EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000007928 (Gene tree)
Gene ID: -
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 18058 bases
Position: chrPEQF01096590.1:94944-113001
Accession: 111649968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000010140	ResIII	PF04851.15	1.9e-08	1	1
ENSSLDP00000010061	ResIII	PF04851.15	2.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000010426	-	7535	XM_023399675	ENSSLDP00000010061	1405 (aa)	XP_023255443	UPI000C6F6C7C
ENSSLDT00000010507	-	4041	-	ENSSLDP00000010140	1346 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000007928's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000007928's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000007928	sbno1	73	63.765	ENSSLDG00000004623	si:ch73-63e15.2	63	63.765

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000007928	sbno1	99	75.333	ENSG00000139697	SBNO1	99	75.333	Homo_sapiens
ENSSLDG00000007928	sbno1	86	95.009	ENSAPOG00000003196	sbno1	99	95.009	Acanthochromis_polyacanthus
ENSSLDG00000007928	sbno1	99	75.664	ENSAMEG00000015151	SBNO1	99	75.524	Ailuropoda_melanoleuca
ENSSLDG00000007928	sbno1	100	88.277	ENSACIG00000008088	sbno1	99	88.489	Amphilophus_citrinellus
ENSSLDG00000007928	sbno1	100	93.381	ENSAOCG00000014859	sbno1	99	93.808	Amphiprion_ocellaris
ENSSLDG00000007928	sbno1	100	93.310	ENSAPEG00000006069	sbno1	99	93.737	Amphiprion_percula
ENSSLDG00000007928	sbno1	100	94.947	ENSATEG00000006667	sbno1	100	94.947	Anabas_testudineus
ENSSLDG00000007928	sbno1	98	76.054	ENSAPLG00000015674	SBNO1	99	76.305	Anas_platyrhynchos
ENSSLDG00000007928	sbno1	98	74.982	ENSACAG00000015441	SBNO1	88	74.526	Anolis_carolinensis
ENSSLDG00000007928	sbno1	95	84.574	ENSANAG00000029958	-	99	84.268	Aotus_nancymaae
ENSSLDG00000007928	sbno1	100	87.331	ENSACLG00000024913	sbno1	100	87.117	Astatotilapia_calliptera
ENSSLDG00000007928	sbno1	100	82.778	ENSAMXG00000019473	sbno1	100	82.991	Astyanax_mexicanus
ENSSLDG00000007928	sbno1	100	75.770	ENSBTAG00000020505	SBNO1	99	75.770	Bos_taurus
ENSSLDG00000007928	sbno1	99	75.333	ENSCJAG00000016599	SBNO1	99	75.263	Callithrix_jacchus
ENSSLDG00000007928	sbno1	99	75.647	ENSCAFG00000007503	SBNO1	99	77.639	Canis_familiaris
ENSSLDG00000007928	sbno1	95	82.491	ENSCAFG00020015363	SBNO1	99	82.491	Canis_lupus_dingo
ENSSLDG00000007928	sbno1	95	84.657	ENSCHIG00000008382	SBNO1	99	84.657	Capra_hircus
ENSSLDG00000007928	sbno1	99	75.473	ENSTSYG00000012749	SBNO1	99	78.080	Carlito_syrichta
ENSSLDG00000007928	sbno1	90	84.810	ENSCAPG00000000384	SBNO1	99	84.810	Cavia_aperea
