EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000010884 (Gene tree)
Gene ID: -
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 12334 bases
Position: chrPEQF01099422.1:1549815-1562148
Accession: 111645041
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000013743	ResIII	PF04851.15	8.8e-27	1	2
ENSSLDP00000013743	ResIII	PF04851.15	8.8e-27	2	2
ENSSLDP00000013743	DEAD	PF00270.29	4.3e-54	1	2
ENSSLDP00000013743	DEAD	PF00270.29	4.3e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000014252	-	6656	XM_023394072	ENSSLDP00000013743	2136 (aa)	XP_023249840	UPI000C6FAA35

Gene Model

Click here to download ENSSLDG00000010884's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000010884's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000010884	snrnp200	86	42.975	ENSSLDG00000021782	ascc3	88	42.916
ENSSLDG00000010884	snrnp200	64	31.462	ENSSLDG00000016386	hfm1	81	31.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000010884	snrnp200	99	90.590	ENSG00000144028	SNRNP200	99	90.700	Homo_sapiens
ENSSLDG00000010884	snrnp200	100	98.970	ENSAPOG00000010223	snrnp200	100	98.970	Acanthochromis_polyacanthus
ENSSLDG00000010884	snrnp200	99	90.637	ENSAMEG00000008996	SNRNP200	99	90.747	Ailuropoda_melanoleuca
ENSSLDG00000010884	snrnp200	97	98.178	ENSACIG00000001764	snrnp200	98	98.178	Amphilophus_citrinellus
ENSSLDG00000010884	snrnp200	100	98.736	ENSAOCG00000024593	snrnp200	100	98.736	Amphiprion_ocellaris
ENSSLDG00000010884	snrnp200	97	98.232	ENSAPEG00000012554	snrnp200	100	98.232	Amphiprion_percula
ENSSLDG00000010884	snrnp200	100	98.876	ENSATEG00000022522	snrnp200	100	98.876	Anabas_testudineus
ENSSLDG00000010884	snrnp200	99	90.759	ENSAPLG00000004313	SNRNP200	99	90.823	Anas_platyrhynchos
ENSSLDG00000010884	snrnp200	99	90.047	ENSACAG00000000434	SNRNP200	100	90.047	Anolis_carolinensis
ENSSLDG00000010884	snrnp200	99	87.809	ENSANAG00000036625	SNRNP200	99	87.910	Aotus_nancymaae
ENSSLDG00000010884	snrnp200	100	97.612	ENSACLG00000011188	snrnp200	100	97.612	Astatotilapia_calliptera
ENSSLDG00000010884	snrnp200	99	95.016	ENSAMXG00000005684	snrnp200	99	95.016	Astyanax_mexicanus
ENSSLDG00000010884	snrnp200	99	90.403	ENSBTAG00000000848	SNRNP200	99	90.512	Bos_taurus
ENSSLDG00000010884	snrnp200	99	90.543	ENSCJAG00000007514	SNRNP200	99	90.653	Callithrix_jacchus
ENSSLDG00000010884	snrnp200	99	89.874	ENSCAFG00020019979	SNRNP200	99	91.623	Canis_lupus_dingo
ENSSLDG00000010884	snrnp200	99	90.356	ENSCHIG00000020611	SNRNP200	99	90.465	Capra_hircus
ENSSLDG00000010884	snrnp200	99	90.590	ENSTSYG00000010467	SNRNP200	99	90.700	Carlito_syrichta
ENSSLDG00000010884	snrnp200	99	90.127	ENSCAPG00000017234	SNRNP200	99	90.236	Cavia_aperea
ENSSLDG00000010884	snrnp200	99	90.449	ENSCPOG00000006776	SNRNP200	99	90.559	Cavia_porcellus
