4	93	93.496	Esox_lucius
ENSSLDG00000006827	lsm4	52	98.864	ENSFCAG00000040580	LSM4	71	96.970	Felis_catus
ENSSLDG00000006827	lsm4	52	100.000	ENSFALG00000009478	LSM4	71	97.959	Ficedula_albicollis
ENSSLDG00000006827	lsm4	52	98.851	ENSFDAG00000010124	LSM4	71	96.939	Fukomys_damarensis
ENSSLDG00000006827	lsm4	99	66.071	ENSGMOG00000007729	lsm4	99	67.857	Gadus_morhua
ENSSLDG00000006827	lsm4	52	100.000	ENSGALG00000003385	LSM4	72	97.980	Gallus_gallus
ENSSLDG00000006827	lsm4	100	79.762	ENSGAFG00000004903	lsm4	97	76.471	Gambusia_affinis
ENSSLDG00000006827	lsm4	100	79.412	ENSGACG00000008140	lsm4	100	80.000	Gasterosteus_aculeatus
ENSSLDG00000006827	lsm4	52	100.000	ENSGAGG00000017812	LSM4	72	97.980	Gopherus_agassizii
ENSSLDG00000006827	lsm4	52	98.864	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSSLDG00000006827	lsm4	100	84.524	ENSHBUG00000008858	lsm4	80	84.524	Haplochromis_burtoni
ENSSLDG00000006827	lsm4	82	76.259	ENSHGLG00000006568	LSM4	71	96.970	Heterocephalus_glaber_female
ENSSLDG00000006827	lsm4	55	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSSLDG00000006827	lsm4	100	82.143	ENSHCOG00000008819	lsm4	100	82.143	Hippocampus_comes
ENSSLDG00000006827	lsm4	100	73.964	ENSIPUG00000005368	Lsm4	100	76.923	Ictalurus_punctatus
ENSSLDG00000006827	lsm4	52	98.864	ENSSTOG00000016494	LSM4	71	96.970	Ictidomys_tridecemlineatus
ENSSLDG00000006827	lsm4	52	96.591	ENSJJAG00000017420	Lsm4	71	94.949	Jaculus_jaculus
ENSSLDG00000006827	lsm4	100	79.167	ENSKMAG00000005073	lsm4	100	81.548	Kryptolebias_marmoratus
ENSSLDG00000006827	lsm4	100	88.095	ENSLBEG00000027930	lsm4	100	88.095	Labrus_bergylta
ENSSLDG00000006827	lsm4	52	100.000	ENSLACG00000015861	LSM4	71	97.980	Latimeria_chalumnae
ENSSLDG00000006827	lsm4	77	83.721	ENSLOCG00000002025	lsm4	100	73.964	Lepisosteus_oculatus
ENSSLDG00000006827	lsm4	52	97.701	ENSLAFG00000017459	LSM4	71	95.918	Loxodonta_africana
ENSSLDG00000006827	lsm4	52	98.864	ENSMFAG00000031194	LSM4	97	72.464	Macaca_fascicularis
ENSSLDG00000006827	lsm4	52	98.864	ENSMMUG00000004405	LSM4	71	96.970	Macaca_mulatta
ENSSLDG00000006827	lsm4	61	94.231	ENSMNEG00000042899	LSM4	97	72.464	Macaca_nemestrina
ENSSLDG00000006827	lsm4	64	94.495	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSSLDG00000006827	lsm4	100	82.738	ENSMAMG00000006190	lsm4	100	82.738	Mastacembelus_armatus
ENSSLDG00000006827	lsm4	100	84.524	ENSMZEG00005016420	lsm4	100	84.524	Maylandia_zebra
ENSSLDG00000006827	lsm4	81	76.087	ENSMGAG00000004976	LSM4	71	97.959	Meleagris_gallopavo
ENSSLDG00000006827	lsm4	59	95.960	ENSMICG00000000222	LSM4	71	95.960	Microcebus_murinus
ENSSLDG00000006827	lsm4	52	95.455	ENSMOCG00000020861	Lsm4	71	93.939	Microtus_ochrogaster
ENSSLDG00000006827	lsm4	100	82.143	ENSMALG00000018159	lsm4	100	82.143	Monopterus_albus
ENSSLDG00000006827	lsm4	52	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	Mus_caroli
ENSSLDG00000006827	lsm4	52	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSSLDG00000006827	lsm4	52	95.455	MGP_PahariEiJ_G0021623	Lsm4	71	93.939	Mus_pahari
ENSSLDG00000006827	lsm4	52	95.455	MGP_SPRETEiJ_G0032276	Lsm4	71	93.939	Mus_spretus
ENSSLDG00000006827	lsm4	52	98.864	ENSMPUG00000015589	LSM4	71	96.970	Mustela_putorius_furo
ENSSLDG00000006827	lsm4	52	98.851	ENSMLUG00000004010	LSM4	71	96.939	Myotis_lucifugus
ENSSLDG00000006827	lsm4	52	95.455	ENSNGAG00000008644	Lsm4	71	93.939	Nannospalax_galili
ENSSLDG00000006827	lsm4	64	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSSLDG00000006827	lsm4	52	88.636	ENSODEG00000004519	-	72	86.869	Octodon_degus
ENSSLDG00000006827	lsm4	82	60.432	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSSLDG00000006827	lsm4	52	98.864	ENSODEG00000020549	-	71	96.970	Octodon_degus
