EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000007608 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 9273 bases
Position: chrPEQF01099012.1:60252-69524
Accession: 111661083
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000009590	DEAD	PF00270.29	3.8e-41	1	1
ENSSLDP00000009617	DEAD	PF00270.29	8.6e-25	1	2
ENSSLDP00000009617	DEAD	PF00270.29	8.6e-25	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000009954	-	1326	-	ENSSLDP00000009617	441 (aa)	-	-
ENSSLDT00000009926	-	5742	XM_023414549	ENSSLDP00000009590	490 (aa)	XP_023270317	UPI000BBE0BF2

Gene Model

Click here to download ENSSLDG00000007608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000007608's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000007608	-	71	40.741	ENSSLDG00000018297	-	63	30.788
ENSSLDG00000007608	-	65	30.395	ENSSLDG00000003692	ddx18	58	30.395
ENSSLDG00000007608	-	72	31.233	ENSSLDG00000003614	DDX5	57	31.233
ENSSLDG00000007608	-	71	40.741	ENSSLDG00000002762	-	58	30.549
ENSSLDG00000007608	-	96	88.298	ENSSLDG00000000132	ddx61	99	86.749
ENSSLDG00000007608	-	74	31.818	ENSSLDG00000006958	ddx49	83	30.479
ENSSLDG00000007608	-	61	30.031	ENSSLDG00000015312	ddx4	80	30.031
ENSSLDG00000007608	-	74	35.714	ENSSLDG00000017107	zgc:193690	76	35.714
ENSSLDG00000007608	-	76	31.643	ENSSLDG00000010453	ddx23	52	31.655
ENSSLDG00000007608	-	80	31.592	ENSSLDG00000018142	ddx47	80	31.592
ENSSLDG00000007608	-	70	32.486	ENSSLDG00000017225	ddx43	50	32.486
ENSSLDG00000007608	-	78	36.010	ENSSLDG00000015763	ddx39b	95	35.545
ENSSLDG00000007608	-	71	32.222	ENSSLDG00000008526	-	69	30.721
ENSSLDG00000007608	-	69	43.333	ENSSLDG00000025345	ddx1	58	43.333
ENSSLDG00000007608	-	69	34.402	ENSSLDG00000002882	-	99	34.402
ENSSLDG00000007608	-	75	40.054	ENSSLDG00000015202	eif4a2	90	40.054
ENSSLDG00000007608	-	83	33.495	ENSSLDG00000006386	-	99	33.495
ENSSLDG00000007608	-	69	37.059	ENSSLDG00000010112	eif4a3	86	37.059
ENSSLDG00000007608	-	75	39.247	ENSSLDG00000011941	eif4a1b	92	39.247
ENSSLDG00000007608	-	67	32.743	ENSSLDG00000024923	-	54	32.578
ENSSLDG00000007608	-	71	35.714	ENSSLDG00000009584	ddx19	73	35.714
ENSSLDG00000007608	-	75	30.469	ENSSLDG00000024131	ddx5	62	30.469
ENSSLDG00000007608	-	97	82.328	ENSSLDG00000006167	ddx6	99	82.573
ENSSLDG00000007608	-	80	36.090	ENSSLDG00000017643	DDX39A	93	36.090

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000007608	-	98	86.639	ENSAPOG00000014829	ddx61	98	86.639	Acanthochromis_polyacanthus
ENSSLDG00000007608	-	77	98.400	ENSAPOG00000023627	-	95	98.400	Acanthochromis_polyacanthus
ENSSLDG00000007608	-	100	89.796	ENSACIG00000018355	-	100	89.796	Amphilophus_citrinellus
ENSSLDG00000007608	-	100	97.143	ENSAOCG00000006269	-	100	97.143	Amphiprion_ocellaris
ENSSLDG00000007608	-	98	87.683	ENSAOCG00000007627	ddx61	98	87.683	Amphiprion_ocellaris
ENSSLDG00000007608	-	100	97.143	ENSAPEG00000021368	-	100	97.143	Amphiprion_percula
