EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000007979 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 18401 bases
Position: chrPEQF01099586.1:6526133-6544533
Accession: 111648152
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000009985	RRM_1	PF00076.22	1.6e-16	1	2
ENSSLDP00000009985	RRM_1	PF00076.22	1.6e-16	2	2
ENSSLDP00000010011	RRM_1	PF00076.22	1.6e-16	1	2
ENSSLDP00000010011	RRM_1	PF00076.22	1.6e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000010348	-	1695	XM_023397938	ENSSLDP00000009985	513 (aa)	XP_023253706	UPI000C6F61BC
ENSSLDT00000010374	-	1697	XM_023397935	ENSSLDP00000010011	513 (aa)	XP_023253703	UPI000C6F61BC

Gene Model

Click here to download ENSSLDG00000007979's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000007979's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000007979	rnpc3	96	54.980	ENSG00000185946	RNPC3	96	56.391	Homo_sapiens
ENSSLDG00000007979	rnpc3	100	85.770	ENSAPOG00000017371	rnpc3	100	85.770	Acanthochromis_polyacanthus
ENSSLDG00000007979	rnpc3	96	55.070	ENSAMEG00000001694	RNPC3	94	55.070	Ailuropoda_melanoleuca
ENSSLDG00000007979	rnpc3	99	79.804	ENSACIG00000021043	rnpc3	99	79.804	Amphilophus_citrinellus
ENSSLDG00000007979	rnpc3	100	86.745	ENSAOCG00000014052	rnpc3	98	86.745	Amphiprion_ocellaris
ENSSLDG00000007979	rnpc3	100	86.550	ENSAPEG00000008739	rnpc3	98	86.550	Amphiprion_percula
ENSSLDG00000007979	rnpc3	100	85.078	ENSATEG00000021263	rnpc3	100	85.078	Anabas_testudineus
ENSSLDG00000007979	rnpc3	89	55.748	ENSAPLG00000015605	RNPC3	99	54.230	Anas_platyrhynchos
ENSSLDG00000007979	rnpc3	96	55.466	ENSACAG00000002029	RNPC3	96	53.770	Anolis_carolinensis
ENSSLDG00000007979	rnpc3	96	54.851	ENSANAG00000019950	RNPC3	95	54.851	Aotus_nancymaae
ENSSLDG00000007979	rnpc3	99	83.922	ENSACLG00000014702	rnpc3	99	83.922	Astatotilapia_calliptera
ENSSLDG00000007979	rnpc3	99	67.054	ENSAMXG00000033372	rnpc3	99	66.860	Astyanax_mexicanus
ENSSLDG00000007979	rnpc3	96	55.000	ENSBTAG00000019091	RNPC3	95	55.090	Bos_taurus
ENSSLDG00000007979	rnpc3	96	54.691	ENSCJAG00000035686	RNPC3	94	54.691	Callithrix_jacchus
ENSSLDG00000007979	rnpc3	96	55.289	ENSCAFG00000019972	RNPC3	94	55.289	Canis_familiaris
ENSSLDG00000007979	rnpc3	96	54.980	ENSCAFG00020011300	RNPC3	94	54.980	Canis_lupus_dingo
ENSSLDG00000007979	rnpc3	96	55.378	ENSCHIG00000020361	RNPC3	95	54.890	Capra_hircus
ENSSLDG00000007979	rnpc3	96	54.600	ENSTSYG00000030256	RNPC3	95	54.600	Carlito_syrichta
ENSSLDG00000007979	rnpc3	86	45.982	ENSCAPG00000013600	RNPC3	97	46.380	Cavia_aperea
ENSSLDG00000007979	rnpc3	96	54.582	ENSCPOG00000031638	RNPC3	95	54.582	Cavia_porcellus
