EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000009667 (Gene tree)
Gene ID: -
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 17452 bases
Position: chrPEQF01098955.1:997887-1015338
Accession: 111659298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000012213	PUF	PF00806.19	1.3e-69	1	8
ENSSLDP00000012213	PUF	PF00806.19	1.3e-69	2	8
ENSSLDP00000012213	PUF	PF00806.19	1.3e-69	3	8
ENSSLDP00000012213	PUF	PF00806.19	1.3e-69	4	8
ENSSLDP00000012213	PUF	PF00806.19	1.3e-69	5	8
ENSSLDP00000012213	PUF	PF00806.19	1.3e-69	6	8
ENSSLDP00000012213	PUF	PF00806.19	1.3e-69	7	8
ENSSLDP00000012213	PUF	PF00806.19	1.3e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000012659	-	3192	XM_023412190	ENSSLDP00000012213	1063 (aa)	XP_023267958	-

Gene Model

Click here to download ENSSLDG00000009667's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000009667's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000009667	pum1	96	64.912	ENSSLDG00000000981	pum2	53	78.195

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000009667	pum1	93	91.084	ENSG00000134644	PUM1	94	91.566	Homo_sapiens
ENSSLDG00000009667	pum1	100	99.365	ENSAPOG00000021632	pum1	94	99.365	Acanthochromis_polyacanthus
ENSSLDG00000009667	pum1	100	78.594	ENSAMEG00000017656	PUM1	93	75.959	Ailuropoda_melanoleuca
ENSSLDG00000009667	pum1	100	98.730	ENSACIG00000021013	pum1	94	98.730	Amphilophus_citrinellus
ENSSLDG00000009667	pum1	100	99.365	ENSAOCG00000003944	pum1	94	99.365	Amphiprion_ocellaris
ENSSLDG00000009667	pum1	100	99.365	ENSAPEG00000014550	pum1	94	99.365	Amphiprion_percula
ENSSLDG00000009667	pum1	100	99.153	ENSATEG00000016004	pum1	94	99.153	Anabas_testudineus
ENSSLDG00000009667	pum1	100	79.296	ENSAPLG00000009351	PUM1	95	76.452	Anas_platyrhynchos
ENSSLDG00000009667	pum1	100	78.505	ENSACAG00000000682	PUM1	94	77.882	Anolis_carolinensis
ENSSLDG00000009667	pum1	92	90.843	ENSANAG00000027865	PUM1	95	91.325	Aotus_nancymaae
ENSSLDG00000009667	pum1	91	98.730	ENSACLG00000019354	pum1	93	98.730	Astatotilapia_calliptera
ENSSLDG00000009667	pum1	100	82.983	ENSAMXG00000020607	pum1	91	82.563	Astyanax_mexicanus
ENSSLDG00000009667	pum1	93	91.566	ENSBTAG00000018979	PUM1	95	92.048	Bos_taurus
ENSSLDG00000009667	pum1	93	91.084	ENSCJAG00000006035	PUM1	100	81.188	Callithrix_jacchus
ENSSLDG00000009667	pum1	100	77.259	ENSCAFG00000011205	PUM1	60	88.783	Canis_familiaris
ENSSLDG00000009667	pum1	92	78.894	ENSCAFG00020024616	PUM1	98	81.312	Canis_lupus_dingo
ENSSLDG00000009667	pum1	93	91.084	ENSCHIG00000012952	PUM1	95	91.566	Capra_hircus