ENSSLDG00000010884	snrnp200	99	90.543	ENSCCAG00000033962	SNRNP200	99	90.653	Cebus_capucinus
ENSSLDG00000010884	snrnp200	99	90.590	ENSCATG00000015790	SNRNP200	99	90.700	Cercocebus_atys
ENSSLDG00000010884	snrnp200	99	90.496	ENSCLAG00000004116	SNRNP200	99	90.606	Chinchilla_lanigera
ENSSLDG00000010884	snrnp200	99	90.590	ENSCSAG00000017369	SNRNP200	99	90.700	Chlorocebus_sabaeus
ENSSLDG00000010884	snrnp200	73	93.701	ENSCHOG00000012981	-	58	93.701	Choloepus_hoffmanni
ENSSLDG00000010884	snrnp200	99	90.510	ENSCPBG00000022571	SNRNP200	99	90.572	Chrysemys_picta_bellii
ENSSLDG00000010884	snrnp200	99	75.828	ENSCING00000005082	-	99	76.066	Ciona_intestinalis
ENSSLDG00000010884	snrnp200	94	90.294	ENSCANG00000033932	SNRNP200	99	90.410	Colobus_angolensis_palliatus
ENSSLDG00000010884	snrnp200	99	90.590	ENSCGRG00001022610	Snrnp200	99	90.700	Cricetulus_griseus_chok1gshd
ENSSLDG00000010884	snrnp200	99	90.089	ENSCGRG00000016472	Snrnp200	99	90.197	Cricetulus_griseus_crigri
ENSSLDG00000010884	snrnp200	99	96.673	ENSCSEG00000016399	snrnp200	100	96.673	Cynoglossus_semilaevis
ENSSLDG00000010884	snrnp200	100	91.948	ENSCVAG00000017631	snrnp200	100	91.948	Cyprinodon_variegatus
ENSSLDG00000010884	snrnp200	100	94.522	ENSDARG00000077536	snrnp200	99	94.546	Danio_rerio
ENSSLDG00000010884	snrnp200	99	89.279	ENSDNOG00000011227	SNRNP200	99	89.385	Dasypus_novemcinctus
ENSSLDG00000010884	snrnp200	99	88.131	ENSDORG00000005861	Snrnp200	99	88.233	Dipodomys_ordii
ENSSLDG00000010884	snrnp200	100	73.790	FBgn0263599	l(3)72Ab	99	74.110	Drosophila_melanogaster
ENSSLDG00000010884	snrnp200	95	90.181	ENSETEG00000000162	SNRNP200	74	90.181	Echinops_telfairi
ENSSLDG00000010884	snrnp200	83	81.076	ENSEBUG00000016524	snrnp200	95	81.076	Eptatretus_burgeri
ENSSLDG00000010884	snrnp200	99	89.604	ENSEASG00005001884	SNRNP200	99	89.616	Equus_asinus_asinus
ENSSLDG00000010884	snrnp200	99	90.637	ENSECAG00000019675	SNRNP200	99	90.747	Equus_caballus
ENSSLDG00000010884	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSSLDG00000010884	snrnp200	100	96.537	ENSELUG00000018948	snrnp200	100	96.537	Esox_lucius
ENSSLDG00000010884	snrnp200	99	90.684	ENSFCAG00000010699	SNRNP200	99	90.794	Felis_catus
ENSSLDG00000010884	snrnp200	93	86.607	ENSFALG00000001368	-	94	86.607	Ficedula_albicollis
ENSSLDG00000010884	snrnp200	99	90.403	ENSFDAG00000004683	SNRNP200	99	90.512	Fukomys_damarensis
ENSSLDG00000010884	snrnp200	100	94.522	ENSFHEG00000003786	snrnp200	100	94.522	Fundulus_heteroclitus
ENSSLDG00000010884	snrnp200	100	95.280	ENSGMOG00000004881	snrnp200	99	95.167	Gadus_morhua
ENSSLDG00000010884	snrnp200	100	94.710	ENSGAFG00000010807	snrnp200	100	94.710	Gambusia_affinis
ENSSLDG00000010884	snrnp200	100	97.711	ENSGACG00000011474	snrnp200	99	97.711	Gasterosteus_aculeatus
