EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000010476 (Gene tree)
Gene ID: -
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 6359 bases
Position: chrPEQF01099380.1:732965-739323
Accession: 111672850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000013182	SRP54	PF00448.22	7.9e-77	1	1
ENSSLDP00000013182	SRP54_N	PF02881.19	4.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000013663	-	2284	XM_023430420	ENSSLDP00000013182	504 (aa)	XP_023286188	UPI000C6F9CFD

Gene Model

Click here to download ENSSLDG00000010476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000010476's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000010476	srp54	100	95.437	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSSLDG00000010476	srp54	100	99.603	ENSAPOG00000011314	srp54	100	99.603	Acanthochromis_polyacanthus
ENSSLDG00000010476	srp54	100	95.437	ENSAMEG00000015544	SRP54	100	95.437	Ailuropoda_melanoleuca
ENSSLDG00000010476	srp54	89	98.218	ENSACIG00000022831	srp54	97	98.218	Amphilophus_citrinellus
ENSSLDG00000010476	srp54	100	99.603	ENSAOCG00000019401	srp54	100	99.603	Amphiprion_ocellaris
ENSSLDG00000010476	srp54	100	99.603	ENSAPEG00000001977	srp54	100	99.603	Amphiprion_percula
ENSSLDG00000010476	srp54	100	99.008	ENSATEG00000013877	srp54	100	99.008	Anabas_testudineus
ENSSLDG00000010476	srp54	94	94.726	ENSAPLG00000010125	SRP54	95	94.726	Anas_platyrhynchos
ENSSLDG00000010476	srp54	86	91.705	ENSACAG00000010631	-	100	91.705	Anolis_carolinensis
ENSSLDG00000010476	srp54	100	94.841	ENSACAG00000002103	-	100	94.841	Anolis_carolinensis
ENSSLDG00000010476	srp54	65	79.154	ENSACAG00000001124	-	100	79.154	Anolis_carolinensis
ENSSLDG00000010476	srp54	100	95.437	ENSANAG00000022133	SRP54	100	95.437	Aotus_nancymaae
ENSSLDG00000010476	srp54	100	99.206	ENSACLG00000015866	srp54	100	99.206	Astatotilapia_calliptera
ENSSLDG00000010476	srp54	100	97.619	ENSAMXG00000032669	SRP54	100	97.619	Astyanax_mexicanus
ENSSLDG00000010476	srp54	100	95.437	ENSBTAG00000019085	SRP54	100	95.437	Bos_taurus
ENSSLDG00000010476	srp54	98	72.691	WBGene00009012	F21D5.7	100	72.691	Caenorhabditis_elegans
ENSSLDG00000010476	srp54	100	95.437	ENSCJAG00000006581	SRP54	100	95.437	Callithrix_jacchus
ENSSLDG00000010476	srp54	100	95.437	ENSCAFG00000013331	SRP54	100	95.437	Canis_familiaris
ENSSLDG00000010476	srp54	100	95.437	ENSCAFG00020023427	SRP54	100	95.437	Canis_lupus_dingo
ENSSLDG00000010476	srp54	100	95.437	ENSCHIG00000026345	SRP54	100	95.437	Capra_hircus
ENSSLDG00000010476	srp54	94	83.789	ENSTSYG00000035333	-	93	83.789	Carlito_syrichta
ENSSLDG00000010476	srp54	100	95.238	ENSTSYG00000002680	-	100	95.238	Carlito_syrichta
ENSSLDG00000010476	srp54	94	61.224	ENSCAPG00000008780	SRP54	100	61.224	Cavia_aperea
ENSSLDG00000010476	srp54	100	95.040	ENSCPOG00000003691	SRP54	100	95.040	Cavia_porcellus
ENSSLDG00000010476	srp54	90	94.762	ENSCCAG00000024179	SRP54	100	94.988	Cebus_capucinus
