EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000009353 (Gene tree)
Gene ID: -
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding protein fox-1 homolog 1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 335252 bases
Position: chrPEQF01099165.1:1421345-1756596
Accession: 111667243
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000011786	Fox-1_C	PF12414.8	3.2e-27	1	1
ENSSLDP00000011797	Fox-1_C	PF12414.8	3.2e-27	1	1
ENSSLDP00000011813	Fox-1_C	PF12414.8	3.6e-27	1	1
ENSSLDP00000011776	Fox-1_C	PF12414.8	6.3e-25	1	2
ENSSLDP00000011776	Fox-1_C	PF12414.8	6.3e-25	2	2
ENSSLDP00000011776	RRM_1	PF00076.22	1.1e-17	1	1
ENSSLDP00000011786	RRM_1	PF00076.22	1.2e-17	1	1
ENSSLDP00000011797	RRM_1	PF00076.22	1.2e-17	1	1
ENSSLDP00000011813	RRM_1	PF00076.22	1.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000012246	-	1437	XM_023422888	ENSSLDP00000011813	339 (aa)	XP_023278656	-
ENSSLDT00000012231	-	1097	-	ENSSLDP00000011797	316 (aa)	-	-
ENSSLDT00000012220	-	1201	-	ENSSLDP00000011786	316 (aa)	-	-
ENSSLDT00000012210	-	1008	XM_023422890	ENSSLDP00000011776	335 (aa)	XP_023278658	-

Gene Model

Click here to download ENSSLDG00000009353's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000009353's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000009353	rbfox1	92	67.577	ENSSLDG00000000149	rbfox3b	85	68.571
ENSSLDG00000009353	rbfox1	72	58.175	ENSSLDG00000023983	rbfox2	51	64.135
ENSSLDG00000009353	rbfox1	91	66.667	ENSSLDG00000016098	-	91	68.731
ENSSLDG00000009353	rbfox1	86	54.902	ENSSLDG00000018052	-	71	56.156
ENSSLDG00000009353	rbfox1	76	55.705	ENSSLDG00000022256	rbfox1l	83	52.744

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000009353	rbfox1	97	78.641	ENSG00000078328	RBFOX1	96	71.859	Homo_sapiens
ENSSLDG00000009353	rbfox1	98	95.783	ENSAPOG00000003197	rbfox1	81	95.783	Acanthochromis_polyacanthus
ENSSLDG00000009353	rbfox1	75	74.153	ENSAMEG00000008605	RBFOX1	93	72.400	Ailuropoda_melanoleuca
ENSSLDG00000009353	rbfox1	72	73.622	ENSACIG00000005478	rbfox1	81	64.907	Amphilophus_citrinellus
ENSSLDG00000009353	rbfox1	89	95.714	ENSAOCG00000008283	rbfox1	97	94.718	Amphiprion_ocellaris
ENSSLDG00000009353	rbfox1	93	83.051	ENSAPEG00000010636	rbfox1	99	72.527	Amphiprion_percula
ENSSLDG00000009353	rbfox1	92	93.930	ENSATEG00000007513	rbfox1	100	94.249	Anabas_testudineus
ENSSLDG00000009353	rbfox1	97	70.871	ENSAPLG00000013263	RBFOX1	84	72.353	Anas_platyrhynchos
ENSSLDG00000009353	rbfox1	97	67.857	ENSACAG00000004013	RBFOX1	85	69.679	Anolis_carolinensis
ENSSLDG00000009353	rbfox1	95	78.477	ENSANAG00000029527	RBFOX1	83	79.233	Aotus_nancymaae
ENSSLDG00000009353	rbfox1	78	77.239	ENSAMXG00000002431	rbfox1	73	77.239	Astyanax_mexicanus
ENSSLDG00000009353	rbfox1	95	71.341	ENSBTAG00000007210	RBFOX1	85	71.554	Bos_taurus
ENSSLDG00000009353	rbfox1	93	77.474	ENSCJAG00000017351	RBFOX1	83	76.780	Callithrix_jacchus
ENSSLDG00000009353	rbfox1	93	70.312	ENSCAFG00000019082	RBFOX1	81	72.434	Canis_familiaris
ENSSLDG00000009353	rbfox1	82	69.338	ENSCAFG00020024881	RBFOX1	79	68.106	Canis_lupus_dingo
