EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000009700 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 4189 bases
Position: chrPEQF01098727.1:218079-222267
Accession: 111653837
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000012221	Smg4_UPF3	PF03467.15	1.9e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000012667	-	1392	XM_023404541	ENSSLDP00000012221	463 (aa)	XP_023260309	UPI000BBE59A5

Gene Model

Click here to download ENSSLDG00000009700's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000009700's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000009700	upf3a	88	57.407	ENSG00000169062	UPF3A	90	57.639	Homo_sapiens
ENSSLDG00000009700	upf3a	100	96.544	ENSAPOG00000013484	upf3a	100	96.544	Acanthochromis_polyacanthus
ENSSLDG00000009700	upf3a	98	92.227	ENSACIG00000020468	upf3a	99	92.227	Amphilophus_citrinellus
ENSSLDG00000009700	upf3a	64	61.889	ENSAOCG00000000706	upf3b	93	49.192	Amphiprion_ocellaris
ENSSLDG00000009700	upf3a	100	96.976	ENSAOCG00000020784	upf3a	100	96.976	Amphiprion_ocellaris
ENSSLDG00000009700	upf3a	100	96.976	ENSAPEG00000003519	upf3a	100	96.976	Amphiprion_percula
ENSSLDG00000009700	upf3a	100	94.816	ENSATEG00000005843	upf3a	100	94.816	Anabas_testudineus
ENSSLDG00000009700	upf3a	82	67.506	ENSACAG00000001540	UPF3A	99	64.524	Anolis_carolinensis
ENSSLDG00000009700	upf3a	83	46.024	ENSANAG00000025598	-	70	66.667	Aotus_nancymaae
ENSSLDG00000009700	upf3a	94	53.125	ENSANAG00000021713	UPF3A	99	53.542	Aotus_nancymaae
ENSSLDG00000009700	upf3a	82	51.716	ENSANAG00000021894	-	77	70.303	Aotus_nancymaae
ENSSLDG00000009700	upf3a	100	93.347	ENSACLG00000026274	upf3a	100	93.347	Astatotilapia_calliptera
ENSSLDG00000009700	upf3a	98	83.921	ENSAMXG00000002608	upf3a	99	83.736	Astyanax_mexicanus
ENSSLDG00000009700	upf3a	90	55.530	ENSCJAG00000019102	UPF3A	92	55.756	Callithrix_jacchus
ENSSLDG00000009700	upf3a	82	51.716	ENSCJAG00000004975	UPF3B	77	69.697	Callithrix_jacchus
ENSSLDG00000009700	upf3a	82	46.867	ENSCAFG00020004074	UPF3B	64	72.603	Canis_lupus_dingo
ENSSLDG00000009700	upf3a	88	54.398	ENSCHIG00000008682	UPF3A	85	54.630	Capra_hircus
ENSSLDG00000009700	upf3a	82	52.068	ENSTSYG00000014690	UPF3B	76	65.294	Carlito_syrichta
ENSSLDG00000009700	upf3a	76	54.881	ENSTSYG00000001918	UPF3A	99	54.881	Carlito_syrichta
ENSSLDG00000009700	upf3a	82	39.031	ENSCCAG00000029813	-	53	58.182	Cebus_capucinus
ENSSLDG00000009700	upf3a	90	55.982	ENSCCAG00000018406	UPF3A	97	54.741	Cebus_capucinus
ENSSLDG00000009700	upf3a	92	57.336	ENSCATG00000029733	UPF3A	94	57.336	Cercocebus_atys
ENSSLDG00000009700	upf3a	90	58.072	ENSCSAG00000017388	UPF3A	94	57.363	Chlorocebus_sabaeus
ENSSLDG00000009700	upf3a	99	91.775	ENSCSEG00000005106	upf3a	99	91.775	Cynoglossus_semilaevis