ENSSLDG00000007979	rnpc3	96	54.871	ENSCCAG00000024301	RNPC3	95	54.871	Cebus_capucinus
ENSSLDG00000007979	rnpc3	96	54.871	ENSCATG00000002086	RNPC3	94	54.871	Cercocebus_atys
ENSSLDG00000007979	rnpc3	96	42.000	ENSCATG00000035930	-	52	48.606	Cercocebus_atys
ENSSLDG00000007979	rnpc3	96	52.519	ENSCLAG00000005169	RNPC3	95	53.984	Chinchilla_lanigera
ENSSLDG00000007979	rnpc3	96	55.030	ENSCSAG00000001519	RNPC3	94	55.030	Chlorocebus_sabaeus
ENSSLDG00000007979	rnpc3	97	56.746	ENSCPBG00000028311	RNPC3	95	56.349	Chrysemys_picta_bellii
ENSSLDG00000007979	rnpc3	95	35.246	ENSCSAVG00000002800	-	76	53.077	Ciona_savignyi
ENSSLDG00000007979	rnpc3	96	54.871	ENSCANG00000031444	RNPC3	94	54.871	Colobus_angolensis_palliatus
ENSSLDG00000007979	rnpc3	96	54.509	ENSCGRG00001019276	Rnpc3	95	54.509	Cricetulus_griseus_chok1gshd
ENSSLDG00000007979	rnpc3	89	52.711	ENSCGRG00000000053	Rnpc3	99	52.711	Cricetulus_griseus_crigri
ENSSLDG00000007979	rnpc3	99	78.516	ENSCSEG00000013475	rnpc3	99	78.516	Cynoglossus_semilaevis
ENSSLDG00000007979	rnpc3	100	80.350	ENSCVAG00000002645	rnpc3	100	80.350	Cyprinodon_variegatus
ENSSLDG00000007979	rnpc3	99	66.536	ENSDARG00000011247	rnpc3	99	65.558	Danio_rerio
ENSSLDG00000007979	rnpc3	96	54.491	ENSDNOG00000047498	-	95	54.491	Dasypus_novemcinctus
ENSSLDG00000007979	rnpc3	96	54.092	ENSDNOG00000044555	-	95	54.092	Dasypus_novemcinctus
ENSSLDG00000007979	rnpc3	96	54.600	ENSDORG00000027343	Rnpc3	95	54.600	Dipodomys_ordii
ENSSLDG00000007979	rnpc3	99	50.380	ENSEBUG00000002068	rnpc3	99	50.286	Eptatretus_burgeri
ENSSLDG00000007979	rnpc3	96	55.489	ENSEASG00005015957	RNPC3	94	55.489	Equus_asinus_asinus
ENSSLDG00000007979	rnpc3	96	55.489	ENSECAG00000021148	RNPC3	94	55.489	Equus_caballus
ENSSLDG00000007979	rnpc3	99	70.058	ENSELUG00000002264	rnpc3	99	69.349	Esox_lucius
ENSSLDG00000007979	rnpc3	96	54.709	ENSFCAG00000024312	RNPC3	94	54.709	Felis_catus
ENSSLDG00000007979	rnpc3	89	56.156	ENSFALG00000002580	RNPC3	99	55.292	Ficedula_albicollis
ENSSLDG00000007979	rnpc3	96	54.921	ENSFDAG00000019948	RNPC3	95	54.762	Fukomys_damarensis
ENSSLDG00000007979	rnpc3	100	73.684	ENSFHEG00000020647	rnpc3	100	73.489	Fundulus_heteroclitus
ENSSLDG00000007979	rnpc3	100	69.246	ENSGMOG00000019213	rnpc3	99	69.186	Gadus_morhua
ENSSLDG00000007979	rnpc3	96	56.886	ENSGALG00000005162	RNPC3	88	56.487	Gallus_gallus
ENSSLDG00000007979	rnpc3	100	77.583	ENSGAFG00000017236	rnpc3	100	77.583	Gambusia_affinis
ENSSLDG00000007979	rnpc3	100	81.044	ENSGACG00000002048	rnpc3	99	81.853	Gasterosteus_aculeatus
ENSSLDG00000007979	rnpc3	97	57.396	ENSGAGG00000008438	RNPC3	94	56.805	Gopherus_agassizii
ENSSLDG00000007979	rnpc3	97	48.303	ENSGGOG00000026201	-	95	48.104	Gorilla_gorilla