ENSSLDG00000009353	rbfox1	95	71.646	ENSCHIG00000023549	RBFOX1	85	71.554	Capra_hircus
ENSSLDG00000009353	rbfox1	95	79.000	ENSTSYG00000005334	RBFOX1	88	77.743	Carlito_syrichta
ENSSLDG00000009353	rbfox1	95	72.171	ENSCAPG00000017669	RBFOX1	87	72.647	Cavia_aperea
ENSSLDG00000009353	rbfox1	97	72.321	ENSCPOG00000011314	RBFOX1	86	72.647	Cavia_porcellus
ENSSLDG00000009353	rbfox1	95	78.477	ENSCCAG00000023031	RBFOX1	83	79.233	Cebus_capucinus
ENSSLDG00000009353	rbfox1	95	78.146	ENSCATG00000033816	RBFOX1	83	78.594	Cercocebus_atys
ENSSLDG00000009353	rbfox1	97	71.726	ENSCLAG00000012761	RBFOX1	85	72.353	Chinchilla_lanigera
ENSSLDG00000009353	rbfox1	95	71.646	ENSCSAG00000008739	RBFOX1	85	70.186	Chlorocebus_sabaeus
ENSSLDG00000009353	rbfox1	64	84.000	ENSCHOG00000012843	RBFOX1	51	71.552	Choloepus_hoffmanni
ENSSLDG00000009353	rbfox1	98	79.341	ENSCPBG00000026626	RBFOX1	85	72.141	Chrysemys_picta_bellii
ENSSLDG00000009353	rbfox1	95	78.146	ENSCANG00000033125	RBFOX1	83	78.594	Colobus_angolensis_palliatus
ENSSLDG00000009353	rbfox1	97	71.429	ENSCGRG00001013729	Rbfox1	85	71.765	Cricetulus_griseus_chok1gshd
ENSSLDG00000009353	rbfox1	97	71.429	ENSCGRG00000003272	Rbfox1	85	71.765	Cricetulus_griseus_crigri
ENSSLDG00000009353	rbfox1	91	84.536	ENSCSEG00000008840	rbfox1	89	78.182	Cynoglossus_semilaevis
ENSSLDG00000009353	rbfox1	97	78.065	ENSDARG00000014746	rbfox1	100	79.808	Danio_rerio
ENSSLDG00000009353	rbfox1	95	71.429	ENSDNOG00000043612	RBFOX1	81	72.141	Dasypus_novemcinctus
ENSSLDG00000009353	rbfox1	95	70.122	ENSDORG00000010024	Rbfox1	87	70.554	Dipodomys_ordii
ENSSLDG00000009353	rbfox1	93	57.812	ENSETEG00000003771	RBFOX1	81	59.824	Echinops_telfairi
ENSSLDG00000009353	rbfox1	98	73.130	ENSEASG00005011599	RBFOX1	85	72.434	Equus_asinus_asinus
ENSSLDG00000009353	rbfox1	98	73.130	ENSECAG00000012667	RBFOX1	85	70.497	Equus_caballus
ENSSLDG00000009353	rbfox1	98	78.743	ENSFCAG00000025322	RBFOX1	77	78.743	Felis_catus
ENSSLDG00000009353	rbfox1	97	70.710	ENSFALG00000004027	RBFOX1	95	71.856	Ficedula_albicollis
ENSSLDG00000009353	rbfox1	97	72.024	ENSFDAG00000007388	RBFOX1	85	72.353	Fukomys_damarensis
ENSSLDG00000009353	rbfox1	98	79.341	ENSGALG00000034325	RBFOX1	82	79.341	Gallus_gallus
ENSSLDG00000009353	rbfox1	93	77.474	ENSGAGG00000023681	RBFOX1	89	72.353	Gopherus_agassizii
ENSSLDG00000009353	rbfox1	95	78.146	ENSGGOG00000016871	-	88	75.851	Gorilla_gorilla
ENSSLDG00000009353	rbfox1	97	72.024	ENSHGLG00000016944	RBFOX1	85	72.353	Heterocephalus_glaber_female
ENSSLDG00000009353	rbfox1	97	72.024	ENSHGLG00100003272	RBFOX1	85	72.353	Heterocephalus_glaber_male
ENSSLDG00000009353	rbfox1	97	82.849	ENSHCOG00000016419	rbfox1	98	83.478	Hippocampus_comes
ENSSLDG00000009353	rbfox1	98	76.418	ENSIPUG00000015215	rbfox1	89	78.275	Ictalurus_punctatus
ENSSLDG00000009353	rbfox1	97	72.321	ENSSTOG00000000322	RBFOX1	86	72.647	Ictidomys_tridecemlineatus
ENSSLDG00000009353	rbfox1	97	70.833	ENSJJAG00000002575	Rbfox1	84	72.189	Jaculus_jaculus