ENSSLDG00000009700	upf3a	100	88.362	ENSCVAG00000022333	upf3a	100	88.362	Cyprinodon_variegatus
ENSSLDG00000009700	upf3a	99	81.210	ENSDARG00000069297	upf3a	99	81.798	Danio_rerio
ENSSLDG00000009700	upf3a	81	60.902	ENSDNOG00000034391	UPF3A	90	61.654	Dasypus_novemcinctus
ENSSLDG00000009700	upf3a	92	52.258	ENSETEG00000010110	UPF3A	96	52.473	Echinops_telfairi
ENSSLDG00000009700	upf3a	82	48.500	ENSEASG00005012919	UPF3B	62	69.565	Equus_asinus_asinus
ENSSLDG00000009700	upf3a	82	48.500	ENSECAG00000016947	UPF3B	62	62.857	Equus_caballus
ENSSLDG00000009700	upf3a	98	83.514	ENSELUG00000011050	upf3a	99	83.333	Esox_lucius
ENSSLDG00000009700	upf3a	90	58.014	ENSFCAG00000014602	UPF3A	92	58.014	Felis_catus
ENSSLDG00000009700	upf3a	100	89.009	ENSGAFG00000021170	upf3a	100	89.009	Gambusia_affinis
ENSSLDG00000009700	upf3a	51	67.480	ENSGACG00000017435	upf3b	60	71.341	Gasterosteus_aculeatus
ENSSLDG00000009700	upf3a	69	83.750	ENSGACG00000001972	upf3a	100	83.750	Gasterosteus_aculeatus
ENSSLDG00000009700	upf3a	84	47.264	ENSGGOG00000041219	-	89	45.771	Gorilla_gorilla
ENSSLDG00000009700	upf3a	88	57.920	ENSGGOG00000015428	UPF3A	90	57.920	Gorilla_gorilla
ENSSLDG00000009700	upf3a	81	48.320	ENSGGOG00000043074	-	80	46.770	Gorilla_gorilla
ENSSLDG00000009700	upf3a	100	96.760	ENSHBUG00000011325	upf3a	100	96.760	Haplochromis_burtoni
ENSSLDG00000009700	upf3a	76	56.198	ENSHGLG00000001544	UPF3A	50	66.667	Heterocephalus_glaber_female
ENSSLDG00000009700	upf3a	76	56.198	ENSHGLG00100013244	UPF3A	50	66.667	Heterocephalus_glaber_male
ENSSLDG00000009700	upf3a	94	81.136	ENSHCOG00000013985	upf3a	94	81.591	Hippocampus_comes
ENSSLDG00000009700	upf3a	98	81.758	ENSIPUG00000023450	upf3a	99	81.579	Ictalurus_punctatus
ENSSLDG00000009700	upf3a	100	93.534	ENSKMAG00000004381	upf3a	100	93.534	Kryptolebias_marmoratus
ENSSLDG00000009700	upf3a	98	89.670	ENSLBEG00000021570	upf3a	100	89.716	Labrus_bergylta
ENSSLDG00000009700	upf3a	60	43.402	ENSLACG00000006645	UPF3A	66	87.500	Latimeria_chalumnae
ENSSLDG00000009700	upf3a	97	76.586	ENSLOCG00000002665	upf3a	98	76.586	Lepisosteus_oculatus
ENSSLDG00000009700	upf3a	90	56.250	ENSMFAG00000045016	UPF3A	94	55.329	Macaca_fascicularis
ENSSLDG00000009700	upf3a	87	58.537	ENSMMUG00000007449	UPF3A	94	57.143	Macaca_mulatta
ENSSLDG00000009700	upf3a	87	58.824	ENSMNEG00000036402	UPF3A	87	58.034	Macaca_nemestrina
ENSSLDG00000009700	upf3a	83	60.363	ENSMLEG00000014726	UPF3A	93	59.494	Mandrillus_leucophaeus
ENSSLDG00000009700	upf3a	100	92.067	ENSMAMG00000018364	upf3a	100	92.067	Mastacembelus_armatus
ENSSLDG00000009700	upf3a	100	93.347	ENSMZEG00005021571	upf3a	100	93.347	Maylandia_zebra
ENSSLDG00000009700	upf3a	85	64.303	ENSMGAG00000014837	UPF3A	99	64.303	Meleagris_gallopavo