ENSSLDG00000007979	rnpc3	82	85.417	ENSHBUG00000015966	rnpc3	85	85.417	Haplochromis_burtoni
ENSSLDG00000007979	rnpc3	96	54.348	ENSHGLG00000001708	RNPC3	95	54.167	Heterocephalus_glaber_female
ENSSLDG00000007979	rnpc3	96	54.348	ENSHGLG00100003005	RNPC3	95	54.167	Heterocephalus_glaber_male
ENSSLDG00000007979	rnpc3	99	74.609	ENSHCOG00000017135	rnpc3	100	74.609	Hippocampus_comes
ENSSLDG00000007979	rnpc3	99	65.692	ENSIPUG00000002916	rnpc3	99	65.692	Ictalurus_punctatus
ENSSLDG00000007979	rnpc3	96	53.892	ENSSTOG00000025020	RNPC3	95	53.892	Ictidomys_tridecemlineatus
ENSSLDG00000007979	rnpc3	96	54.491	ENSJJAG00000010203	Rnpc3	95	54.491	Jaculus_jaculus
ENSSLDG00000007979	rnpc3	99	79.216	ENSKMAG00000017358	rnpc3	99	78.824	Kryptolebias_marmoratus
ENSSLDG00000007979	rnpc3	100	81.907	ENSLBEG00000024901	rnpc3	98	81.907	Labrus_bergylta
ENSSLDG00000007979	rnpc3	99	58.560	ENSLACG00000005720	RNPC3	92	56.809	Latimeria_chalumnae
ENSSLDG00000007979	rnpc3	99	63.689	ENSLOCG00000007986	rnpc3	99	61.359	Lepisosteus_oculatus
ENSSLDG00000007979	rnpc3	96	55.200	ENSLAFG00000032342	RNPC3	95	55.200	Loxodonta_africana
ENSSLDG00000007979	rnpc3	96	54.871	ENSMFAG00000002004	RNPC3	94	54.871	Macaca_fascicularis
ENSSLDG00000007979	rnpc3	96	41.082	ENSMFAG00000002917	-	94	40.964	Macaca_fascicularis
ENSSLDG00000007979	rnpc3	96	54.672	ENSMMUG00000018039	RNPC3	94	54.672	Macaca_mulatta
ENSSLDG00000007979	rnpc3	79	50.450	ENSMMUG00000002098	-	85	50.450	Macaca_mulatta
ENSSLDG00000007979	rnpc3	96	39.919	ENSMNEG00000029209	-	94	40.040	Macaca_nemestrina
ENSSLDG00000007979	rnpc3	96	51.491	ENSMNEG00000033950	RNPC3	94	51.491	Macaca_nemestrina
ENSSLDG00000007979	rnpc3	96	54.871	ENSMLEG00000033628	RNPC3	94	54.871	Mandrillus_leucophaeus
ENSSLDG00000007979	rnpc3	96	41.767	ENSMLEG00000034644	-	95	41.454	Mandrillus_leucophaeus
ENSSLDG00000007979	rnpc3	100	76.023	ENSMAMG00000007496	rnpc3	100	76.023	Mastacembelus_armatus
ENSSLDG00000007979	rnpc3	99	83.463	ENSMZEG00005020233	rnpc3	99	83.463	Maylandia_zebra
ENSSLDG00000007979	rnpc3	89	56.410	ENSMGAG00000006381	RNPC3	99	55.579	Meleagris_gallopavo
ENSSLDG00000007979	rnpc3	96	54.839	ENSMAUG00000001358	Rnpc3	95	54.839	Mesocricetus_auratus
ENSSLDG00000007979	rnpc3	96	55.446	ENSMICG00000029591	RNPC3	95	55.446	Microcebus_murinus
ENSSLDG00000007979	rnpc3	96	54.400	ENSMOCG00000013423	Rnpc3	94	54.400	Microtus_ochrogaster
ENSSLDG00000007979	rnpc3	100	75.486	ENSMMOG00000005309	rnpc3	100	77.043	Mola_mola
ENSSLDG00000007979	rnpc3	97	54.871	ENSMODG00000002946	RNPC3	95	54.871	Monodelphis_domestica
ENSSLDG00000007979	rnpc3	99	80.626	ENSMALG00000015471	rnpc3	100	80.626	Monopterus_albus