ENSSLDG00000007928	sbno1	95	84.810	ENSCPOG00000008109	SBNO1	99	84.810	Cavia_porcellus
ENSSLDG00000007928	sbno1	99	71.198	ENSCCAG00000035316	SBNO1	99	73.285	Cebus_capucinus
ENSSLDG00000007928	sbno1	91	84.201	ENSCATG00000008239	SBNO1	99	84.201	Cercocebus_atys
ENSSLDG00000007928	sbno1	95	84.810	ENSCLAG00000008995	SBNO1	99	84.810	Chinchilla_lanigera
ENSSLDG00000007928	sbno1	84	81.417	ENSCSAG00000002064	SBNO1	99	81.640	Chlorocebus_sabaeus
ENSSLDG00000007928	sbno1	98	75.454	ENSCHOG00000008814	SBNO1	96	73.066	Choloepus_hoffmanni
ENSSLDG00000007928	sbno1	98	75.376	ENSCPBG00000025968	SBNO1	99	75.353	Chrysemys_picta_bellii
ENSSLDG00000007928	sbno1	99	71.969	ENSCANG00000042688	-	99	71.829	Colobus_angolensis_palliatus
ENSSLDG00000007928	sbno1	95	83.243	ENSCGRG00001017470	Sbno1	99	83.243	Cricetulus_griseus_chok1gshd
ENSSLDG00000007928	sbno1	95	83.243	ENSCGRG00000004756	Sbno1	99	83.243	Cricetulus_griseus_crigri
ENSSLDG00000007928	sbno1	100	92.456	ENSCSEG00000011919	sbno1	100	92.456	Cynoglossus_semilaevis
ENSSLDG00000007928	sbno1	100	91.542	ENSCVAG00000007038	sbno1	100	91.613	Cyprinodon_variegatus
ENSSLDG00000007928	sbno1	100	82.766	ENSDARG00000099080	sbno1	100	83.546	Danio_rerio
ENSSLDG00000007928	sbno1	99	78.476	ENSDNOG00000017147	SBNO1	96	78.476	Dasypus_novemcinctus
ENSSLDG00000007928	sbno1	99	73.057	ENSDORG00000015261	Sbno1	99	72.985	Dipodomys_ordii
ENSSLDG00000007928	sbno1	93	72.642	ENSETEG00000005620	SBNO1	93	72.642	Echinops_telfairi
ENSSLDG00000007928	sbno1	75	61.439	ENSEBUG00000013823	sbno1	93	60.849	Eptatretus_burgeri
ENSSLDG00000007928	sbno1	51	72.476	ENSEASG00005012595	-	92	72.891	Equus_asinus_asinus
ENSSLDG00000007928	sbno1	99	75.683	ENSECAG00000006127	SBNO1	99	76.139	Equus_caballus
ENSSLDG00000007928	sbno1	81	78.142	ENSEEUG00000003793	SBNO1	82	78.142	Erinaceus_europaeus
ENSSLDG00000007928	sbno1	98	88.164	ENSELUG00000002886	sbno1	99	84.300	Esox_lucius
ENSSLDG00000007928	sbno1	99	75.753	ENSFCAG00000015331	SBNO1	99	75.613	Felis_catus
ENSSLDG00000007928	sbno1	98	75.911	ENSFALG00000009273	SBNO1	99	76.164	Ficedula_albicollis
ENSSLDG00000007928	sbno1	95	82.065	ENSFDAG00000014232	SBNO1	99	82.065	Fukomys_damarensis
ENSSLDG00000007928	sbno1	100	90.832	ENSFHEG00000007360	sbno1	100	91.045	Fundulus_heteroclitus
ENSSLDG00000007928	sbno1	94	86.617	ENSGMOG00000018229	sbno1	99	86.466	Gadus_morhua
ENSSLDG00000007928	sbno1	88	75.674	ENSGALG00000003392	SBNO1	99	76.175	Gallus_gallus
ENSSLDG00000007928	sbno1	100	91.400	ENSGAFG00000003960	sbno1	100	91.329	Gambusia_affinis