ENSSLDG00000007608	-	98	87.683	ENSAPEG00000007293	ddx61	98	87.683	Amphiprion_percula
ENSSLDG00000007608	-	100	97.143	ENSAPEG00000020642	-	100	97.143	Amphiprion_percula
ENSSLDG00000007608	-	97	87.553	ENSATEG00000011302	ddx61	98	87.553	Anabas_testudineus
ENSSLDG00000007608	-	100	95.918	ENSATEG00000005424	-	100	95.918	Anabas_testudineus
ENSSLDG00000007608	-	100	96.531	ENSACLG00000003260	-	100	96.531	Astatotilapia_calliptera
ENSSLDG00000007608	-	98	86.749	ENSACLG00000027620	ddx61	99	86.749	Astatotilapia_calliptera
ENSSLDG00000007608	-	97	87.002	ENSAMXG00000032542	ddx61	99	86.242	Astyanax_mexicanus
ENSSLDG00000007608	-	99	87.273	ENSAMXG00000033980	-	100	87.273	Astyanax_mexicanus
ENSSLDG00000007608	-	100	95.510	ENSCSEG00000009893	-	100	95.510	Cynoglossus_semilaevis
ENSSLDG00000007608	-	100	92.041	ENSCVAG00000011006	-	100	92.041	Cyprinodon_variegatus
ENSSLDG00000007608	-	99	84.836	ENSDARG00000018425	ddx61	99	84.836	Danio_rerio
ENSSLDG00000007608	-	98	88.613	ENSELUG00000020545	ddx61	99	88.613	Esox_lucius
ENSSLDG00000007608	-	99	90.020	ENSELUG00000022538	-	99	90.020	Esox_lucius
ENSSLDG00000007608	-	100	92.449	ENSFHEG00000015487	-	100	92.449	Fundulus_heteroclitus
ENSSLDG00000007608	-	96	88.655	ENSGMOG00000013762	ddx61	99	87.967	Gadus_morhua
ENSSLDG00000007608	-	66	88.110	ENSGMOG00000003561	-	100	88.788	Gadus_morhua
ENSSLDG00000007608	-	100	91.853	ENSGAFG00000015865	-	100	91.853	Gambusia_affinis
ENSSLDG00000007608	-	98	85.020	ENSGACG00000003401	ddx61	100	85.020	Gasterosteus_aculeatus
ENSSLDG00000007608	-	99	95.868	ENSGACG00000002413	-	100	95.868	Gasterosteus_aculeatus
ENSSLDG00000007608	-	98	86.957	ENSHBUG00000017832	ddx61	99	86.957	Haplochromis_burtoni
ENSSLDG00000007608	-	100	96.531	ENSHBUG00000017033	-	100	96.531	Haplochromis_burtoni
ENSSLDG00000007608	-	97	84.244	ENSHCOG00000008184	ddx61	97	84.244	Hippocampus_comes
ENSSLDG00000007608	-	100	91.020	ENSHCOG00000012238	-	100	91.020	Hippocampus_comes
ENSSLDG00000007608	-	96	87.949	ENSIPUG00000008367	-	100	86.392	Ictalurus_punctatus
ENSSLDG00000007608	-	96	86.141	ENSIPUG00000012823	DDX6	99	84.855	Ictalurus_punctatus
ENSSLDG00000007608	-	100	94.898	ENSKMAG00000007213	-	100	94.898	Kryptolebias_marmoratus
ENSSLDG00000007608	-	97	88.421	ENSLBEG00000001740	ddx61	98	88.421	Labrus_bergylta
ENSSLDG00000007608	-	100	95.089	ENSLBEG00000016890	-	100	95.089	Labrus_bergylta
ENSSLDG00000007608	-	97	84.058	ENSLACG00000015214	ddx61	100	84.058	Latimeria_chalumnae
ENSSLDG00000007608	-	97	51.494	ENSLOCG00000004352	ddx61	97	51.494	Lepisosteus_oculatus
ENSSLDG00000007608	-	97	87.605	ENSMAMG00000005321	ddx61	97	87.605	Mastacembelus_armatus
ENSSLDG00000007608	-	100	96.939	ENSMAMG00000005559	-	100	96.939	Mastacembelus_armatus
ENSSLDG00000007608	-	100	96.531	ENSMZEG00005026268	-	100	96.531	Maylandia_zebra
