EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSLDG00000008469 (Gene tree)
Gene ID
-
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Seriola_lalandi_dorsalis
Status
putative
Strand
Plus strand
Length
9741 bases
Position
chrPEQF01099379.1:7886933-7896673
Accession
111672593
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSLDP00000010673CPSF73-100_CPF11718.83.7e-5211
ENSSLDP00000010713CPSF73-100_CPF11718.86.4e-3911
ENSSLDP00000010713Beta-CaspPF10996.88.1e-3411
ENSSLDP00000010673Beta-CaspPF10996.89.4e-3411
ENSSLDP00000010713Lactamase_BPF00753.272.5e-1811
ENSSLDP00000010673Lactamase_BPF00753.272.8e-1811
ENSSLDP00000010713RMMBLPF07521.121.6e-2111
ENSSLDP00000010673RMMBLPF07521.121.8e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSLDT00000011065-2705XM_023430044ENSSLDP00000010673704 (aa)XP_023285812UPI000C6F8A75
ENSSLDT00000011105-1941-ENSSLDP00000010713646 (aa)--
Gene Model
Click here to download ENSSLDG00000008469's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000008469's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSLDG00000008469cpsf37537.475ENSSLDG00000017198ints118237.475
ENSSLDG00000008469cpsf39789.030ENSSLDG00000005234CPSF310088.261
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSLDG00000008469cpsf39190.847ENSG00000119203CPSF310098.529Homo_sapiens
ENSSLDG00000008469cpsf37996.063ENSAPOG00000012241CPSF39196.063Acanthochromis_polyacanthus
ENSSLDG00000008469cpsf39795.773ENSAPOG00000022087cpsf310095.773Acanthochromis_polyacanthus
ENSSLDG00000008469cpsf39685.903ENSAMEG00000008493CPSF39985.903Ailuropoda_melanoleuca
ENSSLDG00000008469cpsf38890.415ENSACIG00000009846cpsf310083.988Amphilophus_citrinellus
ENSSLDG00000008469cpsf38886.645ENSACIG00000023663CPSF39986.645Amphilophus_citrinellus
ENSSLDG00000008469cpsf39788.522ENSAOCG00000010077CPSF310088.406Amphiprion_ocellaris
ENSSLDG00000008469cpsf39796.019ENSAOCG00000022056cpsf310096.019Amphiprion_ocellaris
ENSSLDG00000008469cpsf39795.335ENSAPEG00000019526cpsf310095.335Amphiprion_percula
ENSSLDG00000008469cpsf39788.522ENSAPEG00000021167CPSF310088.406Amphiprion_percula
ENSSLDG00000008469cpsf39784.738ENSATEG00000014525CPSF39984.738Anabas_testudineus
ENSSLDG00000008469cpsf39795.468ENSATEG00000003959cpsf39995.468Anabas_testudineus
ENSSLDG00000008469cpsf39090.674ENSAPLG00000006941CPSF39885.672Anas_platyrhynchos
ENSSLDG00000008469cpsf38489.852ENSACAG00000001759CPSF39983.281Anolis_carolinensis
ENSSLDG00000008469cpsf39680.617ENSANAG00000031254CPSF39981.231Aotus_nancymaae
ENSSLDG00000008469cpsf38886.963ENSACLG00000018846CPSF39986.963Astatotilapia_calliptera
ENSSLDG00000008469cpsf39494.411ENSACLG00000014484cpsf39994.411Astatotilapia_calliptera
ENSSLDG00000008469cpsf39393.167ENSAMXG00000004786cpsf39987.936Astyanax_mexicanus
ENSSLDG00000008469cpsf39685.903ENSBTAG00000019735CPSF39985.903Bos_taurus
ENSSLDG00000008469cpsf39159.567WBGene00013460cpsf-38957.571Caenorhabditis_elegans
ENSSLDG00000008469cpsf39190.847ENSCJAG00000006276CPSF39985.463Callithrix_jacchus
ENSSLDG00000008469cpsf39685.903ENSCAFG00000003375CPSF39585.903Canis_familiaris