ENSSLDG00000007928	sbno1	94	90.916	ENSGACG00000015633	sbno1	99	90.916	Gasterosteus_aculeatus
ENSSLDG00000007928	sbno1	95	86.667	ENSGAGG00000001065	SBNO1	99	85.481	Gopherus_agassizii
ENSSLDG00000007928	sbno1	95	84.629	ENSGGOG00000015000	SBNO1	99	84.629	Gorilla_gorilla
ENSSLDG00000007928	sbno1	100	80.922	ENSHBUG00000011910	sbno1	100	80.355	Haplochromis_burtoni
ENSSLDG00000007928	sbno1	95	85.118	ENSHGLG00000014165	-	99	84.810	Heterocephalus_glaber_female
ENSSLDG00000007928	sbno1	91	93.465	ENSHCOG00000003246	sbno1	95	93.465	Hippocampus_comes
ENSSLDG00000007928	sbno1	100	83.227	ENSIPUG00000015830	Sbno1	98	83.861	Ictalurus_punctatus
ENSSLDG00000007928	sbno1	95	84.657	ENSSTOG00000023221	SBNO1	99	84.657	Ictidomys_tridecemlineatus
ENSSLDG00000007928	sbno1	95	80.866	ENSJJAG00000001741	Sbno1	99	80.866	Jaculus_jaculus
ENSSLDG00000007928	sbno1	100	92.679	ENSKMAG00000009696	sbno1	100	92.679	Kryptolebias_marmoratus
ENSSLDG00000007928	sbno1	100	92.045	ENSLBEG00000007623	sbno1	100	92.259	Labrus_bergylta
ENSSLDG00000007928	sbno1	100	72.285	ENSLACG00000017227	SBNO1	99	75.358	Latimeria_chalumnae
ENSSLDG00000007928	sbno1	100	81.703	ENSLOCG00000005725	sbno1	97	81.703	Lepisosteus_oculatus
ENSSLDG00000007928	sbno1	99	75.403	ENSLAFG00000002135	SBNO1	99	75.473	Loxodonta_africana
ENSSLDG00000007928	sbno1	95	81.250	ENSMFAG00000031429	SBNO1	99	81.250	Macaca_fascicularis
ENSSLDG00000007928	sbno1	95	81.250	ENSMMUG00000011496	SBNO1	99	81.250	Macaca_mulatta
ENSSLDG00000007928	sbno1	95	84.477	ENSMLEG00000033260	SBNO1	99	84.477	Mandrillus_leucophaeus
ENSSLDG00000007928	sbno1	100	93.390	ENSMAMG00000005473	sbno1	100	93.603	Mastacembelus_armatus
ENSSLDG00000007928	sbno1	98	76.092	ENSMGAG00000003274	SBNO1	99	76.271	Meleagris_gallopavo
ENSSLDG00000007928	sbno1	50	73.894	ENSMAUG00000004834	-	98	74.037	Mesocricetus_auratus
ENSSLDG00000007928	sbno1	95	81.670	ENSMICG00000006573	-	99	81.374	Microcebus_murinus
ENSSLDG00000007928	sbno1	95	84.116	ENSMOCG00000009390	Sbno1	99	84.116	Microtus_ochrogaster
ENSSLDG00000007928	sbno1	100	85.491	ENSMMOG00000008691	sbno1	99	86.060	Mola_mola
ENSSLDG00000007928	sbno1	99	75.281	ENSMODG00000012470	SBNO1	98	75.281	Monodelphis_domestica
ENSSLDG00000007928	sbno1	100	93.532	ENSMALG00000001056	sbno1	100	93.390	Monopterus_albus
ENSSLDG00000007928	sbno1	99	75.899	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.228	Mus_caroli
ENSSLDG00000007928	sbno1	99	76.251	ENSMUSG00000038095	Sbno1	94	91.228	Mus_musculus
ENSSLDG00000007928	sbno1	99	75.437	MGP_PahariEiJ_G0024329	Sbno1	95	91.228	Mus_pahari
ENSSLDG00000007928	sbno1	99	76.180	MGP_SPRETEiJ_G0028747	Sbno1	95	91.228	Mus_spretus