ENSSLDG00000007608	-	98	86.957	ENSMZEG00005003556	ddx61	99	86.957	Maylandia_zebra
ENSSLDG00000007608	-	100	96.825	ENSMMOG00000013694	-	100	96.825	Mola_mola
ENSSLDG00000007608	-	96	86.383	ENSMMOG00000007415	ddx61	97	86.383	Mola_mola
ENSSLDG00000007608	-	72	76.487	ENSMMOG00000008825	-	92	76.487	Mola_mola
ENSSLDG00000007608	-	97	75.833	ENSMALG00000013776	ddx61	96	75.833	Monopterus_albus
ENSSLDG00000007608	-	100	95.714	ENSMALG00000013817	-	100	95.714	Monopterus_albus
ENSSLDG00000007608	-	100	90.000	ENSNBRG00000015075	-	100	90.000	Neolamprologus_brichardi
ENSSLDG00000007608	-	98	80.208	ENSNBRG00000015800	ddx61	99	80.208	Neolamprologus_brichardi
ENSSLDG00000007608	-	100	96.735	ENSONIG00000013748	-	100	96.735	Oreochromis_niloticus
ENSSLDG00000007608	-	98	87.265	ENSONIG00000011418	ddx61	99	87.265	Oreochromis_niloticus
ENSSLDG00000007608	-	100	93.878	ENSORLG00000009178	-	100	93.878	Oryzias_latipes
ENSSLDG00000007608	-	100	93.878	ENSORLG00020015515	-	100	93.878	Oryzias_latipes_hni
ENSSLDG00000007608	-	100	93.673	ENSORLG00015006764	-	100	93.673	Oryzias_latipes_hsok
ENSSLDG00000007608	-	96	96.226	ENSOMEG00000022326	-	99	96.226	Oryzias_melastigma
ENSSLDG00000007608	-	97	90.147	ENSPKIG00000024264	ddx61	98	89.627	Paramormyrops_kingsleyae
ENSSLDG00000007608	-	100	83.130	ENSPMGG00000013355	-	100	83.130	Periophthalmus_magnuspinnatus
ENSSLDG00000007608	-	100	92.449	ENSPFOG00000005750	-	100	92.449	Poecilia_formosa
ENSSLDG00000007608	-	100	92.449	ENSPLAG00000000403	-	100	92.449	Poecilia_latipinna
ENSSLDG00000007608	-	100	92.245	ENSPMEG00000023737	-	100	92.245	Poecilia_mexicana
ENSSLDG00000007608	-	98	80.769	ENSPNYG00000015045	ddx61	99	80.769	Pundamilia_nyererei
ENSSLDG00000007608	-	100	96.531	ENSPNYG00000003986	-	100	96.531	Pundamilia_nyererei
ENSSLDG00000007608	-	99	88.641	ENSPNAG00000008742	-	100	88.641	Pygocentrus_nattereri
ENSSLDG00000007608	-	97	87.002	ENSPNAG00000024072	ddx61	99	87.002	Pygocentrus_nattereri
ENSSLDG00000007608	-	96	89.263	ENSSFOG00015021404	ddx61	99	87.576	Scleropages_formosus
ENSSLDG00000007608	-	100	95.714	ENSSMAG00000001793	-	100	95.714	Scophthalmus_maximus
ENSSLDG00000007608	-	96	87.447	ENSSMAG00000006591	ddx61	97	86.765	Scophthalmus_maximus
ENSSLDG00000007608	-	100	100.000	ENSSDUG00000007530	-	100	100.000	Seriola_dumerili
ENSSLDG00000007608	-	96	88.298	ENSSDUG00000009713	ddx61	99	86.749	Seriola_dumerili
ENSSLDG00000007608	-	96	88.913	ENSSPAG00000001578	ddx61	98	87.866	Stegastes_partitus
ENSSLDG00000007608	-	100	98.163	ENSSPAG00000013878	-	100	98.163	Stegastes_partitus
ENSSLDG00000007608	-	99	92.229	ENSTRUG00000012432	-	99	92.229	Takifugu_rubripes
ENSSLDG00000007608	-	98	92.100	ENSTNIG00000003560	-	100	92.100	Tetraodon_nigroviridis
ENSSLDG00000007608	-	100	91.855	ENSXCOG00000001406	-	100	91.855	Xiphophorus_couchianus
ENSSLDG00000007608	-	100	92.261	ENSXMAG00000016090	-	100	92.261	Xiphophorus_maculatus