EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000007224 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 12277 bases
Position: chrPEQF01098017.1:889004-901280
Accession: 111651232
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000009143	ResIII	PF04851.15	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000009453	SMARCAL1-201	4305	XM_023401196	ENSSLDP00000009143	917 (aa)	XP_023256964	UPI000C6F5BA3

Gene Model

Click here to download ENSSLDG00000007224's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000007224's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000007224	SMARCAL1	97	50.266	ENSG00000138375	SMARCAL1	99	66.460	Homo_sapiens
ENSSLDG00000007224	SMARCAL1	99	82.916	ENSAPOG00000020156	SMARCAL1	99	82.916	Acanthochromis_polyacanthus
ENSSLDG00000007224	SMARCAL1	93	85.890	ENSACIG00000001500	smarcal1	97	85.890	Amphilophus_citrinellus
ENSSLDG00000007224	SMARCAL1	99	82.561	ENSAOCG00000014266	SMARCAL1	100	82.561	Amphiprion_ocellaris
ENSSLDG00000007224	SMARCAL1	99	82.372	ENSAPEG00000015861	SMARCAL1	99	82.372	Amphiprion_percula
ENSSLDG00000007224	SMARCAL1	100	83.333	ENSATEG00000020624	SMARCAL1	100	83.224	Anabas_testudineus
ENSSLDG00000007224	SMARCAL1	99	51.109	ENSAPLG00000009864	SMARCAL1	77	61.436	Anas_platyrhynchos
ENSSLDG00000007224	SMARCAL1	100	62.204	ENSACAG00000004612	SMARCAL1	73	62.204	Anolis_carolinensis
ENSSLDG00000007224	SMARCAL1	99	81.619	ENSACLG00000015990	SMARCAL1	99	81.510	Astatotilapia_calliptera
ENSSLDG00000007224	SMARCAL1	100	65.431	ENSAMXG00000003350	smarcal1	99	65.322	Astyanax_mexicanus
ENSSLDG00000007224	SMARCAL1	100	52.314	ENSCPBG00000013599	SMARCAL1	99	52.419	Chrysemys_picta_bellii
ENSSLDG00000007224	SMARCAL1	69	48.906	ENSCING00000009308	-	100	48.906	Ciona_intestinalis
ENSSLDG00000007224	SMARCAL1	98	75.415	ENSCSEG00000010785	SMARCAL1	99	75.305	Cynoglossus_semilaevis
ENSSLDG00000007224	SMARCAL1	100	72.777	ENSCVAG00000018780	SMARCAL1	100	72.777	Cyprinodon_variegatus
ENSSLDG00000007224	SMARCAL1	100	69.045	ENSELUG00000010440	-	100	69.649	Esox_lucius
ENSSLDG00000007224	SMARCAL1	96	52.716	ENSFALG00000003981	SMARCAL1	72	63.218	Ficedula_albicollis
ENSSLDG00000007224	SMARCAL1	100	75.734	ENSFHEG00000008380	SMARCAL1	100	75.734	Fundulus_heteroclitus
ENSSLDG00000007224	SMARCAL1	61	75.177	ENSGMOG00000010034	smarcal1	95	75.177	Gadus_morhua
ENSSLDG00000007224	SMARCAL1	96	52.737	ENSGALG00000011475	RPL37A	96	52.737	Gallus_gallus
ENSSLDG00000007224	SMARCAL1	82	84.112	ENSGACG00000006073	SMARCAL1	100	86.406	Gasterosteus_aculeatus
ENSSLDG00000007224	SMARCAL1	73	64.531	ENSGAGG00000015660	SMARCAL1	73	64.531	Gopherus_agassizii
ENSSLDG00000007224	SMARCAL1	99	81.202	ENSHBUG00000002973	smarcal1	99	81.093	Haplochromis_burtoni
ENSSLDG00000007224	SMARCAL1	95	72.520	ENSHCOG00000017921	smarcal1	98	71.995	Hippocampus_comes
ENSSLDG00000007224	SMARCAL1	97	75.421	ENSKMAG00000012023	SMARCAL1	99	75.393	Kryptolebias_marmoratus