ENSSLDG00000007928	sbno1	99	75.823	ENSMPUG00000001658	SBNO1	99	75.683	Mustela_putorius_furo
ENSSLDG00000007928	sbno1	99	75.403	ENSMLUG00000017159	SBNO1	99	75.403	Myotis_lucifugus
ENSSLDG00000007928	sbno1	92	85.658	ENSNGAG00000012620	Sbno1	98	85.658	Nannospalax_galili
ENSSLDG00000007928	sbno1	100	88.327	ENSNBRG00000019189	sbno1	100	87.758	Neolamprologus_brichardi
ENSSLDG00000007928	sbno1	99	72.370	ENSNLEG00000001502	SBNO1	99	76.173	Nomascus_leucogenys
ENSSLDG00000007928	sbno1	62	73.585	ENSMEUG00000008768	-	93	76.101	Notamacropus_eugenii
ENSSLDG00000007928	sbno1	99	75.299	ENSOPRG00000011054	SBNO1	99	75.229	Ochotona_princeps
ENSSLDG00000007928	sbno1	95	84.991	ENSODEG00000009997	SBNO1	99	84.991	Octodon_degus
ENSSLDG00000007928	sbno1	100	92.761	ENSONIG00000015348	sbno1	100	92.477	Oreochromis_niloticus
ENSSLDG00000007928	sbno1	98	74.929	ENSOCUG00000002441	SBNO1	95	75.179	Oryctolagus_cuniculus
ENSSLDG00000007928	sbno1	100	90.284	ENSORLG00000001593	sbno1	100	90.213	Oryzias_latipes
ENSSLDG00000007928	sbno1	100	90.206	ENSORLG00020015216	sbno1	100	90.206	Oryzias_latipes_hni
ENSSLDG00000007928	sbno1	100	90.419	ENSORLG00015002726	sbno1	100	90.419	Oryzias_latipes_hsok
ENSSLDG00000007928	sbno1	99	90.385	ENSOMEG00000019313	sbno1	99	90.385	Oryzias_melastigma
ENSSLDG00000007928	sbno1	50	72.119	ENSOGAG00000010781	-	98	72.546	Otolemur_garnettii
ENSSLDG00000007928	sbno1	100	75.577	ENSOARG00000004404	SBNO1	99	75.577	Ovis_aries
ENSSLDG00000007928	sbno1	95	84.629	ENSPPAG00000024635	SBNO1	99	84.629	Pan_paniscus
ENSSLDG00000007928	sbno1	99	75.753	ENSPPRG00000022092	SBNO1	99	75.613	Panthera_pardus
ENSSLDG00000007928	sbno1	99	75.702	ENSPTIG00000017803	SBNO1	99	75.562	Panthera_tigris_altaica
ENSSLDG00000007928	sbno1	95	84.629	ENSPTRG00000005597	SBNO1	99	84.629	Pan_troglodytes
ENSSLDG00000007928	sbno1	95	84.477	ENSPANG00000011640	SBNO1	99	84.477	Papio_anubis
ENSSLDG00000007928	sbno1	100	81.144	ENSPKIG00000001441	sbno1	100	80.946	Paramormyrops_kingsleyae
ENSSLDG00000007928	sbno1	98	75.251	ENSPSIG00000009572	-	99	75.088	Pelodiscus_sinensis
ENSSLDG00000007928	sbno1	92	72.003	ENSPSIG00000009256	-	99	72.171	Pelodiscus_sinensis
ENSSLDG00000007928	sbno1	95	83.935	ENSPEMG00000016087	Sbno1	99	83.935	Peromyscus_maniculatus_bairdii
ENSSLDG00000007928	sbno1	99	75.158	ENSPCIG00000010985	SBNO1	99	75.439	Phascolarctos_cinereus
ENSSLDG00000007928	sbno1	100	92.111	ENSPFOG00000005069	sbno1	100	92.111	Poecilia_formosa
ENSSLDG00000007928	sbno1	100	92.253	ENSPLAG00000015015	sbno1	100	92.253	Poecilia_latipinna