ENSSLDG00000009667	pum1	100	78.468	ENSTSYG00000008868	PUM1	100	81.188	Carlito_syrichta
ENSSLDG00000009667	pum1	100	78.468	ENSCPOG00000031613	PUM1	100	80.941	Cavia_porcellus
ENSSLDG00000009667	pum1	93	91.566	ENSCATG00000017991	PUM1	100	81.188	Cercocebus_atys
ENSSLDG00000009667	pum1	93	90.843	ENSCLAG00000007662	PUM1	100	80.941	Chinchilla_lanigera
ENSSLDG00000009667	pum1	100	77.380	ENSCSAG00000001028	PUM1	96	74.667	Chlorocebus_sabaeus
ENSSLDG00000009667	pum1	92	66.594	ENSCHOG00000010245	PUM1	88	65.700	Choloepus_hoffmanni
ENSSLDG00000009667	pum1	93	91.807	ENSCPBG00000009288	PUM1	100	81.436	Chrysemys_picta_bellii
ENSSLDG00000009667	pum1	93	91.084	ENSCANG00000042606	PUM1	95	91.566	Colobus_angolensis_palliatus
ENSSLDG00000009667	pum1	100	78.320	ENSCGRG00001024949	Pum1	100	82.818	Cricetulus_griseus_chok1gshd
ENSSLDG00000009667	pum1	100	78.320	ENSCGRG00000014197	Pum1	100	82.818	Cricetulus_griseus_crigri
ENSSLDG00000009667	pum1	91	97.149	ENSCSEG00000015981	pum1	93	97.149	Cynoglossus_semilaevis
ENSSLDG00000009667	pum1	100	97.566	ENSCVAG00000007043	pum1	96	97.566	Cyprinodon_variegatus
ENSSLDG00000009667	pum1	100	84.342	ENSDARG00000099256	pum1	93	81.723	Danio_rerio
ENSSLDG00000009667	pum1	100	79.089	ENSDNOG00000010939	PUM1	95	76.556	Dasypus_novemcinctus
ENSSLDG00000009667	pum1	89	71.800	ENSETEG00000004355	PUM1	82	69.891	Echinops_telfairi
ENSSLDG00000009667	pum1	100	78.756	ENSEASG00005010813	PUM1	95	76.012	Equus_asinus_asinus
ENSSLDG00000009667	pum1	100	78.675	ENSECAG00000021369	PUM1	95	75.934	Equus_caballus
ENSSLDG00000009667	pum1	74	90.667	ENSEEUG00000003871	PUM1	70	91.111	Erinaceus_europaeus
ENSSLDG00000009667	pum1	100	89.518	ENSELUG00000002409	pum1	100	93.220	Esox_lucius
ENSSLDG00000009667	pum1	100	78.778	ENSFCAG00000010374	PUM1	100	81.312	Felis_catus
ENSSLDG00000009667	pum1	100	78.785	ENSFALG00000001214	PUM1	93	76.161	Ficedula_albicollis
ENSSLDG00000009667	pum1	100	78.468	ENSFDAG00000011319	PUM1	100	80.941	Fukomys_damarensis
ENSSLDG00000009667	pum1	100	90.651	ENSGMOG00000010491	pum1	93	90.756	Gadus_morhua
ENSSLDG00000009667	pum1	96	90.141	ENSGALG00000042598	PUM1	95	90.141	Gallus_gallus
ENSSLDG00000009667	pum1	100	98.095	ENSGAFG00000015617	pum1	94	98.095	Gambusia_affinis
ENSSLDG00000009667	pum1	100	96.842	ENSGACG00000005717	pum1	95	96.842	Gasterosteus_aculeatus
ENSSLDG00000009667	pum1	96	90.342	ENSGAGG00000001290	PUM1	95	90.342	Gopherus_agassizii
ENSSLDG00000009667	pum1	93	91.084	ENSGGOG00000011983	PUM1	95	91.566	Gorilla_gorilla
ENSSLDG00000009667	pum1	100	98.730	ENSHBUG00000018718	pum1	94	98.730	Haplochromis_burtoni