ENSSLDG00000008469cpsf39190.847ENSCAFG00020026799CPSF39987.864Canis_lupus_dingo
ENSSLDG00000008469cpsf39685.903ENSCHIG00000013973CPSF39985.903Capra_hircus
ENSSLDG00000008469cpsf39190.847ENSTSYG00000002967CPSF39985.609Carlito_syrichta
ENSSLDG00000008469cpsf39487.789ENSCAPG00000013851CPSF39986.316Cavia_aperea
ENSSLDG00000008469cpsf39687.781ENSCPOG00000011299CPSF39986.197Cavia_porcellus
ENSSLDG00000008469cpsf39190.847ENSCCAG00000036730CPSF39985.586Cebus_capucinus
ENSSLDG00000008469cpsf39090.690ENSCATG00000014770CPSF39990.690Cercocebus_atys
ENSSLDG00000008469cpsf39686.197ENSCLAG00000002727CPSF39986.197Chinchilla_lanigera
ENSSLDG00000008469cpsf39677.680ENSCSAG00000007125CPSF39977.680Chlorocebus_sabaeus
ENSSLDG00000008469cpsf383100.000ENSCHOG00000000180CPSF38561.444Choloepus_hoffmanni
ENSSLDG00000008469cpsf39390.134ENSCPBG00000014074CPSF39985.631Chrysemys_picta_bellii
ENSSLDG00000008469cpsf39667.595ENSCING00000007214-9767.595Ciona_intestinalis
ENSSLDG00000008469cpsf39676.093ENSCANG00000034435CPSF39976.093Colobus_angolensis_palliatus
ENSSLDG00000008469cpsf39190.508ENSCGRG00001013134Cpsf39985.463Cricetulus_griseus_chok1gshd
ENSSLDG00000008469cpsf39190.508ENSCGRG00000018319Cpsf39985.463Cricetulus_griseus_crigri
ENSSLDG00000008469cpsf39687.898ENSCSEG00000002021CPSF39986.977Cynoglossus_semilaevis
ENSSLDG00000008469cpsf39987.403ENSCVAG00000015067CPSF39988.081Cyprinodon_variegatus
ENSSLDG00000008469cpsf39987.558ENSDARG00000027649cpsf310086.957Danio_rerio
ENSSLDG00000008469cpsf39684.897ENSDNOG00000008940CPSF39584.897Dasypus_novemcinctus
ENSSLDG00000008469cpsf39191.017ENSDORG00000014263Cpsf39986.615Dipodomys_ordii
ENSSLDG00000008469cpsf39768.621FBgn0261065Cpsf739966.960Drosophila_melanogaster
ENSSLDG00000008469cpsf39177.458ENSETEG00000003893CPSF39974.308Echinops_telfairi
ENSSLDG00000008469cpsf39383.946ENSEBUG00000009018cpsf39974.859Eptatretus_burgeri
ENSSLDG00000008469cpsf39685.903ENSEASG00005003970CPSF39985.903Equus_asinus_asinus
ENSSLDG00000008469cpsf39685.903ENSECAG00000019911CPSF39690.847Equus_caballus
ENSSLDG00000008469cpsf39671.512ENSEEUG00000015422CPSF39971.512Erinaceus_europaeus
ENSSLDG00000008469cpsf39989.302ENSELUG00000013775cpsf39990.566Esox_lucius
ENSSLDG00000008469cpsf39685.903ENSFCAG00000007852CPSF39985.903Felis_catus
ENSSLDG00000008469cpsf38690.794ENSFALG00000006572CPSF310085.162Ficedula_albicollis
ENSSLDG00000008469cpsf39785.029ENSFDAG00000006317CPSF39985.029Fukomys_damarensis
ENSSLDG00000008469cpsf35768.049ENSFHEG00000012186CPSF310068.049Fundulus_heteroclitus
ENSSLDG00000008469cpsf39791.837ENSFHEG00000014774cpsf310091.837Fundulus_heteroclitus
ENSSLDG00000008469cpsf39394.833ENSGMOG00000003157cpsf310090.421Gadus_morhua
ENSSLDG00000008469cpsf39687.081ENSGALG00000016424CPSF39985.631Gallus_gallus
ENSSLDG00000008469cpsf39789.348ENSGAFG00000008016CPSF310088.696Gambusia_affinis
ENSSLDG00000008469cpsf38889.920ENSGAFG00000019449cpsf310083.528Gambusia_affinis
ENSSLDG00000008469cpsf36681.064ENSGAGG00000025583CPSF39381.064Gopherus_agassizii
ENSSLDG00000008469cpsf39683.477ENSGGOG00000001757CPSF39196.360Gorilla_gorilla