ENSSLDG00000007928	sbno1	100	92.116	ENSPMEG00000021212	sbno1	100	92.116	Poecilia_mexicana
ENSSLDG00000007928	sbno1	100	91.477	ENSPREG00000017746	sbno1	100	91.477	Poecilia_reticulata
ENSSLDG00000007928	sbno1	99	75.298	ENSPPYG00000005084	SBNO1	99	75.509	Pongo_abelii
ENSSLDG00000007928	sbno1	88	68.800	ENSPCAG00000008634	SBNO1	88	68.449	Procavia_capensis
ENSSLDG00000007928	sbno1	95	84.882	ENSPCOG00000024277	SBNO1	99	84.882	Propithecus_coquereli
ENSSLDG00000007928	sbno1	87	84.493	ENSPVAG00000015304	SBNO1	87	84.493	Pteropus_vampyrus
ENSSLDG00000007928	sbno1	100	92.608	ENSPNYG00000004291	sbno1	100	91.969	Pundamilia_nyererei
ENSSLDG00000007928	sbno1	100	83.168	ENSPNAG00000015622	sbno1	100	82.956	Pygocentrus_nattereri
ENSSLDG00000007928	sbno1	95	84.116	ENSRNOG00000001064	Sbno1	99	84.268	Rattus_norvegicus
ENSSLDG00000007928	sbno1	95	84.477	ENSRROG00000034230	SBNO1	99	84.477	Rhinopithecus_roxellana
ENSSLDG00000007928	sbno1	97	73.038	ENSSBOG00000015422	SBNO1	99	72.965	Saimiri_boliviensis_boliviensis
ENSSLDG00000007928	sbno1	100	81.735	ENSSFOG00015019025	sbno1	100	82.440	Scleropages_formosus
ENSSLDG00000007928	sbno1	100	95.018	ENSSMAG00000013640	sbno1	100	95.018	Scophthalmus_maximus
ENSSLDG00000007928	sbno1	100	99.644	ENSSDUG00000023480	sbno1	100	99.644	Seriola_dumerili
ENSSLDG00000007928	sbno1	89	81.935	ENSSARG00000002594	SBNO1	89	82.097	Sorex_araneus
ENSSLDG00000007928	sbno1	98	75.556	ENSSPUG00000012640	SBNO1	99	75.460	Sphenodon_punctatus
ENSSLDG00000007928	sbno1	100	94.883	ENSSPAG00000016244	sbno1	100	94.883	Stegastes_partitus
ENSSLDG00000007928	sbno1	99	75.385	ENSSSCG00000009776	SBNO1	99	75.385	Sus_scrofa
ENSSLDG00000007928	sbno1	98	75.768	ENSTGUG00000005380	SBNO1	99	76.023	Taeniopygia_guttata
ENSSLDG00000007928	sbno1	99	88.636	ENSTRUG00000018490	sbno1	99	88.565	Takifugu_rubripes
ENSSLDG00000007928	sbno1	57	85.803	ENSTNIG00000013506	sbno1	99	86.090	Tetraodon_nigroviridis
ENSSLDG00000007928	sbno1	99	75.753	ENSUAMG00000019671	SBNO1	99	75.613	Ursus_americanus
ENSSLDG00000007928	sbno1	99	75.753	ENSUMAG00000004002	SBNO1	99	75.613	Ursus_maritimus
ENSSLDG00000007928	sbno1	92	78.730	ENSVPAG00000007024	SBNO1	90	78.730	Vicugna_pacos
ENSSLDG00000007928	sbno1	99	75.753	ENSVVUG00000027807	SBNO1	99	75.613	Vulpes_vulpes
ENSSLDG00000007928	sbno1	99	73.315	ENSXETG00000031930	SBNO1	99	72.874	Xenopus_tropicalis
ENSSLDG00000007928	sbno1	88	90.024	ENSXCOG00000011607	sbno1	99	87.705	Xiphophorus_couchianus
ENSSLDG00000007928	sbno1	100	91.690	ENSXMAG00000002140	sbno1	100	91.761	Xiphophorus_maculatus