ENSSLDG00000007979	rnpc3	96	54.509	MGP_CAROLIEiJ_G0025555	Rnpc3	96	54.509	Mus_caroli
ENSSLDG00000007979	rnpc3	96	54.527	ENSMUSG00000027981	Rnpc3	99	53.079	Mus_musculus
ENSSLDG00000007979	rnpc3	96	54.125	MGP_PahariEiJ_G0027001	Rnpc3	96	54.125	Mus_pahari
ENSSLDG00000007979	rnpc3	96	51.072	MGP_SPRETEiJ_G0026505	Rnpc3	96	54.326	Mus_spretus
ENSSLDG00000007979	rnpc3	96	55.489	ENSMPUG00000007349	RNPC3	94	55.489	Mustela_putorius_furo
ENSSLDG00000007979	rnpc3	96	55.179	ENSMLUG00000028743	RNPC3	94	55.110	Myotis_lucifugus
ENSSLDG00000007979	rnpc3	96	54.491	ENSNGAG00000010939	Rnpc3	95	54.491	Nannospalax_galili
ENSSLDG00000007979	rnpc3	99	84.314	ENSNBRG00000012196	rnpc3	96	84.314	Neolamprologus_brichardi
ENSSLDG00000007979	rnpc3	96	54.960	ENSNLEG00000012013	RNPC3	95	54.960	Nomascus_leucogenys
ENSSLDG00000007979	rnpc3	96	54.781	ENSODEG00000007612	RNPC3	95	54.781	Octodon_degus
ENSSLDG00000007979	rnpc3	99	84.706	ENSONIG00000004770	rnpc3	100	84.306	Oreochromis_niloticus
ENSSLDG00000007979	rnpc3	92	56.237	ENSOANG00000008220	RNPC3	99	55.882	Ornithorhynchus_anatinus
ENSSLDG00000007979	rnpc3	96	54.941	ENSOCUG00000004016	RNPC3	95	54.691	Oryctolagus_cuniculus
ENSSLDG00000007979	rnpc3	100	76.413	ENSORLG00000005694	rnpc3	100	76.413	Oryzias_latipes
ENSSLDG00000007979	rnpc3	100	77.778	ENSORLG00020005513	rnpc3	100	77.778	Oryzias_latipes_hni
ENSSLDG00000007979	rnpc3	100	76.998	ENSORLG00015002179	rnpc3	100	76.998	Oryzias_latipes_hsok
ENSSLDG00000007979	rnpc3	100	76.998	ENSOMEG00000017737	rnpc3	100	77.193	Oryzias_melastigma
ENSSLDG00000007979	rnpc3	96	55.865	ENSOGAG00000026182	RNPC3	95	55.865	Otolemur_garnettii
ENSSLDG00000007979	rnpc3	96	55.378	ENSOARG00000018719	RNPC3	95	54.890	Ovis_aries
ENSSLDG00000007979	rnpc3	96	54.762	ENSPPAG00000037459	RNPC3	95	54.762	Pan_paniscus
ENSSLDG00000007979	rnpc3	97	49.206	ENSPPAG00000030278	-	97	49.405	Pan_paniscus
ENSSLDG00000007979	rnpc3	96	55.000	ENSPPRG00000020246	RNPC3	94	55.000	Panthera_pardus
ENSSLDG00000007979	rnpc3	96	55.000	ENSPTIG00000009887	RNPC3	96	55.000	Panthera_tigris_altaica
ENSSLDG00000007979	rnpc3	96	54.672	ENSPTRG00000033902	RNPC3	95	54.672	Pan_troglodytes
ENSSLDG00000007979	rnpc3	97	48.703	ENSPTRG00000044227	-	97	48.703	Pan_troglodytes
ENSSLDG00000007979	rnpc3	96	44.444	ENSPANG00000029957	-	96	38.432	Papio_anubis
ENSSLDG00000007979	rnpc3	96	54.980	ENSPANG00000012137	RNPC3	94	54.980	Papio_anubis
ENSSLDG00000007979	rnpc3	99	66.342	ENSPKIG00000008828	rnpc3	99	64.202	Paramormyrops_kingsleyae
ENSSLDG00000007979	rnpc3	65	53.846	ENSPSIG00000007396	RNPC3	99	54.142	Pelodiscus_sinensis
ENSSLDG00000007979	rnpc3	99	65.497	ENSPMGG00000011742	rnpc3	100	65.497	Periophthalmus_magnuspinnatus