ENSSLDG00000008469cpsf35780.988ENSHBUG00000014332CPSF310080.988Haplochromis_burtoni
ENSSLDG00000008469cpsf39794.315ENSHBUG00000001188cpsf310094.315Haplochromis_burtoni
ENSSLDG00000008469cpsf39785.277ENSHGLG00000000666CPSF39985.277Heterocephalus_glaber_female
ENSSLDG00000008469cpsf39785.277ENSHGLG00100007765CPSF39985.277Heterocephalus_glaber_male
ENSSLDG00000008469cpsf39791.667ENSHCOG00000007251cpsf39991.667Hippocampus_comes
ENSSLDG00000008469cpsf39491.118ENSHCOG00000015957CPSF39986.888Hippocampus_comes
ENSSLDG00000008469cpsf39690.000ENSIPUG00000023488cpsf39988.372Ictalurus_punctatus
ENSSLDG00000008469cpsf39190.847ENSSTOG00000004476CPSF39985.609Ictidomys_tridecemlineatus
ENSSLDG00000008469cpsf39190.339ENSJJAG00000023415Cpsf39985.066Jaculus_jaculus
ENSSLDG00000008469cpsf39787.791ENSKMAG00000007317CPSF39987.791Kryptolebias_marmoratus
ENSSLDG00000008469cpsf39792.420ENSKMAG00000002806cpsf310092.420Kryptolebias_marmoratus
ENSSLDG00000008469cpsf39986.637ENSLBEG00000020569cpsf39786.637Labrus_bergylta
ENSSLDG00000008469cpsf35389.333ENSLBEG00000015018-9989.333Labrus_bergylta
ENSSLDG00000008469cpsf39392.333ENSLBEG00000013492CPSF39988.889Labrus_bergylta
ENSSLDG00000008469cpsf39384.783ENSLACG00000008308CPSF39979.855Latimeria_chalumnae
ENSSLDG00000008469cpsf39490.984ENSLOCG00000016823cpsf310087.590Lepisosteus_oculatus
ENSSLDG00000008469cpsf39189.608ENSLAFG00000009467CPSF39984.661Loxodonta_africana
ENSSLDG00000008469cpsf39190.847ENSMFAG00000001339CPSF39593.568Macaca_fascicularis
ENSSLDG00000008469cpsf39190.847ENSMMUG00000018038CPSF39293.568Macaca_mulatta
ENSSLDG00000008469cpsf38896.032ENSMNEG00000039447CPSF39996.032Macaca_nemestrina
ENSSLDG00000008469cpsf39190.847ENSMLEG00000026825CPSF39396.154Mandrillus_leucophaeus
ENSSLDG00000008469cpsf38886.032ENSMAMG00000008835CPSF39979.855Mastacembelus_armatus
ENSSLDG00000008469cpsf39794.898ENSMAMG00000003076cpsf310094.898Mastacembelus_armatus
ENSSLDG00000008469cpsf39987.422ENSMZEG00005006258CPSF310088.551Maylandia_zebra
ENSSLDG00000008469cpsf39794.315ENSMZEG00005014358cpsf310094.315Maylandia_zebra
ENSSLDG00000008469cpsf39485.907ENSMGAG00000013995CPSF310085.907Meleagris_gallopavo
ENSSLDG00000008469cpsf35275.936ENSMAUG00000000166Cpsf39975.936Mesocricetus_auratus
ENSSLDG00000008469cpsf39680.966ENSMICG00000002363CPSF39980.966Microcebus_murinus
ENSSLDG00000008469cpsf39685.494ENSMOCG00000020067Cpsf39985.494Microtus_ochrogaster
ENSSLDG00000008469cpsf37870.238ENSMMOG00000011923CPSF38477.143Mola_mola
ENSSLDG00000008469cpsf39385.276ENSMMOG00000018212CPSF39985.276Mola_mola
ENSSLDG00000008469cpsf39190.508ENSMODG00000014703CPSF39984.157Monodelphis_domestica
ENSSLDG00000008469cpsf38984.252ENSMALG00000011474CPSF39984.252Monopterus_albus
ENSSLDG00000008469cpsf39795.190ENSMALG00000016416cpsf310095.190Monopterus_albus
ENSSLDG00000008469cpsf39190.847MGP_CAROLIEiJ_G0017640Cpsf39985.756Mus_caroli
ENSSLDG00000008469cpsf39190.847ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSSLDG00000008469cpsf39190.678MGP_PahariEiJ_G0029397Cpsf39985.609Mus_pahari