ENSSLDG00000010476	srp54	100	95.437	ENSCATG00000034083	SRP54	100	95.437	Cercocebus_atys
ENSSLDG00000010476	srp54	100	95.437	ENSCLAG00000015076	SRP54	100	95.437	Chinchilla_lanigera
ENSSLDG00000010476	srp54	100	95.437	ENSCSAG00000015575	SRP54	100	95.437	Chlorocebus_sabaeus
ENSSLDG00000010476	srp54	95	84.615	ENSCHOG00000008986	SRP54	100	84.615	Choloepus_hoffmanni
ENSSLDG00000010476	srp54	100	95.437	ENSCPBG00000026195	SRP54	100	95.437	Chrysemys_picta_bellii
ENSSLDG00000010476	srp54	100	82.540	ENSCING00000007380	-	100	82.540	Ciona_intestinalis
ENSSLDG00000010476	srp54	100	95.437	ENSCANG00000028532	SRP54	100	95.437	Colobus_angolensis_palliatus
ENSSLDG00000010476	srp54	100	95.833	ENSCGRG00001009525	-	100	95.833	Cricetulus_griseus_chok1gshd
ENSSLDG00000010476	srp54	76	96.104	ENSCGRG00000009453	-	89	96.104	Cricetulus_griseus_crigri
ENSSLDG00000010476	srp54	100	99.008	ENSCSEG00000012392	srp54	100	99.008	Cynoglossus_semilaevis
ENSSLDG00000010476	srp54	100	99.206	ENSCVAG00000010395	srp54	100	99.206	Cyprinodon_variegatus
ENSSLDG00000010476	srp54	100	98.016	ENSDARG00000098367	srp54	100	98.016	Danio_rerio
ENSSLDG00000010476	srp54	100	95.437	ENSDNOG00000032525	SRP54	100	95.437	Dasypus_novemcinctus
ENSSLDG00000010476	srp54	89	80.752	ENSDORG00000005159	-	98	80.752	Dipodomys_ordii
ENSSLDG00000010476	srp54	96	78.969	FBgn0010747	Srp54k	98	78.514	Drosophila_melanogaster
ENSSLDG00000010476	srp54	83	55.502	ENSETEG00000012102	-	99	55.502	Echinops_telfairi
ENSSLDG00000010476	srp54	100	94.643	ENSETEG00000016307	-	100	94.643	Echinops_telfairi
ENSSLDG00000010476	srp54	100	88.492	ENSEBUG00000009437	-	100	88.492	Eptatretus_burgeri
ENSSLDG00000010476	srp54	100	95.437	ENSEASG00005002057	SRP54	100	95.437	Equus_asinus_asinus
ENSSLDG00000010476	srp54	99	95.181	ENSECAG00000018042	SRP54	98	95.181	Equus_caballus
ENSSLDG00000010476	srp54	100	79.762	ENSEEUG00000001511	SRP54	100	79.762	Erinaceus_europaeus
ENSSLDG00000010476	srp54	100	97.619	ENSELUG00000003395	srp54	100	97.619	Esox_lucius
ENSSLDG00000010476	srp54	100	95.635	ENSFCAG00000032033	SRP54	100	95.635	Felis_catus
ENSSLDG00000010476	srp54	100	95.040	ENSFALG00000005995	SRP54	100	95.040	Ficedula_albicollis
ENSSLDG00000010476	srp54	100	95.437	ENSFDAG00000016767	SRP54	100	95.437	Fukomys_damarensis
ENSSLDG00000010476	srp54	100	99.206	ENSFHEG00000004263	srp54	100	99.206	Fundulus_heteroclitus
ENSSLDG00000010476	srp54	95	92.259	ENSGMOG00000011391	srp54	100	92.259	Gadus_morhua
ENSSLDG00000010476	srp54	100	95.040	ENSGALG00000023135	SRP54	100	95.040	Gallus_gallus
ENSSLDG00000010476	srp54	100	99.405	ENSGAFG00000011586	srp54	100	99.405	Gambusia_affinis
ENSSLDG00000010476	srp54	100	98.810	ENSGACG00000004181	srp54	100	98.810	Gasterosteus_aculeatus
ENSSLDG00000010476	srp54	100	95.437	ENSGAGG00000014766	SRP54	100	95.437	Gopherus_agassizii
ENSSLDG00000010476	srp54	100	95.437	ENSGGOG00000002926	SRP54	100	95.437	Gorilla_gorilla
