EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000007454 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 10261 bases
Position: chrPEQF01099028.1:191329-201589
Accession: 111661702
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000009374	RRM_1	PF00076.22	1.1e-13	1	1
ENSSLDP00000009385	RRM_1	PF00076.22	1.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000009701	-	2219	-	ENSSLDP00000009374	303 (aa)	-	-
ENSSLDT00000009711	-	2819	XM_023415359	ENSSLDP00000009385	303 (aa)	XP_023271127	-

Gene Model

Click here to download ENSSLDG00000007454's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000007454's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000007454	-	86	86.312	ENSSLDG00000007474	-	92	84.644
ENSSLDG00000007454	-	68	52.133	ENSSLDG00000017872	raly	88	47.191
ENSSLDG00000007454	-	86	47.387	ENSSLDG00000011534	-	95	49.301
ENSSLDG00000007454	-	68	57.273	ENSSLDG00000020603	-	72	57.534

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000007454	-	68	59.242	ENSG00000184672	RALYL	91	77.922	Homo_sapiens
ENSSLDG00000007454	-	87	95.076	ENSAPOG00000006963	hnrnpc	91	94.224	Acanthochromis_polyacanthus
ENSSLDG00000007454	-	83	82.879	ENSACIG00000016568	-	93	77.992	Amphilophus_citrinellus
ENSSLDG00000007454	-	83	95.294	ENSACIG00000000270	-	89	94.318	Amphilophus_citrinellus
ENSSLDG00000007454	-	82	83.794	ENSAOCG00000021616	-	85	82.117	Amphiprion_ocellaris
ENSSLDG00000007454	-	87	94.697	ENSAOCG00000003896	-	91	93.863	Amphiprion_ocellaris
ENSSLDG00000007454	-	87	94.697	ENSAPEG00000001489	-	91	93.863	Amphiprion_percula
ENSSLDG00000007454	-	83	83.658	ENSAPEG00000019962	-	87	81.752	Amphiprion_percula
ENSSLDG00000007454	-	87	95.094	ENSATEG00000011734	-	90	94.245	Anabas_testudineus
ENSSLDG00000007454	-	86	82.707	ENSATEG00000018006	-	78	89.151	Anabas_testudineus
ENSSLDG00000007454	-	68	54.018	ENSAPLG00000015574	RALYL	74	55.455	Anas_platyrhynchos
ENSSLDG00000007454	-	68	53.153	ENSACAG00000028464	RALYL	74	55.000	Anolis_carolinensis
ENSSLDG00000007454	-	86	50.376	ENSANAG00000023383	RALYL	92	50.943	Aotus_nancymaae
ENSSLDG00000007454	-	87	91.321	ENSACLG00000013636	-	93	92.446	Astatotilapia_calliptera
ENSSLDG00000007454	-	87	80.741	ENSACLG00000005707	-	91	82.222	Astatotilapia_calliptera
ENSSLDG00000007454	-	87	91.698	ENSACLG00000000995	-	91	92.446	Astatotilapia_calliptera
ENSSLDG00000007454	-	68	78.469	ENSAMXG00000042946	hnrnpc	97	81.152	Astyanax_mexicanus
ENSSLDG00000007454	-	85	80.695	ENSAMXG00000034915	zgc:55733	91	80.916	Astyanax_mexicanus
ENSSLDG00000007454	-	86	50.000	ENSCJAG00000000402	RALYL	92	50.566	Callithrix_jacchus
ENSSLDG00000007454	-	68	54.709	ENSCPOG00000012314	RALYL	74	57.273	Cavia_porcellus
ENSSLDG00000007454	-	86	50.752	ENSCCAG00000025003	RALYL	75	77.922	Cebus_capucinus
ENSSLDG00000007454	-	68	59.242	ENSCATG00000042145	RALYL	92	49.265	Cercocebus_atys
ENSSLDG00000007454	-	68	54.709	ENSCLAG00000005228	RALYL	74	57.273	Chinchilla_lanigera
ENSSLDG00000007454	-	69	52.655	ENSCHOG00000013228	RALYL	74	51.802	Choloepus_hoffmanni
ENSSLDG00000007454	-	68	59.242	ENSCANG00000039144	RALYL	92	49.265	Colobus_angolensis_palliatus