ENSSLDG00000010884	snrnp200	95	92.369	ENSGAGG00000016069	SNRNP200	97	98.387	Gopherus_agassizii
ENSSLDG00000010884	snrnp200	99	90.590	ENSGGOG00000005174	SNRNP200	99	90.700	Gorilla_gorilla
ENSSLDG00000010884	snrnp200	97	95.192	ENSHBUG00000011322	snrnp200	99	95.192	Haplochromis_burtoni
ENSSLDG00000010884	snrnp200	99	90.449	ENSHGLG00000006654	SNRNP200	99	90.559	Heterocephalus_glaber_female
ENSSLDG00000010884	snrnp200	99	90.449	ENSHGLG00100018594	SNRNP200	99	90.559	Heterocephalus_glaber_male
ENSSLDG00000010884	snrnp200	99	90.590	ENSSTOG00000016351	SNRNP200	99	90.700	Ictidomys_tridecemlineatus
ENSSLDG00000010884	snrnp200	99	90.449	ENSJJAG00000023659	Snrnp200	99	90.559	Jaculus_jaculus
ENSSLDG00000010884	snrnp200	100	94.774	ENSKMAG00000003665	snrnp200	100	94.774	Kryptolebias_marmoratus
ENSSLDG00000010884	snrnp200	100	98.174	ENSLBEG00000021585	snrnp200	100	98.174	Labrus_bergylta
ENSSLDG00000010884	snrnp200	82	92.206	ENSLACG00000000226	SNRNP200	99	92.339	Latimeria_chalumnae
ENSSLDG00000010884	snrnp200	100	94.294	ENSLOCG00000015198	snrnp200	99	94.317	Lepisosteus_oculatus
ENSSLDG00000010884	snrnp200	99	90.496	ENSLAFG00000015626	SNRNP200	99	90.606	Loxodonta_africana
ENSSLDG00000010884	snrnp200	99	90.543	ENSMFAG00000040174	SNRNP200	99	91.860	Macaca_fascicularis
ENSSLDG00000010884	snrnp200	99	90.543	ENSMMUG00000023261	SNRNP200	99	90.653	Macaca_mulatta
ENSSLDG00000010884	snrnp200	99	90.496	ENSMNEG00000032398	SNRNP200	99	90.606	Macaca_nemestrina
ENSSLDG00000010884	snrnp200	99	90.590	ENSMLEG00000019083	SNRNP200	99	91.860	Mandrillus_leucophaeus
ENSSLDG00000010884	snrnp200	100	97.707	ENSMAMG00000007851	snrnp200	100	97.707	Mastacembelus_armatus
ENSSLDG00000010884	snrnp200	97	95.192	ENSMZEG00005010787	snrnp200	99	95.192	Maylandia_zebra
ENSSLDG00000010884	snrnp200	97	90.373	ENSMGAG00000001831	SNRNP200	99	90.492	Meleagris_gallopavo
ENSSLDG00000010884	snrnp200	99	90.637	ENSMAUG00000011825	Snrnp200	99	90.747	Mesocricetus_auratus
ENSSLDG00000010884	snrnp200	99	90.637	ENSMICG00000004710	SNRNP200	99	90.747	Microcebus_murinus
ENSSLDG00000010884	snrnp200	99	88.764	ENSMOCG00000011814	Snrnp200	99	88.868	Microtus_ochrogaster
ENSSLDG00000010884	snrnp200	100	96.161	ENSMMOG00000014167	snrnp200	100	96.161	Mola_mola
ENSSLDG00000010884	snrnp200	99	90.637	ENSMODG00000008475	SNRNP200	99	90.700	Monodelphis_domestica
ENSSLDG00000010884	snrnp200	100	98.034	ENSMALG00000001973	snrnp200	100	98.034	Monopterus_albus
ENSSLDG00000010884	snrnp200	99	90.496	MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.606	Mus_caroli
ENSSLDG00000010884	snrnp200	99	90.543	ENSMUSG00000003660	Snrnp200	99	90.653	Mus_musculus
ENSSLDG00000010884	snrnp200	99	90.543	MGP_PahariEiJ_G0025695	Snrnp200	99	90.653	Mus_pahari
ENSSLDG00000010884	snrnp200	99	90.543	MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	Mus_spretus