ENSSLDG00000009667	pum1	100	78.364	ENSHGLG00000013819	Pum1	100	80.817	Heterocephalus_glaber_female
ENSSLDG00000009667	pum1	100	78.364	ENSHGLG00100008621	Pum1	100	80.817	Heterocephalus_glaber_male
ENSSLDG00000009667	pum1	91	88.901	ENSHCOG00000005149	pum1	93	89.641	Hippocampus_comes
ENSSLDG00000009667	pum1	100	81.752	ENSIPUG00000020421	pum1	95	81.335	Ictalurus_punctatus
ENSSLDG00000009667	pum1	100	78.756	ENSSTOG00000010757	PUM1	100	81.188	Ictidomys_tridecemlineatus
ENSSLDG00000009667	pum1	100	78.756	ENSJJAG00000000530	Pum1	100	81.188	Jaculus_jaculus
ENSSLDG00000009667	pum1	100	98.413	ENSKMAG00000003481	pum1	94	98.413	Kryptolebias_marmoratus
ENSSLDG00000009667	pum1	100	98.095	ENSLBEG00000002527	pum1	94	98.095	Labrus_bergylta
ENSSLDG00000009667	pum1	100	77.593	ENSLACG00000017188	PUM1	93	73.597	Latimeria_chalumnae
ENSSLDG00000009667	pum1	100	83.804	ENSLOCG00000005210	pum1	95	82.550	Lepisosteus_oculatus
ENSSLDG00000009667	pum1	100	78.675	ENSLAFG00000003178	PUM1	95	76.452	Loxodonta_africana
ENSSLDG00000009667	pum1	93	91.566	ENSMFAG00000010291	PUM1	95	92.048	Macaca_fascicularis
ENSSLDG00000009667	pum1	93	91.084	ENSMMUG00000013520	PUM1	95	91.566	Macaca_mulatta
ENSSLDG00000009667	pum1	93	91.084	ENSMNEG00000034639	PUM1	95	91.566	Macaca_nemestrina
ENSSLDG00000009667	pum1	93	91.084	ENSMLEG00000038743	PUM1	95	91.566	Mandrillus_leucophaeus
ENSSLDG00000009667	pum1	100	98.730	ENSMAMG00000011606	pum1	94	98.730	Mastacembelus_armatus
ENSSLDG00000009667	pum1	100	98.730	ENSMZEG00005005834	pum1	94	98.730	Maylandia_zebra
ENSSLDG00000009667	pum1	100	79.482	ENSMGAG00000000724	PUM1	100	74.887	Meleagris_gallopavo
ENSSLDG00000009667	pum1	100	78.423	ENSMAUG00000022090	Pum1	100	83.045	Mesocricetus_auratus
ENSSLDG00000009667	pum1	93	90.843	ENSMICG00000007713	-	95	91.325	Microcebus_murinus
ENSSLDG00000009667	pum1	93	90.144	ENSMICG00000012213	-	95	88.675	Microcebus_murinus
ENSSLDG00000009667	pum1	100	78.549	ENSMOCG00000015463	Pum1	100	82.942	Microtus_ochrogaster
ENSSLDG00000009667	pum1	84	98.795	ENSMMOG00000019817	pum1	100	98.795	Mola_mola
ENSSLDG00000009667	pum1	100	78.261	ENSMODG00000017067	PUM1	95	75.726	Monodelphis_domestica
ENSSLDG00000009667	pum1	84	99.518	ENSMALG00000016399	pum1	92	99.518	Monopterus_albus
ENSSLDG00000009667	pum1	100	78.238	MGP_CAROLIEiJ_G0026549	Pum1	100	80.817	Mus_caroli
ENSSLDG00000009667	pum1	100	78.135	ENSMUSG00000028580	Pum1	100	80.693	Mus_musculus
ENSSLDG00000009667	pum1	100	78.135	MGP_PahariEiJ_G0028881	Pum1	100	80.693	Mus_pahari
ENSSLDG00000009667	pum1	100	78.031	MGP_SPRETEiJ_G0027529	Pum1	100	80.569	Mus_spretus