ENSSLDG00000006827	lsm4	100	85.119	ENSONIG00000012724	lsm4	100	85.119	Oreochromis_niloticus
ENSSLDG00000006827	lsm4	52	94.505	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSSLDG00000006827	lsm4	100	80.952	ENSORLG00000008391	lsm4	100	80.952	Oryzias_latipes
ENSSLDG00000006827	lsm4	100	81.548	ENSORLG00020014829	lsm4	100	81.548	Oryzias_latipes_hni
ENSSLDG00000006827	lsm4	100	80.952	ENSORLG00015010205	lsm4	100	80.952	Oryzias_latipes_hsok
ENSSLDG00000006827	lsm4	100	79.762	ENSOMEG00000003606	lsm4	100	79.762	Oryzias_melastigma
ENSSLDG00000006827	lsm4	58	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSSLDG00000006827	lsm4	52	98.851	ENSOARG00000012553	LSM4	68	96.939	Ovis_aries
ENSSLDG00000006827	lsm4	52	98.864	ENSPPAG00000044045	-	71	96.970	Pan_paniscus
ENSSLDG00000006827	lsm4	52	98.864	ENSPPRG00000018264	LSM4	71	96.970	Panthera_pardus
ENSSLDG00000006827	lsm4	52	98.851	ENSPTIG00000006306	LSM4	71	96.939	Panthera_tigris_altaica
ENSSLDG00000006827	lsm4	65	94.545	ENSPTRG00000031470	LSM4	71	96.970	Pan_troglodytes
ENSSLDG00000006827	lsm4	64	94.495	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSSLDG00000006827	lsm4	100	76.923	ENSPKIG00000006154	lsm4	100	76.923	Paramormyrops_kingsleyae
ENSSLDG00000006827	lsm4	52	100.000	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSSLDG00000006827	lsm4	52	95.455	ENSPEMG00000001358	Lsm4	71	93.939	Peromyscus_maniculatus_bairdii
ENSSLDG00000006827	lsm4	100	79.762	ENSPFOG00000000570	lsm4	76	79.762	Poecilia_formosa
ENSSLDG00000006827	lsm4	100	79.762	ENSPLAG00000016267	lsm4	100	79.762	Poecilia_latipinna
ENSSLDG00000006827	lsm4	100	79.762	ENSPMEG00000016378	lsm4	100	79.762	Poecilia_mexicana
ENSSLDG00000006827	lsm4	100	80.357	ENSPREG00000011290	lsm4	76	80.357	Poecilia_reticulata
ENSSLDG00000006827	lsm4	52	98.864	ENSPPYG00000009736	LSM4	71	96.970	Pongo_abelii
ENSSLDG00000006827	lsm4	59	95.960	ENSPCOG00000019837	LSM4	71	95.960	Propithecus_coquereli
ENSSLDG00000006827	lsm4	52	98.864	ENSPVAG00000015383	LSM4	71	96.970	Pteropus_vampyrus
ENSSLDG00000006827	lsm4	100	84.524	ENSPNYG00000016794	lsm4	100	84.524	Pundamilia_nyererei
ENSSLDG00000006827	lsm4	96	78.261	ENSPNAG00000016598	lsm4	100	78.261	Pygocentrus_nattereri
ENSSLDG00000006827	lsm4	52	95.455	ENSRNOG00000019572	Lsm4	71	93.939	Rattus_norvegicus
ENSSLDG00000006827	lsm4	52	98.864	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSSLDG00000006827	lsm4	64	94.495	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSSLDG00000006827	lsm4	52	100.000	ENSSHAG00000011559	LSM4	71	97.980	Sarcophilus_harrisii
ENSSLDG00000006827	lsm4	100	76.923	ENSSFOG00015021067	lsm4	100	75.740	Scleropages_formosus
ENSSLDG00000006827	lsm4	100	76.190	ENSSMAG00000021020	lsm4	100	81.657	Scophthalmus_maximus
ENSSLDG00000006827	lsm4	100	99.405	ENSSDUG00000009588	lsm4	100	99.405	Seriola_dumerili
ENSSLDG00000006827	lsm4	52	100.000	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSSLDG00000006827	lsm4	100	88.095	ENSSPAG00000011615	lsm4	100	88.095	Stegastes_partitus
ENSSLDG00000006827	lsm4	52	98.864	ENSSSCG00000034314	LSM4	71	96.970	Sus_scrofa
ENSSLDG00000006827	lsm4	100	80.952	ENSTRUG00000021737	lsm4	100	80.952	Takifugu_rubripes
ENSSLDG00000006827	lsm4	100	80.473	ENSTNIG00000010191	lsm4	100	76.331	Tetraodon_nigroviridis
ENSSLDG00000006827	lsm4	65	94.545	ENSUAMG00000000665	LSM4	91	94.545	Ursus_americanus
ENSSLDG00000006827	lsm4	52	98.864	ENSUMAG00000009013	LSM4	71	96.970	Ursus_maritimus
ENSSLDG00000006827	lsm4	52	98.851	ENSVVUG00000008136	LSM4	50	96.939	Vulpes_vulpes
ENSSLDG00000006827	lsm4	58	96.939	ENSXETG00000024933	lsm4	71	96.939	Xenopus_tropicalis
ENSSLDG00000006827	lsm4	100	79.167	ENSXMAG00000026672	lsm4	76	79.167	Xiphophorus_maculatus