ENSSLDG00000010884	snrnp200	99	90.684	ENSMPUG00000008949	SNRNP200	99	90.794	Mustela_putorius_furo
ENSSLDG00000010884	snrnp200	99	90.229	ENSMLUG00000010493	SNRNP200	99	90.338	Myotis_lucifugus
ENSSLDG00000010884	snrnp200	99	87.360	ENSMLUG00000027511	-	99	87.459	Myotis_lucifugus
ENSSLDG00000010884	snrnp200	99	90.590	ENSNGAG00000021993	Snrnp200	99	90.700	Nannospalax_galili
ENSSLDG00000010884	snrnp200	90	97.795	ENSNBRG00000017960	snrnp200	98	97.795	Neolamprologus_brichardi
ENSSLDG00000010884	snrnp200	99	86.332	ENSNLEG00000000025	SNRNP200	99	86.521	Nomascus_leucogenys
ENSSLDG00000010884	snrnp200	99	92.784	ENSMEUG00000010532	SNRNP200	78	91.837	Notamacropus_eugenii
ENSSLDG00000010884	snrnp200	96	89.446	ENSOPRG00000015464	SNRNP200	99	87.365	Ochotona_princeps
ENSSLDG00000010884	snrnp200	99	90.403	ENSODEG00000008366	SNRNP200	99	90.512	Octodon_degus
ENSSLDG00000010884	snrnp200	100	97.659	ENSONIG00000010714	snrnp200	100	97.659	Oreochromis_niloticus
ENSSLDG00000010884	snrnp200	99	90.543	ENSOCUG00000009864	SNRNP200	99	90.653	Oryctolagus_cuniculus
ENSSLDG00000010884	snrnp200	99	96.345	ENSORLG00000012286	snrnp200	100	96.392	Oryzias_latipes
ENSSLDG00000010884	snrnp200	99	96.439	ENSORLG00020004648	snrnp200	100	96.439	Oryzias_latipes_hni
ENSSLDG00000010884	snrnp200	99	96.485	ENSORLG00015019114	snrnp200	100	96.485	Oryzias_latipes_hsok
ENSSLDG00000010884	snrnp200	100	96.816	ENSOMEG00000011834	snrnp200	100	96.816	Oryzias_melastigma
ENSSLDG00000010884	snrnp200	99	90.590	ENSOGAG00000006879	SNRNP200	99	90.700	Otolemur_garnettii
ENSSLDG00000010884	snrnp200	99	89.658	ENSOARG00000013949	SNRNP200	99	89.765	Ovis_aries
ENSSLDG00000010884	snrnp200	99	90.590	ENSPPAG00000041559	SNRNP200	99	90.700	Pan_paniscus
ENSSLDG00000010884	snrnp200	99	90.684	ENSPPRG00000004435	SNRNP200	99	90.794	Panthera_pardus
ENSSLDG00000010884	snrnp200	99	90.262	ENSPTIG00000006380	SNRNP200	99	90.371	Panthera_tigris_altaica
ENSSLDG00000010884	snrnp200	99	90.590	ENSPTRG00000012230	SNRNP200	99	90.700	Pan_troglodytes
ENSSLDG00000010884	snrnp200	99	90.543	ENSPANG00000006017	SNRNP200	99	90.653	Papio_anubis
ENSSLDG00000010884	snrnp200	100	95.227	ENSPKIG00000014762	snrnp200	99	95.306	Paramormyrops_kingsleyae
ENSSLDG00000010884	snrnp200	99	89.705	ENSPSIG00000008580	SNRNP200	99	89.765	Pelodiscus_sinensis
ENSSLDG00000010884	snrnp200	99	90.543	ENSPCIG00000023050	SNRNP200	99	90.606	Phascolarctos_cinereus
ENSSLDG00000010884	snrnp200	100	97.005	ENSPFOG00000015110	snrnp200	100	97.005	Poecilia_formosa
ENSSLDG00000010884	snrnp200	97	97.470	ENSPLAG00000006711	snrnp200	99	97.470	Poecilia_latipinna
ENSSLDG00000010884	snrnp200	97	97.415	ENSPMEG00000021166	snrnp200	99	97.415	Poecilia_mexicana
ENSSLDG00000010884	snrnp200	100	97.051	ENSPREG00000008875	snrnp200	100	97.051	Poecilia_reticulata