ENSSLDG00000008469cpsf39190.847MGP_SPRETEiJ_G0018481Cpsf39985.756Mus_spretus
ENSSLDG00000008469cpsf39190.847ENSMPUG00000013213CPSF39985.777Mustela_putorius_furo
ENSSLDG00000008469cpsf39190.525ENSMLUG00000010636CPSF39985.337Myotis_lucifugus
ENSSLDG00000008469cpsf39685.463ENSNGAG00000019836Cpsf39985.463Nannospalax_galili
ENSSLDG00000008469cpsf39793.732ENSNBRG00000004770cpsf310093.732Neolamprologus_brichardi
ENSSLDG00000008469cpsf38886.963ENSNBRG00000010525CPSF39986.963Neolamprologus_brichardi
ENSSLDG00000008469cpsf39190.847ENSNLEG00000013359CPSF39196.360Nomascus_leucogenys
ENSSLDG00000008469cpsf39654.919ENSMEUG00000013117-9955.066Notamacropus_eugenii
ENSSLDG00000008469cpsf39677.647ENSOPRG00000008902CPSF39977.647Ochotona_princeps
ENSSLDG00000008469cpsf39191.695ENSODEG00000003129CPSF39986.637Octodon_degus
ENSSLDG00000008469cpsf39794.315ENSONIG00000018812cpsf310094.315Oreochromis_niloticus
ENSSLDG00000008469cpsf37983.452ENSOANG00000008577CPSF39983.452Ornithorhynchus_anatinus
ENSSLDG00000008469cpsf39685.903ENSOCUG00000003728CPSF39985.903Oryctolagus_cuniculus
ENSSLDG00000008469cpsf39791.254ENSORLG00000018854cpsf310091.254Oryzias_latipes
ENSSLDG00000008469cpsf39791.108ENSORLG00020013331cpsf310091.108Oryzias_latipes_hni
ENSSLDG00000008469cpsf39791.254ENSORLG00015011017cpsf310091.254Oryzias_latipes_hsok
ENSSLDG00000008469cpsf39791.837ENSOMEG00000010647cpsf39691.837Oryzias_melastigma
ENSSLDG00000008469cpsf39675.918ENSOGAG00000001680CPSF39975.918Otolemur_garnettii
ENSSLDG00000008469cpsf39685.903ENSOARG00000015073CPSF39985.903Ovis_aries
ENSSLDG00000008469cpsf39190.847ENSPPAG00000042457CPSF39196.360Pan_paniscus
ENSSLDG00000008469cpsf39190.847ENSPPRG00000016790CPSF39985.756Panthera_pardus
ENSSLDG00000008469cpsf39191.312ENSPTIG00000003920CPSF39986.136Panthera_tigris_altaica
ENSSLDG00000008469cpsf39190.847ENSPTRG00000011638CPSF39196.360Pan_troglodytes
ENSSLDG00000008469cpsf39190.847ENSPANG00000016798CPSF39593.568Papio_anubis
ENSSLDG00000008469cpsf39789.507ENSPKIG00000023646cpsf310088.696Paramormyrops_kingsleyae
ENSSLDG00000008469cpsf39189.813ENSPSIG00000016144CPSF39984.751Pelodiscus_sinensis
ENSSLDG00000008469cpsf35779.506ENSPMGG00000015311CPSF310079.506Periophthalmus_magnuspinnatus
ENSSLDG00000008469cpsf39491.449ENSPMGG00000006141-10084.385Periophthalmus_magnuspinnatus
ENSSLDG00000008469cpsf39190.678ENSPEMG00000017668Cpsf39985.609Peromyscus_maniculatus_bairdii
ENSSLDG00000008469cpsf38488.214ENSPMAG00000004841cpsf39988.214Petromyzon_marinus
ENSSLDG00000008469cpsf38990.767ENSPCIG00000009823CPSF39886.043Phascolarctos_cinereus
ENSSLDG00000008469cpsf39791.983ENSPFOG00000015922cpsf310091.983Poecilia_formosa
ENSSLDG00000008469cpsf39987.112ENSPFOG00000010418-10088.406Poecilia_formosa
ENSSLDG00000008469cpsf35782.469ENSPLAG00000021300-10082.469Poecilia_latipinna
ENSSLDG00000008469cpsf39791.983ENSPLAG00000000882cpsf310091.983Poecilia_latipinna
ENSSLDG00000008469cpsf39792.128ENSPMEG00000018309cpsf310092.128Poecilia_mexicana
ENSSLDG00000008469cpsf38890.080ENSPREG00000014875cpsf310083.673Poecilia_reticulata