ENSSLDG00000009700	upf3a	54	71.825	ENSMOCG00000000550	Upf3a	56	69.347	Microtus_ochrogaster
ENSSLDG00000009700	upf3a	100	89.583	ENSMMOG00000019751	upf3a	100	89.583	Mola_mola
ENSSLDG00000009700	upf3a	83	66.917	ENSMODG00000003159	UPF3A	98	65.485	Monodelphis_domestica
ENSSLDG00000009700	upf3a	82	59.645	MGP_PahariEiJ_G0021311	Upf3a	92	57.107	Mus_pahari
ENSSLDG00000009700	upf3a	91	55.677	ENSMPUG00000009139	UPF3A	94	55.677	Mustela_putorius_furo
ENSSLDG00000009700	upf3a	80	60.614	ENSMLUG00000015905	UPF3A	92	60.870	Myotis_lucifugus
ENSSLDG00000009700	upf3a	87	54.118	ENSNGAG00000019314	Upf3a	99	52.719	Nannospalax_galili
ENSSLDG00000009700	upf3a	100	96.544	ENSNBRG00000000828	upf3a	100	96.544	Neolamprologus_brichardi
ENSSLDG00000009700	upf3a	88	58.255	ENSNLEG00000007563	UPF3A	90	58.019	Nomascus_leucogenys
ENSSLDG00000009700	upf3a	100	95.708	ENSONIG00000006817	upf3a	100	95.708	Oreochromis_niloticus
ENSSLDG00000009700	upf3a	76	56.793	ENSOANG00000006985	-	95	56.183	Ornithorhynchus_anatinus
ENSSLDG00000009700	upf3a	100	87.152	ENSORLG00000010911	upf3a	100	87.152	Oryzias_latipes
ENSSLDG00000009700	upf3a	82	43.932	ENSORLG00020003758	upf3b	51	69.595	Oryzias_latipes_hni
ENSSLDG00000009700	upf3a	100	86.609	ENSORLG00020014317	upf3a	100	86.609	Oryzias_latipes_hni
ENSSLDG00000009700	upf3a	100	87.257	ENSORLG00015017339	upf3a	58	87.257	Oryzias_latipes_hsok
ENSSLDG00000009700	upf3a	100	88.769	ENSOMEG00000014425	upf3a	100	88.769	Oryzias_melastigma
ENSSLDG00000009700	upf3a	72	62.139	ENSOGAG00000004788	UPF3A	83	62.139	Otolemur_garnettii
ENSSLDG00000009700	upf3a	83	58.396	ENSOARG00000009004	UPF3A	83	58.396	Ovis_aries
ENSSLDG00000009700	upf3a	88	57.176	ENSPPAG00000042267	UPF3A	91	56.713	Pan_paniscus
ENSSLDG00000009700	upf3a	90	57.788	ENSPPRG00000025062	UPF3A	92	57.788	Panthera_pardus
ENSSLDG00000009700	upf3a	84	47.512	ENSPTRG00000041187	-	89	44.279	Pan_troglodytes
ENSSLDG00000009700	upf3a	84	44.030	ENSPTRG00000051640	-	90	42.289	Pan_troglodytes
ENSSLDG00000009700	upf3a	88	57.176	ENSPTRG00000006073	UPF3A	90	57.176	Pan_troglodytes
ENSSLDG00000009700	upf3a	88	59.434	ENSPANG00000004346	UPF3A	90	59.434	Papio_anubis
ENSSLDG00000009700	upf3a	89	50.000	ENSPKIG00000019226	upf3b	86	68.085	Paramormyrops_kingsleyae
ENSSLDG00000009700	upf3a	97	71.784	ENSPKIG00000004422	upf3a	100	71.020	Paramormyrops_kingsleyae
ENSSLDG00000009700	upf3a	83	67.424	ENSPSIG00000007468	UPF3A	96	67.424	Pelodiscus_sinensis
ENSSLDG00000009700	upf3a	100	84.124	ENSPMGG00000012696	upf3a	100	84.124	Periophthalmus_magnuspinnatus
ENSSLDG00000009700	upf3a	79	60.705	ENSPEMG00000019968	-	86	58.696	Peromyscus_maniculatus_bairdii