ENSSLDG00000010884	snrnp200	99	90.590	ENSPPYG00000012068	SNRNP200	99	90.700	Pongo_abelii
ENSSLDG00000010884	snrnp200	97	94.872	ENSPCAG00000008536	SNRNP200	85	97.872	Procavia_capensis
ENSSLDG00000010884	snrnp200	99	90.590	ENSPCOG00000024608	SNRNP200	99	90.700	Propithecus_coquereli
ENSSLDG00000010884	snrnp200	96	90.686	ENSPVAG00000005860	SNRNP200	92	90.928	Pteropus_vampyrus
ENSSLDG00000010884	snrnp200	100	92.810	ENSPNYG00000017476	snrnp200	100	92.810	Pundamilia_nyererei
ENSSLDG00000010884	snrnp200	100	90.735	ENSPNAG00000010998	snrnp200	99	90.789	Pygocentrus_nattereri
ENSSLDG00000010884	snrnp200	99	90.637	ENSRNOG00000012157	Snrnp200	99	90.747	Rattus_norvegicus
ENSSLDG00000010884	snrnp200	99	90.590	ENSRBIG00000044690	-	99	90.700	Rhinopithecus_bieti
ENSSLDG00000010884	snrnp200	99	90.590	ENSRROG00000037952	-	99	90.700	Rhinopithecus_roxellana
ENSSLDG00000010884	snrnp200	99	90.543	ENSSBOG00000035471	SNRNP200	99	90.653	Saimiri_boliviensis_boliviensis
ENSSLDG00000010884	snrnp200	97	90.373	ENSSHAG00000000758	SNRNP200	99	90.444	Sarcophilus_harrisii
ENSSLDG00000010884	snrnp200	99	95.536	ENSSFOG00015018826	snrnp200	99	95.536	Scleropages_formosus
ENSSLDG00000010884	snrnp200	100	98.408	ENSSMAG00000005463	snrnp200	100	98.408	Scophthalmus_maximus
ENSSLDG00000010884	snrnp200	100	99.625	ENSSDUG00000021410	snrnp200	100	99.625	Seriola_dumerili
ENSSLDG00000010884	snrnp200	95	88.740	ENSSARG00000010728	SNRNP200	96	88.710	Sorex_araneus
ENSSLDG00000010884	snrnp200	99	90.824	ENSSPUG00000003726	-	99	90.888	Sphenodon_punctatus
ENSSLDG00000010884	snrnp200	100	99.110	ENSSPAG00000001842	snrnp200	100	99.110	Stegastes_partitus
ENSSLDG00000010884	snrnp200	99	90.684	ENSSSCG00000008127	SNRNP200	99	90.794	Sus_scrofa
ENSSLDG00000010884	snrnp200	99	82.454	ENSTGUG00000014475	-	100	82.454	Taeniopygia_guttata
ENSSLDG00000010884	snrnp200	100	97.051	ENSTRUG00000001307	snrnp200	100	97.051	Takifugu_rubripes
ENSSLDG00000010884	snrnp200	99	84.853	ENSTNIG00000004320	snrnp200	100	84.853	Tetraodon_nigroviridis
ENSSLDG00000010884	snrnp200	82	93.427	ENSTBEG00000003329	-	67	93.427	Tupaia_belangeri
ENSSLDG00000010884	snrnp200	99	90.449	ENSTTRG00000004983	SNRNP200	99	90.559	Tursiops_truncatus
ENSSLDG00000010884	snrnp200	75	83.915	ENSUAMG00000008395	-	95	83.624	Ursus_americanus
ENSSLDG00000010884	snrnp200	99	90.684	ENSUMAG00000012385	SNRNP200	99	90.794	Ursus_maritimus
ENSSLDG00000010884	snrnp200	87	93.568	ENSVPAG00000006434	SNRNP200	66	93.568	Vicugna_pacos
ENSSLDG00000010884	snrnp200	99	90.472	ENSVVUG00000026247	SNRNP200	99	90.627	Vulpes_vulpes
ENSSLDG00000010884	snrnp200	99	90.271	ENSXETG00000001243	snrnp200	99	90.333	Xenopus_tropicalis
ENSSLDG00000010884	snrnp200	97	97.588	ENSXMAG00000002058	snrnp200	98	97.588	Xiphophorus_maculatus