ENSSLDG00000007454	-	68	54.464	ENSCGRG00001009241	Ralyl	74	55.909	Cricetulus_griseus_chok1gshd
ENSSLDG00000007454	-	85	77.395	ENSCSEG00000021349	-	84	77.491	Cynoglossus_semilaevis
ENSSLDG00000007454	-	71	82.028	ENSCSEG00000019769	-	72	81.690	Cynoglossus_semilaevis
ENSSLDG00000007454	-	89	72.794	ENSCVAG00000002797	-	89	70.076	Cyprinodon_variegatus
ENSSLDG00000007454	-	82	85.433	ENSCVAG00000016981	-	85	78.777	Cyprinodon_variegatus
ENSSLDG00000007454	-	79	80.579	ENSDARG00000053810	hnrnpc	82	79.545	Danio_rerio
ENSSLDG00000007454	-	85	83.012	ENSDARG00000103845	zgc:55733	94	83.398	Danio_rerio
ENSSLDG00000007454	-	68	54.911	ENSDORG00000003721	Ralyl	74	56.364	Dipodomys_ordii
ENSSLDG00000007454	-	53	56.322	ENSETEG00000014028	RALYL	81	60.000	Echinops_telfairi
ENSSLDG00000007454	-	69	47.748	ENSEBUG00000012363	hnrnpc	65	47.059	Eptatretus_burgeri
ENSSLDG00000007454	-	73	49.782	ENSEBUG00000006049	RALYL	92	44.610	Eptatretus_burgeri
ENSSLDG00000007454	-	73	52.521	ENSEEUG00000007202	RALYL	80	54.077	Erinaceus_europaeus
ENSSLDG00000007454	-	83	82.963	ENSELUG00000007714	-	94	82.014	Esox_lucius
ENSSLDG00000007454	-	86	83.582	ENSELUG00000004132	-	91	84.015	Esox_lucius
ENSSLDG00000007454	-	69	57.209	ENSFALG00000008647	RALYL	96	58.019	Ficedula_albicollis
ENSSLDG00000007454	-	92	86.525	ENSFHEG00000003605	-	92	86.022	Fundulus_heteroclitus
ENSSLDG00000007454	-	83	80.443	ENSFHEG00000007278	-	88	75.601	Fundulus_heteroclitus
ENSSLDG00000007454	-	68	57.746	ENSGALG00000036938	RALYL	73	55.455	Gallus_gallus
ENSSLDG00000007454	-	83	82.101	ENSGAFG00000020992	-	89	79.710	Gambusia_affinis
ENSSLDG00000007454	-	92	85.461	ENSGAFG00000020486	-	91	85.663	Gambusia_affinis
ENSSLDG00000007454	-	84	83.846	ENSGACG00000017772	-	98	82.946	Gasterosteus_aculeatus
ENSSLDG00000007454	-	73	75.546	ENSGACG00000018932	-	87	77.315	Gasterosteus_aculeatus
ENSSLDG00000007454	-	68	59.242	ENSGGOG00000000841	RALYL	92	49.265	Gorilla_gorilla
ENSSLDG00000007454	-	87	81.111	ENSHBUG00000010527	-	85	81.985	Haplochromis_burtoni
ENSSLDG00000007454	-	87	92.075	ENSHBUG00000018342	-	91	92.806	Haplochromis_burtoni
ENSSLDG00000007454	-	68	54.260	ENSHGLG00000004866	RALYL	74	56.818	Heterocephalus_glaber_female
ENSSLDG00000007454	-	68	54.260	ENSHGLG00100017480	RALYL	74	56.818	Heterocephalus_glaber_male
ENSSLDG00000007454	-	84	80.443	ENSHCOG00000012333	hnrnpc	95	76.792	Hippocampus_comes
ENSSLDG00000007454	-	87	80.228	ENSIPUG00000008666	zgc:55733	93	84.360	Ictalurus_punctatus
ENSSLDG00000007454	-	84	80.620	ENSIPUG00000011271	hnrnpc	97	82.883	Ictalurus_punctatus
ENSSLDG00000007454	-	68	54.464	ENSSTOG00000012583	RALYL	75	55.909	Ictidomys_tridecemlineatus
ENSSLDG00000007454	-	92	89.286	ENSKMAG00000011170	-	89	88.809	Kryptolebias_marmoratus
ENSSLDG00000007454	-	82	81.102	ENSKMAG00000018265	-	84	80.515	Kryptolebias_marmoratus
ENSSLDG00000007454	-	88	82.014	ENSLBEG00000024418	-	89	80.515	Labrus_bergylta
ENSSLDG00000007454	-	88	85.502	ENSLBEG00000006979	-	89	84.791	Labrus_bergylta
ENSSLDG00000007454	-	85	82.061	ENSLBEG00000006193	-	84	81.784	Labrus_bergylta
ENSSLDG00000007454	-	86	71.852	ENSLOCG00000002560	hnrnpc	92	74.721	Lepisosteus_oculatus