ENSSLDG00000009700	upf3a	73	70.354	ENSPCIG00000019590	-	90	68.447	Phascolarctos_cinereus
ENSSLDG00000009700	upf3a	100	89.633	ENSPFOG00000013222	upf3a	100	89.633	Poecilia_formosa
ENSSLDG00000009700	upf3a	98	88.403	ENSPLAG00000011960	upf3a	100	88.403	Poecilia_latipinna
ENSSLDG00000009700	upf3a	100	85.507	ENSPMEG00000000836	upf3a	100	85.507	Poecilia_mexicana
ENSSLDG00000009700	upf3a	88	57.407	ENSPPYG00000005536	UPF3A	90	57.639	Pongo_abelii
ENSSLDG00000009700	upf3a	87	44.977	ENSPCOG00000021960	UPF3B	51	70.732	Propithecus_coquereli
ENSSLDG00000009700	upf3a	82	57.868	ENSPVAG00000005656	UPF3A	81	55.062	Pteropus_vampyrus
ENSSLDG00000009700	upf3a	100	93.347	ENSPNYG00000011289	upf3a	100	93.347	Pundamilia_nyererei
ENSSLDG00000009700	upf3a	99	81.818	ENSPNAG00000019532	upf3a	100	82.057	Pygocentrus_nattereri
ENSSLDG00000009700	upf3a	83	51.069	ENSPNAG00000021528	upf3b	54	73.620	Pygocentrus_nattereri
ENSSLDG00000009700	upf3a	87	58.621	ENSRBIG00000034007	UPF3A	91	58.621	Rhinopithecus_bieti
ENSSLDG00000009700	upf3a	84	59.645	ENSRROG00000012212	UPF3A	84	59.645	Rhinopithecus_roxellana
ENSSLDG00000009700	upf3a	90	49.887	ENSSBOG00000029989	UPF3A	92	50.113	Saimiri_boliviensis_boliviensis
ENSSLDG00000009700	upf3a	82	51.707	ENSSBOG00000019740	UPF3B	78	71.166	Saimiri_boliviensis_boliviensis
ENSSLDG00000009700	upf3a	83	67.424	ENSSHAG00000009895	UPF3A	94	68.010	Sarcophilus_harrisii
ENSSLDG00000009700	upf3a	98	72.308	ENSSFOG00015021851	upf3a	99	71.272	Scleropages_formosus
ENSSLDG00000009700	upf3a	100	86.354	ENSSMAG00000003858	upf3a	100	87.576	Scophthalmus_maximus
ENSSLDG00000009700	upf3a	52	68.127	ENSSMAG00000012913	upf3b	54	73.171	Scophthalmus_maximus
ENSSLDG00000009700	upf3a	100	96.660	ENSSDUG00000009680	upf3a	100	96.660	Seriola_dumerili
ENSSLDG00000009700	upf3a	100	96.112	ENSSPAG00000007938	upf3a	100	96.112	Stegastes_partitus
ENSSLDG00000009700	upf3a	87	55.869	ENSSSCG00000024679	UPF3A	51	69.231	Sus_scrofa
ENSSLDG00000009700	upf3a	82	68.354	ENSTGUG00000009493	UPF3A	99	68.354	Taeniopygia_guttata
ENSSLDG00000009700	upf3a	98	88.326	ENSTRUG00000012730	upf3a	99	88.132	Takifugu_rubripes
ENSSLDG00000009700	upf3a	83	78.372	ENSTNIG00000014973	upf3a	99	77.863	Tetraodon_nigroviridis
ENSSLDG00000009700	upf3a	72	55.587	ENSTTRG00000015414	UPF3A	78	53.439	Tursiops_truncatus
ENSSLDG00000009700	upf3a	82	46.633	ENSUAMG00000024565	UPF3B	62	68.116	Ursus_americanus
ENSSLDG00000009700	upf3a	82	46.867	ENSVVUG00000011594	UPF3B	77	70.303	Vulpes_vulpes
ENSSLDG00000009700	upf3a	90	56.308	ENSXETG00000002572	upf3a	100	56.308	Xenopus_tropicalis
ENSSLDG00000009700	upf3a	83	45.792	ENSXETG00000007440	upf3b	71	71.779	Xenopus_tropicalis
ENSSLDG00000009700	upf3a	100	89.655	ENSXMAG00000013452	upf3a	100	89.655	Xiphophorus_maculatus