ENSSLDG00000007979	rnpc3	92	52.092	ENSPEMG00000020112	Rnpc3	99	53.348	Peromyscus_maniculatus_bairdii
ENSSLDG00000007979	rnpc3	95	41.948	ENSPMAG00000003778	rnpc3	50	48.175	Petromyzon_marinus
ENSSLDG00000007979	rnpc3	97	55.070	ENSPCIG00000004415	-	95	55.070	Phascolarctos_cinereus
ENSSLDG00000007979	rnpc3	99	78.431	ENSPFOG00000009895	rnpc3	99	78.431	Poecilia_formosa
ENSSLDG00000007979	rnpc3	99	78.824	ENSPLAG00000012023	rnpc3	99	78.824	Poecilia_latipinna
ENSSLDG00000007979	rnpc3	99	78.865	ENSPMEG00000003663	rnpc3	99	78.627	Poecilia_mexicana
ENSSLDG00000007979	rnpc3	100	77.388	ENSPREG00000010206	rnpc3	100	77.388	Poecilia_reticulata
ENSSLDG00000007979	rnpc3	81	50.948	ENSPPYG00000001102	RNPC3	93	51.185	Pongo_abelii
ENSSLDG00000007979	rnpc3	99	83.922	ENSPNYG00000020603	rnpc3	99	83.922	Pundamilia_nyererei
ENSSLDG00000007979	rnpc3	99	57.824	ENSPNAG00000000524	rnpc3	92	57.824	Pygocentrus_nattereri
ENSSLDG00000007979	rnpc3	96	54.309	ENSRNOG00000017310	Rnpc3	95	54.309	Rattus_norvegicus
ENSSLDG00000007979	rnpc3	96	51.984	ENSRBIG00000043897	RNPC3	94	52.183	Rhinopithecus_bieti
ENSSLDG00000007979	rnpc3	96	54.871	ENSRROG00000032334	RNPC3	94	54.871	Rhinopithecus_roxellana
ENSSLDG00000007979	rnpc3	96	55.179	ENSSBOG00000024473	RNPC3	95	55.179	Saimiri_boliviensis_boliviensis
ENSSLDG00000007979	rnpc3	97	55.534	ENSSHAG00000011859	RNPC3	95	55.534	Sarcophilus_harrisii
ENSSLDG00000007979	rnpc3	99	68.340	ENSSFOG00015013055	rnpc3	99	70.000	Scleropages_formosus
ENSSLDG00000007979	rnpc3	100	87.961	ENSSMAG00000020346	rnpc3	100	87.961	Scophthalmus_maximus
ENSSLDG00000007979	rnpc3	100	99.220	ENSSDUG00000006600	rnpc3	100	99.220	Seriola_dumerili
ENSSLDG00000007979	rnpc3	97	51.205	ENSSPUG00000003872	-	92	51.004	Sphenodon_punctatus
ENSSLDG00000007979	rnpc3	95	56.998	ENSSPUG00000008539	-	92	56.795	Sphenodon_punctatus
ENSSLDG00000007979	rnpc3	100	83.236	ENSSPAG00000005633	rnpc3	100	83.041	Stegastes_partitus
ENSSLDG00000007979	rnpc3	96	53.891	ENSSSCG00000037254	RNPC3	95	54.600	Sus_scrofa
ENSSLDG00000007979	rnpc3	89	56.710	ENSTGUG00000004795	-	99	54.113	Taeniopygia_guttata
ENSSLDG00000007979	rnpc3	99	77.432	ENSTNIG00000018963	rnpc3	100	77.432	Tetraodon_nigroviridis
ENSSLDG00000007979	rnpc3	96	55.179	ENSUMAG00000007775	RNPC3	96	55.179	Ursus_maritimus
ENSSLDG00000007979	rnpc3	96	54.980	ENSVVUG00000000331	RNPC3	94	54.980	Vulpes_vulpes
ENSSLDG00000007979	rnpc3	96	44.794	ENSXETG00000025027	rnpc3	96	44.314	Xenopus_tropicalis
ENSSLDG00000007979	rnpc3	54	79.273	ENSXCOG00000005013	rnpc3	100	76.628	Xiphophorus_couchianus
ENSSLDG00000007979	rnpc3	100	78.363	ENSXMAG00000006495	rnpc3	100	78.363	Xiphophorus_maculatus