EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000009918 (Gene tree)
Gene ID: -
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 7211 bases
Position: chrPEQF01099062.1:231379-238589
Accession: 111664170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000012516	RRM_1	PF00076.22	7.4e-18	1	1
ENSSLDP00000012532	RRM_1	PF00076.22	1.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000012986	-	462	-	ENSSLDP00000012532	153 (aa)	-	-
ENSSLDT00000012970	-	1110	XM_023418663	ENSSLDP00000012516	369 (aa)	XP_023274431	-

Gene Model

Click here to download ENSSLDG00000009918's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000009918's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000009918	rbm42	100	96.471	ENSAPOG00000015109	rbm42	100	78.325	Acanthochromis_polyacanthus
ENSSLDG00000009918	rbm42	100	97.183	ENSACIG00000010771	rbm42	100	79.052	Amphilophus_citrinellus
ENSSLDG00000009918	rbm42	100	96.471	ENSAOCG00000008873	rbm42	100	78.325	Amphiprion_ocellaris
ENSSLDG00000009918	rbm42	100	96.471	ENSAPEG00000012051	rbm42	99	78.325	Amphiprion_percula
ENSSLDG00000009918	rbm42	100	91.765	ENSATEG00000000536	rbm42	100	77.475	Anabas_testudineus
ENSSLDG00000009918	rbm42	100	96.471	ENSACLG00000004988	rbm42	100	79.353	Astatotilapia_calliptera
ENSSLDG00000009918	rbm42	100	83.721	ENSAMXG00000016545	rbm42	100	71.835	Astyanax_mexicanus
ENSSLDG00000009918	rbm42	64	73.469	ENSCGRG00000016763	-	56	90.441	Cricetulus_griseus_crigri
ENSSLDG00000009918	rbm42	92	97.183	ENSCSEG00000010248	rbm42	100	74.559	Cynoglossus_semilaevis
ENSSLDG00000009918	rbm42	100	87.059	ENSCVAG00000015589	rbm42	100	69.249	Cyprinodon_variegatus
ENSSLDG00000009918	rbm42	100	82.716	ENSDARG00000039910	rbm42	100	60.284	Danio_rerio
ENSSLDG00000009918	rbm42	100	79.070	ENSELUG00000022403	rbm42	100	63.744	Esox_lucius
ENSSLDG00000009918	rbm42	78	77.592	ENSFHEG00000006764	rbm42	100	78.261	Fundulus_heteroclitus
ENSSLDG00000009918	rbm42	100	97.183	ENSGMOG00000012660	rbm42	100	65.281	Gadus_morhua
ENSSLDG00000009918	rbm42	79	74.834	ENSGAFG00000009059	rbm42	96	77.409	Gambusia_affinis
ENSSLDG00000009918	rbm42	100	82.353	ENSGACG00000004170	rbm42	100	76.427	Gasterosteus_aculeatus
ENSSLDG00000009918	rbm42	100	96.471	ENSHBUG00000011141	rbm42	100	79.104	Haplochromis_burtoni
ENSSLDG00000009918	rbm42	100	86.420	ENSHCOG00000021214	rbm42	100	70.690	Hippocampus_comes
ENSSLDG00000009918	rbm42	100	94.366	ENSIPUG00000022365	rbm42	99	66.986	Ictalurus_punctatus
ENSSLDG00000009918	rbm42	76	97.143	ENSKMAG00000015287	rbm42	99	68.194	Kryptolebias_marmoratus
ENSSLDG00000009918	rbm42	100	83.951	ENSLBEG00000017547	rbm42	100	76.790	Labrus_bergylta
ENSSLDG00000009918	rbm42	79	85.906	ENSLBEG00000004578	-	83	85.906	Labrus_bergylta
ENSSLDG00000009918	rbm42	100	95.775	ENSLOCG00000003368	rbm42	100	61.611	Lepisosteus_oculatus
ENSSLDG00000009918	rbm42	97	97.183	ENSMAMG00000006708	rbm42	100	78.818	Mastacembelus_armatus
ENSSLDG00000009918	rbm42	100	96.471	ENSMZEG00005025234	rbm42	100	79.353	Maylandia_zebra
ENSSLDG00000009918	rbm42	98	75.333	ENSMAUG00000011346	-	84	86.735	Mesocricetus_auratus
ENSSLDG00000009918	rbm42	100	79.587	ENSMALG00000015720	rbm42	100	79.587	Monopterus_albus
ENSSLDG00000009918	rbm42	100	97.183	ENSONIG00000008029	rbm42	100	78.186	Oreochromis_niloticus
ENSSLDG00000009918	rbm42	100	87.179	ENSORLG00015000659	rbm42	100	75.186	Oryzias_latipes_hsok
ENSSLDG00000009918	rbm42	66	85.714	ENSOMEG00000014332	rbm42	97	82.879	Oryzias_melastigma
ENSSLDG00000009918	rbm42	100	97.183	ENSPKIG00000015165	rbm42	100	66.748	Paramormyrops_kingsleyae
ENSSLDG00000009918	rbm42	100	77.778	ENSPMGG00000003569	rbm42	100	97.143	Periophthalmus_magnuspinnatus
ENSSLDG00000009918	rbm42	58	55.856	ENSPMAG00000008633	rbm42	62	56.838	Petromyzon_marinus
ENSSLDG00000009918	rbm42	100	83.529	ENSPFOG00000007701	rbm42	100	71.007	Poecilia_formosa
ENSSLDG00000009918	rbm42	100	83.529	ENSPLAG00000009405	rbm42	100	70.762	Poecilia_latipinna
ENSSLDG00000009918	rbm42	100	83.529	ENSPMEG00000010375	rbm42	100	71.253	Poecilia_mexicana
ENSSLDG00000009918	rbm42	100	83.529	ENSPREG00000018102	rbm42	100	75.196	Poecilia_reticulata
ENSSLDG00000009918	rbm42	100	96.471	ENSPNYG00000014460	rbm42	100	79.104	Pundamilia_nyererei
ENSSLDG00000009918	rbm42	100	85.393	ENSPNAG00000009961	rbm42	100	66.667	Pygocentrus_nattereri
ENSSLDG00000009918	rbm42	100	94.366	ENSSFOG00015019227	rbm42	100	64.678	Scleropages_formosus
ENSSLDG00000009918	rbm42	100	91.765	ENSSMAG00000011935	rbm42	100	78.378	Scophthalmus_maximus
ENSSLDG00000009918	rbm42	100	100.000	ENSSDUG00000004033	rbm42	100	87.931	Seriola_dumerili
ENSSLDG00000009918	rbm42	99	75.949	ENSSPUG00000011078	-	78	94.286	Sphenodon_punctatus
ENSSLDG00000009918	rbm42	100	95.238	ENSSPAG00000019871	rbm42	100	79.310	Stegastes_partitus
ENSSLDG00000009918	rbm42	100	85.882	ENSTRUG00000024586	-	76	72.750	Takifugu_rubripes
ENSSLDG00000009918	rbm42	98	86.585	ENSTNIG00000011669	rbm42	100	56.916	Tetraodon_nigroviridis
ENSSLDG00000009918	rbm42	100	71.569	ENSXETG00000017599	rbm42	77	65.152	Xenopus_tropicalis
ENSSLDG00000009918	rbm42	100	84.706	ENSXMAG00000012827	rbm42	100	76.240	Xiphophorus_maculatus