ENSSLDG00000010476	srp54	100	99.206	ENSHBUG00000005678	srp54	100	99.206	Haplochromis_burtoni
ENSSLDG00000010476	srp54	100	95.437	ENSHGLG00000002850	SRP54	100	95.437	Heterocephalus_glaber_female
ENSSLDG00000010476	srp54	100	66.535	ENSHGLG00100007281	-	100	66.535	Heterocephalus_glaber_male
ENSSLDG00000010476	srp54	100	95.437	ENSHGLG00100005263	SRP54	100	95.437	Heterocephalus_glaber_male
ENSSLDG00000010476	srp54	100	97.817	ENSHCOG00000021127	srp54	100	97.817	Hippocampus_comes
ENSSLDG00000010476	srp54	100	97.222	ENSIPUG00000001420	srp54	100	97.222	Ictalurus_punctatus
ENSSLDG00000010476	srp54	100	95.437	ENSSTOG00000016023	SRP54	100	95.437	Ictidomys_tridecemlineatus
ENSSLDG00000010476	srp54	100	91.071	ENSJJAG00000013417	-	100	91.071	Jaculus_jaculus
ENSSLDG00000010476	srp54	87	74.091	ENSJJAG00000016404	-	100	74.091	Jaculus_jaculus
ENSSLDG00000010476	srp54	100	98.810	ENSKMAG00000007707	srp54	100	98.810	Kryptolebias_marmoratus
ENSSLDG00000010476	srp54	100	99.405	ENSLBEG00000018690	srp54	100	99.405	Labrus_bergylta
ENSSLDG00000010476	srp54	100	99.405	ENSLBEG00000021122	srp54	100	99.405	Labrus_bergylta
ENSSLDG00000010476	srp54	100	95.437	ENSLACG00000017890	SRP54	100	95.437	Latimeria_chalumnae
ENSSLDG00000010476	srp54	100	97.619	ENSLOCG00000009440	srp54	100	97.619	Lepisosteus_oculatus
ENSSLDG00000010476	srp54	100	95.437	ENSLAFG00000012007	SRP54	100	95.437	Loxodonta_africana
ENSSLDG00000010476	srp54	100	95.437	ENSMFAG00000044371	SRP54	100	95.437	Macaca_fascicularis
ENSSLDG00000010476	srp54	100	95.437	ENSMMUG00000015073	FAM177A1	100	95.437	Macaca_mulatta
ENSSLDG00000010476	srp54	100	95.437	ENSMNEG00000006947	SRP54	100	95.437	Macaca_nemestrina
ENSSLDG00000010476	srp54	100	95.437	ENSMLEG00000042251	SRP54	100	95.437	Mandrillus_leucophaeus
ENSSLDG00000010476	srp54	100	99.206	ENSMAMG00000004803	srp54	100	99.206	Mastacembelus_armatus
ENSSLDG00000010476	srp54	100	99.206	ENSMZEG00005027528	srp54	100	99.206	Maylandia_zebra
ENSSLDG00000010476	srp54	100	90.514	ENSMGAG00000012481	SRP54	100	90.514	Meleagris_gallopavo
ENSSLDG00000010476	srp54	100	95.635	ENSMAUG00000014447	-	100	95.635	Mesocricetus_auratus
ENSSLDG00000010476	srp54	100	95.437	ENSMICG00000010270	SRP54	100	95.437	Microcebus_murinus
ENSSLDG00000010476	srp54	87	95.227	ENSMOCG00000000948	-	100	95.227	Microtus_ochrogaster
ENSSLDG00000010476	srp54	90	96.696	ENSMMOG00000020303	srp54	99	96.696	Mola_mola
ENSSLDG00000010476	srp54	100	95.437	ENSMODG00000012925	-	100	95.437	Monodelphis_domestica
ENSSLDG00000010476	srp54	100	95.437	ENSMODG00000023150	-	100	95.437	Monodelphis_domestica
ENSSLDG00000010476	srp54	89	97.768	ENSMALG00000009163	srp54	99	97.768	Monopterus_albus
ENSSLDG00000010476	srp54	100	95.635	MGP_CAROLIEiJ_G0017754	-	100	95.635	Mus_caroli
ENSSLDG00000010476	srp54	100	94.841	ENSMUSG00000079108	Srp54c	100	94.841	Mus_musculus
ENSSLDG00000010476	srp54	100	95.635	ENSMUSG00000073079	Srp54a	100	97.273	Mus_musculus