ENSSLDG00000009667	pum1	100	78.860	ENSMPUG00000015454	PUM1	95	76.012	Mustela_putorius_furo
ENSSLDG00000009667	pum1	100	78.571	ENSMLUG00000006490	PUM1	95	75.726	Myotis_lucifugus
ENSSLDG00000009667	pum1	100	78.653	ENSNGAG00000002378	Pum1	100	81.188	Nannospalax_galili
ENSSLDG00000009667	pum1	86	99.000	ENSNBRG00000010689	pum1	100	99.000	Neolamprologus_brichardi
ENSSLDG00000009667	pum1	93	87.952	ENSNLEG00000001151	PUM1	95	88.434	Nomascus_leucogenys
ENSSLDG00000009667	pum1	71	78.621	ENSMEUG00000000976	-	62	80.418	Notamacropus_eugenii
ENSSLDG00000009667	pum1	81	91.589	ENSOPRG00000001776	PUM1	70	91.589	Ochotona_princeps
ENSSLDG00000009667	pum1	100	78.549	ENSODEG00000003465	PUM1	100	80.941	Octodon_degus
ENSSLDG00000009667	pum1	100	99.153	ENSONIG00000002290	pum1	94	99.153	Oreochromis_niloticus
ENSSLDG00000009667	pum1	87	62.756	ENSOANG00000004902	-	94	60.410	Ornithorhynchus_anatinus
ENSSLDG00000009667	pum1	99	78.631	ENSOCUG00000008641	PUM1	95	75.884	Oryctolagus_cuniculus
ENSSLDG00000009667	pum1	100	97.893	ENSORLG00000011482	pum1	95	97.893	Oryzias_latipes
ENSSLDG00000009667	pum1	100	97.893	ENSORLG00020019461	pum1	95	97.893	Oryzias_latipes_hni
ENSSLDG00000009667	pum1	100	97.998	ENSORLG00015011375	pum1	95	97.998	Oryzias_latipes_hsok
ENSSLDG00000009667	pum1	86	98.554	ENSOMEG00000009312	pum1	92	98.554	Oryzias_melastigma
ENSSLDG00000009667	pum1	100	75.310	ENSOGAG00000011063	PUM1	95	72.671	Otolemur_garnettii
ENSSLDG00000009667	pum1	93	91.084	ENSOARG00000001899	PUM1	95	91.566	Ovis_aries
ENSSLDG00000009667	pum1	93	91.084	ENSPPAG00000044003	PUM1	95	91.566	Pan_paniscus
ENSSLDG00000009667	pum1	100	78.860	ENSPPRG00000001370	PUM1	100	81.312	Panthera_pardus
ENSSLDG00000009667	pum1	100	78.653	ENSPTIG00000010798	PUM1	100	81.312	Panthera_tigris_altaica
ENSSLDG00000009667	pum1	93	91.084	ENSPTRG00000000453	PUM1	95	91.566	Pan_troglodytes
ENSSLDG00000009667	pum1	93	91.566	ENSPANG00000016338	PUM1	95	92.048	Papio_anubis
ENSSLDG00000009667	pum1	95	92.530	ENSPKIG00000010578	pum1	95	77.926	Paramormyrops_kingsleyae
ENSSLDG00000009667	pum1	100	79.482	ENSPSIG00000014118	PUM1	98	74.458	Pelodiscus_sinensis
ENSSLDG00000009667	pum1	86	98.305	ENSPMGG00000005836	pum1	100	98.305	Periophthalmus_magnuspinnatus
ENSSLDG00000009667	pum1	100	78.423	ENSPEMG00000010009	Pum1	100	83.045	Peromyscus_maniculatus_bairdii
ENSSLDG00000009667	pum1	93	91.807	ENSPCIG00000014151	PUM1	95	91.566	Phascolarctos_cinereus
ENSSLDG00000009667	pum1	95	97.574	ENSPFOG00000007289	pum1	99	97.840	Poecilia_formosa
ENSSLDG00000009667	pum1	100	97.742	ENSPLAG00000007256	pum1	100	97.742	Poecilia_latipinna