ENSSLDG00000009353	rbfox1	95	92.027	ENSLBEG00000014659	rbfox1	93	83.832	Labrus_bergylta
ENSSLDG00000009353	rbfox1	95	71.988	ENSLOCG00000006675	rbfox1	85	72.595	Lepisosteus_oculatus
ENSSLDG00000009353	rbfox1	64	78.261	ENSLAFG00000011480	RBFOX1	87	75.093	Loxodonta_africana
ENSSLDG00000009353	rbfox1	95	78.146	ENSMFAG00000036447	RBFOX1	83	78.594	Macaca_fascicularis
ENSSLDG00000009353	rbfox1	95	78.146	ENSMMUG00000003458	RBFOX1	83	78.594	Macaca_mulatta
ENSSLDG00000009353	rbfox1	95	78.405	ENSMNEG00000032034	RBFOX1	84	72.059	Macaca_nemestrina
ENSSLDG00000009353	rbfox1	95	78.146	ENSMLEG00000015382	RBFOX1	83	78.594	Mandrillus_leucophaeus
ENSSLDG00000009353	rbfox1	89	91.786	ENSMAMG00000003142	rbfox1	97	90.071	Mastacembelus_armatus
ENSSLDG00000009353	rbfox1	86	71.572	ENSMGAG00000008606	RBFOX1	96	71.284	Meleagris_gallopavo
ENSSLDG00000009353	rbfox1	95	43.987	ENSMAUG00000020570	Rbfox1	83	44.164	Mesocricetus_auratus
ENSSLDG00000009353	rbfox1	95	77.815	ENSMICG00000034286	RBFOX1	84	77.116	Microcebus_murinus
ENSSLDG00000009353	rbfox1	97	71.429	ENSMOCG00000020932	Rbfox1	88	71.765	Microtus_ochrogaster
ENSSLDG00000009353	rbfox1	97	87.385	ENSMMOG00000009716	rbfox1	93	87.385	Mola_mola
ENSSLDG00000009353	rbfox1	91	73.016	ENSMODG00000005826	RBFOX1	90	70.497	Monodelphis_domestica
ENSSLDG00000009353	rbfox1	98	90.663	ENSMALG00000003337	rbfox1	84	85.670	Monopterus_albus
ENSSLDG00000009353	rbfox1	97	71.429	MGP_CAROLIEiJ_G0020427	Rbfox1	85	71.765	Mus_caroli
ENSSLDG00000009353	rbfox1	97	71.726	ENSMUSG00000008658	Rbfox1	98	70.530	Mus_musculus
ENSSLDG00000009353	rbfox1	97	71.429	MGP_PahariEiJ_G0016135	Rbfox1	85	71.765	Mus_pahari
ENSSLDG00000009353	rbfox1	97	71.429	MGP_SPRETEiJ_G0021321	Rbfox1	85	71.765	Mus_spretus
ENSSLDG00000009353	rbfox1	95	71.429	ENSMPUG00000014822	RBFOX1	82	70.262	Mustela_putorius_furo
ENSSLDG00000009353	rbfox1	64	78.603	ENSMLUG00000015896	RBFOX1	87	75.373	Myotis_lucifugus
ENSSLDG00000009353	rbfox1	97	70.833	ENSNGAG00000023276	Rbfox1	87	72.059	Nannospalax_galili
ENSSLDG00000009353	rbfox1	97	67.492	ENSNBRG00000011084	rbfox1	81	65.507	Neolamprologus_brichardi
ENSSLDG00000009353	rbfox1	95	77.815	ENSNLEG00000010017	-	83	78.275	Nomascus_leucogenys
ENSSLDG00000009353	rbfox1	69	84.000	ENSMEUG00000012525	RBFOX1	55	73.200	Notamacropus_eugenii
ENSSLDG00000009353	rbfox1	75	74.153	ENSOPRG00000006199	-	57	69.549	Ochotona_princeps
ENSSLDG00000009353	rbfox1	97	72.321	ENSODEG00000013166	RBFOX1	85	72.647	Octodon_degus
ENSSLDG00000009353	rbfox1	95	71.341	ENSOANG00000002379	RBFOX1	85	69.876	Ornithorhynchus_anatinus
ENSSLDG00000009353	rbfox1	77	73.663	ENSOCUG00000001205	-	100	73.663	Oryctolagus_cuniculus
ENSSLDG00000009353	rbfox1	97	70.238	ENSOGAG00000025535	RBFOX1	85	72.059	Otolemur_garnettii
ENSSLDG00000009353	rbfox1	76	64.315	ENSOARG00000005135	RBFOX1	87	64.315	Ovis_aries
ENSSLDG00000009353	rbfox1	95	78.667	ENSPPAG00000036238	-	86	78.594	Pan_paniscus
ENSSLDG00000009353	rbfox1	95	77.815	ENSPPRG00000006546	RBFOX1	83	78.914	Panthera_pardus