ENSSLDG00000010476	srp54	100	95.635	ENSMUSG00000112449	Srp54b	100	95.635	Mus_musculus
ENSSLDG00000010476	srp54	100	95.635	MGP_PahariEiJ_G0029510	-	100	95.635	Mus_pahari
ENSSLDG00000010476	srp54	100	95.437	ENSMPUG00000016302	SRP54	100	95.437	Mustela_putorius_furo
ENSSLDG00000010476	srp54	100	94.841	ENSMLUG00000008958	SRP54	100	94.841	Myotis_lucifugus
ENSSLDG00000010476	srp54	100	86.508	ENSNGAG00000019806	-	100	86.508	Nannospalax_galili
ENSSLDG00000010476	srp54	87	99.091	ENSNBRG00000006000	srp54	100	99.091	Neolamprologus_brichardi
ENSSLDG00000010476	srp54	100	95.437	ENSNLEG00000003496	SRP54	100	95.437	Nomascus_leucogenys
ENSSLDG00000010476	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSSLDG00000010476	srp54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSSLDG00000010476	srp54	100	95.437	ENSODEG00000004865	SRP54	100	95.437	Octodon_degus
ENSSLDG00000010476	srp54	100	99.206	ENSONIG00000011768	srp54	100	99.206	Oreochromis_niloticus
ENSSLDG00000010476	srp54	100	95.437	ENSOANG00000014051	SRP54	100	95.437	Ornithorhynchus_anatinus
ENSSLDG00000010476	srp54	100	94.841	ENSOCUG00000007838	SRP54	100	94.841	Oryctolagus_cuniculus
ENSSLDG00000010476	srp54	100	99.008	ENSORLG00000010027	srp54	100	99.008	Oryzias_latipes
ENSSLDG00000010476	srp54	100	99.008	ENSORLG00020001878	srp54	100	99.008	Oryzias_latipes_hni
ENSSLDG00000010476	srp54	100	99.008	ENSORLG00015021866	srp54	100	99.008	Oryzias_latipes_hsok
ENSSLDG00000010476	srp54	100	99.206	ENSOMEG00000020952	srp54	100	99.206	Oryzias_melastigma
ENSSLDG00000010476	srp54	100	95.437	ENSOGAG00000012188	SRP54	100	95.437	Otolemur_garnettii
ENSSLDG00000010476	srp54	100	95.437	ENSOARG00000007160	SRP54	100	95.437	Ovis_aries
ENSSLDG00000010476	srp54	100	95.437	ENSPPAG00000017434	SRP54	100	95.437	Pan_paniscus
ENSSLDG00000010476	srp54	100	94.841	ENSPPRG00000014047	SRP54	100	94.841	Panthera_pardus
ENSSLDG00000010476	srp54	100	95.635	ENSPTIG00000000744	SRP54	96	95.635	Panthera_tigris_altaica
ENSSLDG00000010476	srp54	100	95.437	ENSPTRG00000006259	FAM177A1	100	95.437	Pan_troglodytes
ENSSLDG00000010476	srp54	100	95.437	ENSPANG00000023853	SRP54	100	95.437	Papio_anubis
ENSSLDG00000010476	srp54	100	97.421	ENSPKIG00000001953	srp54	100	97.421	Paramormyrops_kingsleyae
ENSSLDG00000010476	srp54	100	95.238	ENSPSIG00000006476	SRP54	100	95.238	Pelodiscus_sinensis
ENSSLDG00000010476	srp54	91	95.870	ENSPMGG00000004127	srp54	99	95.870	Periophthalmus_magnuspinnatus
ENSSLDG00000010476	srp54	100	83.730	ENSPEMG00000019634	-	100	83.730	Peromyscus_maniculatus_bairdii
ENSSLDG00000010476	srp54	100	90.278	ENSPMAG00000006078	-	100	90.278	Petromyzon_marinus
ENSSLDG00000010476	srp54	100	95.437	ENSPCIG00000016175	SRP54	100	95.437	Phascolarctos_cinereus
ENSSLDG00000010476	srp54	100	99.405	ENSPFOG00000008870	srp54	100	99.405	Poecilia_formosa
ENSSLDG00000010476	srp54	100	99.405	ENSPLAG00000009889	srp54	100	99.405	Poecilia_latipinna