ENSSLDG00000009667	pum1	91	97.672	ENSPMEG00000019543	pum1	93	97.672	Poecilia_mexicana
ENSSLDG00000009667	pum1	100	98.201	ENSPREG00000005195	pum1	100	97.458	Poecilia_reticulata
ENSSLDG00000009667	pum1	100	76.845	ENSPPYG00000001621	PUM1	96	74.265	Pongo_abelii
ENSSLDG00000009667	pum1	83	93.519	ENSPCAG00000001979	PUM1	73	93.519	Procavia_capensis
ENSSLDG00000009667	pum1	93	90.843	ENSPCOG00000004398	PUM1	95	91.325	Propithecus_coquereli
ENSSLDG00000009667	pum1	100	76.452	ENSPVAG00000005207	PUM1	93	73.805	Pteropus_vampyrus
ENSSLDG00000009667	pum1	100	98.836	ENSPNYG00000009518	pum1	94	98.836	Pundamilia_nyererei
ENSSLDG00000009667	pum1	100	83.508	ENSPNAG00000026728	pum1	100	82.037	Pygocentrus_nattereri
ENSSLDG00000009667	pum1	100	78.238	ENSRNOG00000011709	Pum1	95	75.597	Rattus_norvegicus
ENSSLDG00000009667	pum1	93	91.566	ENSRBIG00000042521	PUM1	95	92.048	Rhinopithecus_bieti
ENSSLDG00000009667	pum1	93	91.084	ENSRROG00000020156	PUM1	95	91.566	Rhinopithecus_roxellana
ENSSLDG00000009667	pum1	93	91.084	ENSSBOG00000032037	PUM1	95	91.566	Saimiri_boliviensis_boliviensis
ENSSLDG00000009667	pum1	100	78.261	ENSSHAG00000010918	PUM1	95	75.830	Sarcophilus_harrisii
ENSSLDG00000009667	pum1	100	97.884	ENSSMAG00000010918	pum1	94	97.884	Scophthalmus_maximus
ENSSLDG00000009667	pum1	100	100.000	ENSSDUG00000009021	pum1	93	100.000	Seriola_dumerili
ENSSLDG00000009667	pum1	98	80.111	ENSSARG00000003055	PUM1	85	79.395	Sorex_araneus
ENSSLDG00000009667	pum1	100	79.275	ENSSPUG00000006267	PUM1	95	76.428	Sphenodon_punctatus
ENSSLDG00000009667	pum1	100	99.471	ENSSPAG00000016636	pum1	94	99.471	Stegastes_partitus
ENSSLDG00000009667	pum1	100	88.934	ENSSSCG00000003591	PUM1	95	92.048	Sus_scrofa
ENSSLDG00000009667	pum1	100	98.201	ENSTRUG00000013121	pum1	100	99.153	Takifugu_rubripes
ENSSLDG00000009667	pum1	100	98.097	ENSTNIG00000016983	pum1	93	98.097	Tetraodon_nigroviridis
ENSSLDG00000009667	pum1	86	90.244	ENSTBEG00000013810	PUM1	84	90.244	Tupaia_belangeri
ENSSLDG00000009667	pum1	92	78.653	ENSTTRG00000007436	PUM1	84	76.012	Tursiops_truncatus
ENSSLDG00000009667	pum1	98	76.655	ENSUAMG00000018262	-	95	73.690	Ursus_americanus
ENSSLDG00000009667	pum1	53	91.566	ENSUMAG00000009211	PUM1	54	92.048	Ursus_maritimus
ENSSLDG00000009667	pum1	92	83.827	ENSVPAG00000005902	PUM1	88	81.683	Vicugna_pacos
ENSSLDG00000009667	pum1	100	78.675	ENSVVUG00000014631	PUM1	100	74.097	Vulpes_vulpes
ENSSLDG00000009667	pum1	100	74.277	ENSXETG00000012904	pum1	95	72.435	Xenopus_tropicalis
ENSSLDG00000009667	pum1	100	97.672	ENSXMAG00000002945	pum1	100	97.554	Xiphophorus_maculatus