ENSSLDG00000008469cpsf39783.232ENSPREG00000004482CPSF310083.232Poecilia_reticulata
ENSSLDG00000008469cpsf39681.351ENSPPYG00000012666CPSF39981.351Pongo_abelii
ENSSLDG00000008469cpsf38364.850ENSPCAG00000015042CPSF39064.850Procavia_capensis
ENSSLDG00000008469cpsf38685.567ENSPCOG00000023016CPSF39985.567Propithecus_coquereli
ENSSLDG00000008469cpsf39190.847ENSPVAG00000005324CPSF39985.777Pteropus_vampyrus
ENSSLDG00000008469cpsf38390.926ENSPNYG00000021047CPSF39091.144Pundamilia_nyererei
ENSSLDG00000008469cpsf39794.315ENSPNYG00000004405cpsf310094.315Pundamilia_nyererei
ENSSLDG00000008469cpsf39393.000ENSPNAG00000023060cpsf39987.936Pygocentrus_nattereri
ENSSLDG00000008469cpsf39190.847ENSRNOG00000052418Cpsf39985.756Rattus_norvegicus
ENSSLDG00000008469cpsf39680.910ENSRBIG00000041615CPSF39982.016Rhinopithecus_bieti
ENSSLDG00000008469cpsf39190.847ENSRROG00000033792CPSF39985.609Rhinopithecus_roxellana
ENSSLDG00000008469cpsf39042.685YLR277CYSH18542.685Saccharomyces_cerevisiae
ENSSLDG00000008469cpsf38987.631ENSSBOG00000027263CPSF39782.556Saimiri_boliviensis_boliviensis
ENSSLDG00000008469cpsf39190.508ENSSHAG00000007024CPSF39985.463Sarcophilus_harrisii
ENSSLDG00000008469cpsf39789.666ENSSFOG00015002108cpsf310088.841Scleropages_formosus
ENSSLDG00000008469cpsf39392.333ENSSMAG00000020534CPSF39788.432Scophthalmus_maximus
ENSSLDG00000008469cpsf39789.030ENSSDUG00000018498CPSF310088.261Seriola_dumerili
ENSSLDG00000008469cpsf310099.574ENSSDUG00000002828cpsf310099.574Seriola_dumerili
ENSSLDG00000008469cpsf38782.552ENSSARG00000005186CPSF39082.552Sorex_araneus
ENSSLDG00000008469cpsf38989.619ENSSPUG00000015525CPSF39784.305Sphenodon_punctatus
ENSSLDG00000008469cpsf39795.190ENSSPAG00000018579cpsf310095.190Stegastes_partitus
ENSSLDG00000008469cpsf39788.261ENSSPAG00000002906CPSF310088.261Stegastes_partitus
ENSSLDG00000008469cpsf39685.903ENSSSCG00000020799CPSF39985.903Sus_scrofa
ENSSLDG00000008469cpsf39190.694ENSTGUG00000013016CPSF310085.234Taeniopygia_guttata
ENSSLDG00000008469cpsf35773.333ENSTRUG00000013905CPSF39973.333Takifugu_rubripes
ENSSLDG00000008469cpsf39791.679ENSTRUG00000007030cpsf39891.679Takifugu_rubripes
ENSSLDG00000008469cpsf38290.385ENSTBEG00000002707CPSF38490.385Tupaia_belangeri
ENSSLDG00000008469cpsf38472.881ENSTTRG00000000861CPSF38772.881Tursiops_truncatus
ENSSLDG00000008469cpsf39190.847ENSUAMG00000007535CPSF39586.061Ursus_americanus
ENSSLDG00000008469cpsf38690.794ENSUMAG00000003676CPSF39985.581Ursus_maritimus
ENSSLDG00000008469cpsf38991.115ENSVPAG00000008041CPSF310086.120Vicugna_pacos
ENSSLDG00000008469cpsf39685.903ENSVVUG00000002194CPSF39985.903Vulpes_vulpes
ENSSLDG00000008469cpsf39984.961ENSXETG00000008263cpsf39984.928Xenopus_tropicalis
ENSSLDG00000008469cpsf35281.183ENSXCOG00000000957-8781.183Xiphophorus_couchianus
ENSSLDG00000008469cpsf39792.128ENSXCOG00000019695cpsf310092.128Xiphophorus_couchianus
ENSSLDG00000008469cpsf39792.420ENSXMAG00000009784cpsf310092.420Xiphophorus_maculatus
ENSSLDG00000008469cpsf39789.507ENSXMAG00000027291CPSF310088.551Xiphophorus_maculatus

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