ENSSLDG00000007454	-	68	59.242	ENSMNEG00000033288	RALYL	92	49.265	Macaca_nemestrina
ENSSLDG00000007454	-	68	59.242	ENSMLEG00000038284	RALYL	92	49.265	Mandrillus_leucophaeus
ENSSLDG00000007454	-	87	92.830	ENSMAMG00000012236	-	90	93.165	Mastacembelus_armatus
ENSSLDG00000007454	-	86	81.203	ENSMAMG00000008033	-	94	80.586	Mastacembelus_armatus
ENSSLDG00000007454	-	87	80.741	ENSMZEG00005024249	-	85	82.222	Maylandia_zebra
ENSSLDG00000007454	-	87	91.698	ENSMZEG00005020460	-	91	92.446	Maylandia_zebra
ENSSLDG00000007454	-	68	54.464	ENSMAUG00000015149	Ralyl	74	55.909	Mesocricetus_auratus
ENSSLDG00000007454	-	68	58.019	ENSMICG00000005558	RALYL	78	77.922	Microcebus_murinus
ENSSLDG00000007454	-	68	54.464	ENSMOCG00000017371	Ralyl	74	55.909	Microtus_ochrogaster
ENSSLDG00000007454	-	86	91.221	ENSMMOG00000021465	-	93	93.585	Mola_mola
ENSSLDG00000007454	-	82	82.731	ENSMMOG00000019520	-	91	81.618	Mola_mola
ENSSLDG00000007454	-	83	82.213	ENSMALG00000007520	-	88	82.443	Monopterus_albus
ENSSLDG00000007454	-	86	84.733	ENSMALG00000014623	-	84	83.019	Monopterus_albus
ENSSLDG00000007454	-	68	54.018	ENSMUSG00000039717	Ralyl	91	76.623	Mus_musculus
ENSSLDG00000007454	-	68	55.804	ENSMPUG00000010724	RALYL	74	55.000	Mustela_putorius_furo
ENSSLDG00000007454	-	68	54.464	ENSNGAG00000013375	Ralyl	74	55.909	Nannospalax_galili
ENSSLDG00000007454	-	87	81.111	ENSNBRG00000015676	-	93	75.188	Neolamprologus_brichardi
ENSSLDG00000007454	-	84	92.157	ENSNBRG00000004912	-	87	92.776	Neolamprologus_brichardi
ENSSLDG00000007454	-	68	59.242	ENSNLEG00000002702	RALYL	88	49.265	Nomascus_leucogenys
ENSSLDG00000007454	-	58	49.741	ENSOPRG00000013650	-	98	48.744	Ochotona_princeps
ENSSLDG00000007454	-	73	52.941	ENSODEG00000001012	RALYL	78	54.274	Octodon_degus
ENSSLDG00000007454	-	87	81.111	ENSONIG00000018350	-	85	81.985	Oreochromis_niloticus
ENSSLDG00000007454	-	86	92.776	ENSONIG00000007859	-	99	87.413	Oreochromis_niloticus
ENSSLDG00000007454	-	87	80.451	ENSORLG00000009999	-	91	79.928	Oryzias_latipes
ENSSLDG00000007454	-	82	81.226	ENSORLG00000003144	-	83	81.588	Oryzias_latipes
ENSSLDG00000007454	-	87	80.075	ENSORLG00020018228	hnrnpc	91	79.570	Oryzias_latipes_hni
ENSSLDG00000007454	-	82	81.226	ENSORLG00015009460	-	83	81.588	Oryzias_latipes_hsok
ENSSLDG00000007454	-	87	80.451	ENSORLG00015019755	-	91	79.928	Oryzias_latipes_hsok
ENSSLDG00000007454	-	82	83.071	ENSOMEG00000022665	-	84	83.333	Oryzias_melastigma
ENSSLDG00000007454	-	87	79.775	ENSOMEG00000020488	-	91	79.643	Oryzias_melastigma
ENSSLDG00000007454	-	68	59.242	ENSPPAG00000038705	RALYL	92	49.265	Pan_paniscus
ENSSLDG00000007454	-	68	59.813	ENSPPRG00000018612	RALYL	73	59.048	Panthera_pardus
ENSSLDG00000007454	-	68	59.813	ENSPTIG00000020331	RALYL	73	59.048	Panthera_tigris_altaica
ENSSLDG00000007454	-	68	59.242	ENSPTRG00000020381	RALYL	92	49.265	Pan_troglodytes
ENSSLDG00000007454	-	68	59.242	ENSPANG00000029305	RALYL	92	49.265	Papio_anubis
ENSSLDG00000007454	-	86	79.630	ENSPKIG00000022837	-	84	84.644	Paramormyrops_kingsleyae
ENSSLDG00000007454	-	91	82.105	ENSPKIG00000008592	-	85	82.657	Paramormyrops_kingsleyae
ENSSLDG00000007454	-	68	54.018	ENSPSIG00000011135	RALYL	73	55.455	Pelodiscus_sinensis