ENSSLDG00000009353	rbfox1	97	62.145	ENSPTIG00000021154	RBFOX1	85	64.890	Panthera_tigris_altaica
ENSSLDG00000009353	rbfox1	95	78.146	ENSPTRG00000007744	RBFOX1	83	78.594	Pan_troglodytes
ENSSLDG00000009353	rbfox1	95	78.146	ENSPANG00000026500	RBFOX1	83	78.594	Papio_anubis
ENSSLDG00000009353	rbfox1	92	80.635	ENSPKIG00000019353	rbfox1	89	80.635	Paramormyrops_kingsleyae
ENSSLDG00000009353	rbfox1	98	78.443	ENSPKIG00000009667	-	87	78.095	Paramormyrops_kingsleyae
ENSSLDG00000009353	rbfox1	95	71.951	ENSPSIG00000006523	RBFOX1	84	72.353	Pelodiscus_sinensis
ENSSLDG00000009353	rbfox1	97	71.429	ENSPEMG00000017607	Rbfox1	85	71.765	Peromyscus_maniculatus_bairdii
ENSSLDG00000009353	rbfox1	61	74.590	ENSPCIG00000026887	RBFOX1	86	77.459	Phascolarctos_cinereus
ENSSLDG00000009353	rbfox1	95	71.429	ENSPPYG00000007079	-	82	69.971	Pongo_abelii
ENSSLDG00000009353	rbfox1	93	64.375	ENSPCAG00000002630	RBFOX1	89	66.862	Procavia_capensis
ENSSLDG00000009353	rbfox1	95	78.146	ENSPCOG00000025687	RBFOX1	84	77.429	Propithecus_coquereli
ENSSLDG00000009353	rbfox1	93	69.062	ENSPVAG00000013467	RBFOX1	81	68.421	Pteropus_vampyrus
ENSSLDG00000009353	rbfox1	91	74.593	ENSPNAG00000023109	rbfox1	89	74.398	Pygocentrus_nattereri
ENSSLDG00000009353	rbfox1	95	70.517	ENSRNOG00000002827	Rbfox1	85	69.040	Rattus_norvegicus
ENSSLDG00000009353	rbfox1	95	78.667	ENSRBIG00000044478	RBFOX1	86	78.594	Rhinopithecus_bieti
ENSSLDG00000009353	rbfox1	95	78.146	ENSRROG00000044411	RBFOX1	94	70.414	Rhinopithecus_roxellana
ENSSLDG00000009353	rbfox1	95	78.146	ENSSBOG00000033726	RBFOX1	83	79.553	Saimiri_boliviensis_boliviensis
ENSSLDG00000009353	rbfox1	97	70.833	ENSSHAG00000009257	RBFOX1	89	77.027	Sarcophilus_harrisii
ENSSLDG00000009353	rbfox1	88	72.297	ENSSFOG00015023675	rbfox1	82	71.622	Scleropages_formosus
ENSSLDG00000009353	rbfox1	99	67.967	ENSSFOG00015009955	-	90	68.156	Scleropages_formosus
ENSSLDG00000009353	rbfox1	98	93.694	ENSSMAG00000015505	rbfox1	86	93.694	Scophthalmus_maximus
ENSSLDG00000009353	rbfox1	95	96.346	ENSSDUG00000016413	rbfox1	84	100.000	Seriola_dumerili
ENSSLDG00000009353	rbfox1	88	78.914	ENSSPUG00000009732	RBFOX1	87	79.553	Sphenodon_punctatus
ENSSLDG00000009353	rbfox1	95	94.667	ENSSPAG00000009723	rbfox1	85	92.953	Stegastes_partitus
ENSSLDG00000009353	rbfox1	95	71.125	ENSSSCG00000007917	RBFOX1	90	69.876	Sus_scrofa
ENSSLDG00000009353	rbfox1	95	72.256	ENSTGUG00000004562	RBFOX1	87	72.647	Taeniopygia_guttata
ENSSLDG00000009353	rbfox1	95	90.365	ENSTRUG00000020940	rbfox1	85	90.492	Takifugu_rubripes
ENSSLDG00000009353	rbfox1	67	63.415	ENSTNIG00000002567	rbfox1	100	63.415	Tetraodon_nigroviridis
ENSSLDG00000009353	rbfox1	93	70.312	ENSTTRG00000005700	RBFOX1	81	71.848	Tursiops_truncatus
ENSSLDG00000009353	rbfox1	88	78.033	ENSUAMG00000024633	RBFOX1	88	77.705	Ursus_americanus
ENSSLDG00000009353	rbfox1	88	70.130	ENSUMAG00000003579	RBFOX1	84	67.722	Ursus_maritimus
ENSSLDG00000009353	rbfox1	67	73.978	ENSVPAG00000001284	RBFOX1	64	74.721	Vicugna_pacos
ENSSLDG00000009353	rbfox1	98	78.743	ENSVVUG00000017311	RBFOX1	77	78.743	Vulpes_vulpes