ENSSLDG00000007224	SMARCAL1	90	84.615	ENSLBEG00000022915	smarcal1	100	84.615	Labrus_bergylta
ENSSLDG00000007224	SMARCAL1	91	81.637	ENSLBEG00000003493	smarcal1	100	81.637	Labrus_bergylta
ENSSLDG00000007224	SMARCAL1	93	64.046	ENSLOCG00000009637	smarcal1	99	63.679	Lepisosteus_oculatus
ENSSLDG00000007224	SMARCAL1	98	81.909	ENSMAMG00000000828	SMARCAL1	99	81.909	Mastacembelus_armatus
ENSSLDG00000007224	SMARCAL1	99	81.510	ENSMZEG00005007660	SMARCAL1	99	81.400	Maylandia_zebra
ENSSLDG00000007224	SMARCAL1	96	54.022	ENSMGAG00000011658	SMARCAL1	96	54.022	Meleagris_gallopavo
ENSSLDG00000007224	SMARCAL1	87	78.726	ENSMMOG00000003842	smarcal1	94	78.726	Mola_mola
ENSSLDG00000007224	SMARCAL1	100	49.747	ENSMODG00000015544	SMARCAL1	75	59.178	Monodelphis_domestica
ENSSLDG00000007224	SMARCAL1	93	88.143	ENSNBRG00000016273	smarcal1	97	83.133	Neolamprologus_brichardi
ENSSLDG00000007224	SMARCAL1	92	51.587	ENSMEUG00000004395	SMARCAL1	99	51.416	Notamacropus_eugenii
ENSSLDG00000007224	SMARCAL1	99	81.510	ENSONIG00000009036	smarcal1	100	88.158	Oreochromis_niloticus
ENSSLDG00000007224	SMARCAL1	100	72.541	ENSORLG00000016455	SMARCAL1	100	72.000	Oryzias_latipes
ENSSLDG00000007224	SMARCAL1	100	72.727	ENSORLG00020001610	SMARCAL1	100	72.078	Oryzias_latipes_hni
ENSSLDG00000007224	SMARCAL1	100	73.189	ENSORLG00015001865	SMARCAL1	100	72.541	Oryzias_latipes_hsok
ENSSLDG00000007224	SMARCAL1	100	73.268	ENSOMEG00000001845	smarcal1	100	73.268	Oryzias_melastigma
ENSSLDG00000007224	SMARCAL1	100	72.816	ENSPMGG00000019092	SMARCAL1	100	73.031	Periophthalmus_magnuspinnatus
ENSSLDG00000007224	SMARCAL1	79	58.390	ENSPCIG00000022514	SMARCAL1	73	60.423	Phascolarctos_cinereus
ENSSLDG00000007224	SMARCAL1	100	74.078	ENSPFOG00000000560	SMARCAL1	100	74.187	Poecilia_formosa
ENSSLDG00000007224	SMARCAL1	100	74.078	ENSPMEG00000018146	SMARCAL1	100	74.187	Poecilia_mexicana
ENSSLDG00000007224	SMARCAL1	60	85.417	ENSPREG00000009591	SMARCAL1	97	85.417	Poecilia_reticulata
ENSSLDG00000007224	SMARCAL1	100	65.944	ENSPNAG00000014900	smarcal1	95	65.944	Pygocentrus_nattereri
ENSSLDG00000007224	SMARCAL1	99	49.572	ENSSHAG00000013538	SMARCAL1	99	49.572	Sarcophilus_harrisii
ENSSLDG00000007224	SMARCAL1	100	82.359	ENSSMAG00000010427	SMARCAL1	100	82.359	Scophthalmus_maximus
ENSSLDG00000007224	SMARCAL1	97	97.315	ENSSDUG00000017470	SMARCAL1	96	97.315	Seriola_dumerili
ENSSLDG00000007224	SMARCAL1	99	53.440	ENSSPUG00000015369	SMARCAL1	73	64.828	Sphenodon_punctatus
ENSSLDG00000007224	SMARCAL1	83	89.301	ENSSPAG00000003742	smarcal1	97	89.301	Stegastes_partitus
ENSSLDG00000007224	SMARCAL1	75	57.164	ENSSSCG00000035501	SMARCAL1	76	57.266	Sus_scrofa
ENSSLDG00000007224	SMARCAL1	74	62.261	ENSTGUG00000005079	SMARCAL1	99	62.261	Taeniopygia_guttata
ENSSLDG00000007224	SMARCAL1	99	65.939	ENSTRUG00000010701	SMARCAL1	99	65.795	Takifugu_rubripes
ENSSLDG00000007224	SMARCAL1	99	45.079	ENSTTRG00000009001	SMARCAL1	98	44.550	Tursiops_truncatus
ENSSLDG00000007224	SMARCAL1	99	57.636	ENSXETG00000000465	smarcal1	99	57.636	Xenopus_tropicalis