ENSSLDG00000007454	-	72	87.558	ENSPMGG00000013144	-	81	87.324	Periophthalmus_magnuspinnatus
ENSSLDG00000007454	-	67	80.000	ENSPMGG00000017774	-	92	66.222	Periophthalmus_magnuspinnatus
ENSSLDG00000007454	-	68	54.464	ENSPEMG00000016447	Ralyl	74	55.909	Peromyscus_maniculatus_bairdii
ENSSLDG00000007454	-	69	54.148	ENSPMAG00000002407	RALYL	96	53.778	Petromyzon_marinus
ENSSLDG00000007454	-	92	86.926	ENSPFOG00000001583	-	91	87.143	Poecilia_formosa
ENSSLDG00000007454	-	82	82.213	ENSPFOG00000002643	-	84	80.657	Poecilia_formosa
ENSSLDG00000007454	-	82	82.213	ENSPLAG00000000061	-	84	80.657	Poecilia_latipinna
ENSSLDG00000007454	-	92	85.816	ENSPLAG00000015305	-	91	86.022	Poecilia_latipinna
ENSSLDG00000007454	-	82	81.818	ENSPMEG00000016524	-	84	82.117	Poecilia_mexicana
ENSSLDG00000007454	-	92	86.879	ENSPMEG00000004802	-	91	86.738	Poecilia_mexicana
ENSSLDG00000007454	-	92	86.170	ENSPREG00000007928	-	91	86.380	Poecilia_reticulata
ENSSLDG00000007454	-	82	81.423	ENSPREG00000001852	-	91	79.636	Poecilia_reticulata
ENSSLDG00000007454	-	73	51.477	ENSPVAG00000010821	RALYL	78	52.991	Pteropus_vampyrus
ENSSLDG00000007454	-	87	81.111	ENSPNYG00000003747	-	91	81.985	Pundamilia_nyererei
ENSSLDG00000007454	-	84	91.373	ENSPNYG00000020293	-	90	90.875	Pundamilia_nyererei
ENSSLDG00000007454	-	81	80.488	ENSPNAG00000015686	hnrnpc	88	81.609	Pygocentrus_nattereri
ENSSLDG00000007454	-	87	73.704	ENSPNAG00000019200	zgc:55733	85	75.281	Pygocentrus_nattereri
ENSSLDG00000007454	-	68	59.242	ENSRROG00000023925	RALYL	80	75.949	Rhinopithecus_roxellana
ENSSLDG00000007454	-	84	79.087	ENSSFOG00015012015	-	96	75.862	Scleropages_formosus
ENSSLDG00000007454	-	83	80.460	ENSSFOG00015012924	-	80	97.468	Scleropages_formosus
ENSSLDG00000007454	-	87	90.909	ENSSMAG00000013592	-	89	89.964	Scophthalmus_maximus
ENSSLDG00000007454	-	84	80.916	ENSSMAG00000011147	-	96	75.849	Scophthalmus_maximus
ENSSLDG00000007454	-	100	94.637	ENSSDUG00000001723	-	100	94.637	Seriola_dumerili
ENSSLDG00000007454	-	86	86.312	ENSSDUG00000006730	-	84	84.644	Seriola_dumerili
ENSSLDG00000007454	-	92	95.699	ENSSPAG00000023204	-	91	96.029	Stegastes_partitus
ENSSLDG00000007454	-	86	83.712	ENSSPAG00000013996	-	85	83.026	Stegastes_partitus
ENSSLDG00000007454	-	71	52.361	ENSTGUG00000011689	RALYL	78	53.712	Taeniopygia_guttata
ENSSLDG00000007454	-	86	86.154	ENSTRUG00000020158	-	87	88.973	Takifugu_rubripes
ENSSLDG00000007454	-	83	84.170	ENSTNIG00000007427	-	87	85.075	Tetraodon_nigroviridis
ENSSLDG00000007454	-	83	81.102	ENSTNIG00000000334	-	97	78.788	Tetraodon_nigroviridis
ENSSLDG00000007454	-	69	49.561	ENSTBEG00000005551	RALYL	86	48.035	Tupaia_belangeri
ENSSLDG00000007454	-	73	50.633	ENSTTRG00000015762	RALYL	78	51.754	Tursiops_truncatus
ENSSLDG00000007454	-	68	53.774	ENSVPAG00000008501	RALYL	73	54.545	Vicugna_pacos
ENSSLDG00000007454	-	87	80.755	ENSXCOG00000006552	-	86	79.924	Xiphophorus_couchianus
ENSSLDG00000007454	-	51	89.571	ENSXCOG00000019434	-	71	88.554	Xiphophorus_couchianus
ENSSLDG00000007454	-	82	81.423	ENSXMAG00000022849	-	89	79.273	Xiphophorus_maculatus
ENSSLDG00000007454	-	92	86.170	ENSXMAG00000009333	-	91	85.663	Xiphophorus_maculatus