ENSSLDG00000010476	srp54	100	99.405	ENSPMEG00000008601	srp54	100	99.405	Poecilia_mexicana
ENSSLDG00000010476	srp54	100	99.405	ENSPREG00000004505	srp54	100	99.405	Poecilia_reticulata
ENSSLDG00000010476	srp54	100	90.476	ENSPPYG00000005739	SRP54	100	90.476	Pongo_abelii
ENSSLDG00000010476	srp54	100	92.063	ENSPCAG00000006268	SRP54	100	92.063	Procavia_capensis
ENSSLDG00000010476	srp54	100	93.465	ENSPCOG00000022473	SRP54	100	93.465	Propithecus_coquereli
ENSSLDG00000010476	srp54	63	97.872	ENSPVAG00000010056	SRP54	82	97.872	Pteropus_vampyrus
ENSSLDG00000010476	srp54	100	99.206	ENSPNYG00000009717	srp54	100	99.206	Pundamilia_nyererei
ENSSLDG00000010476	srp54	100	97.421	ENSPNAG00000008544	srp54	100	97.421	Pygocentrus_nattereri
ENSSLDG00000010476	srp54	100	95.437	ENSRNOG00000032776	Srp54a	100	95.437	Rattus_norvegicus
ENSSLDG00000010476	srp54	100	95.437	ENSRROG00000041292	SRP54	100	95.437	Rhinopithecus_roxellana
ENSSLDG00000010476	srp54	86	51.701	YPR088C	SRP54	95	47.318	Saccharomyces_cerevisiae
ENSSLDG00000010476	srp54	94	95.148	ENSSBOG00000035145	SRP54	100	95.148	Saimiri_boliviensis_boliviensis
ENSSLDG00000010476	srp54	68	94.169	ENSSHAG00000000671	SRP54	100	94.169	Sarcophilus_harrisii
ENSSLDG00000010476	srp54	100	97.817	ENSSFOG00015013920	srp54	100	97.817	Scleropages_formosus
ENSSLDG00000010476	srp54	100	93.446	ENSSMAG00000002441	srp54	100	93.446	Scophthalmus_maximus
ENSSLDG00000010476	srp54	100	99.802	ENSSDUG00000018586	srp54	100	99.802	Seriola_dumerili
ENSSLDG00000010476	srp54	100	95.437	ENSSARG00000002744	SRP54	100	95.437	Sorex_araneus
ENSSLDG00000010476	srp54	100	95.437	ENSSPUG00000013101	SRP54	100	95.437	Sphenodon_punctatus
ENSSLDG00000010476	srp54	100	99.603	ENSSPAG00000002354	srp54	100	99.603	Stegastes_partitus
ENSSLDG00000010476	srp54	100	95.437	ENSSSCG00000001955	SRP54	100	95.437	Sus_scrofa
ENSSLDG00000010476	srp54	94	94.726	ENSTGUG00000011945	-	95	94.726	Taeniopygia_guttata
ENSSLDG00000010476	srp54	100	98.810	ENSTRUG00000007057	srp54	100	98.810	Takifugu_rubripes
ENSSLDG00000010476	srp54	100	98.016	ENSTNIG00000002589	srp54	100	98.016	Tetraodon_nigroviridis
ENSSLDG00000010476	srp54	89	86.801	ENSTBEG00000011409	SRP54	100	86.801	Tupaia_belangeri
ENSSLDG00000010476	srp54	100	86.508	ENSTTRG00000000928	SRP54	100	86.508	Tursiops_truncatus
ENSSLDG00000010476	srp54	52	96.183	ENSUAMG00000012385	SRP54	100	96.183	Ursus_americanus
ENSSLDG00000010476	srp54	100	95.437	ENSUMAG00000011234	SRP54	100	95.437	Ursus_maritimus
ENSSLDG00000010476	srp54	94	94.937	ENSVPAG00000005668	SRP54	100	94.937	Vicugna_pacos
ENSSLDG00000010476	srp54	100	95.437	ENSVVUG00000019962	SRP54	100	95.437	Vulpes_vulpes
ENSSLDG00000010476	srp54	100	80.868	ENSXETG00000012290	srp54	100	80.868	Xenopus_tropicalis
ENSSLDG00000010476	srp54	88	99.323	ENSXCOG00000004658	srp54	96	99.323	Xiphophorus_couchianus
ENSSLDG00000010476	srp54	100	99.405	ENSXMAG00000018315	srp54	100	99.405	Xiphophorus_maculatus