EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000011320 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 5392 bases
Position: chrPEQF01098522.1:311208-316599
Accession: 111652600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000014179	RRM_1	PF00076.22	2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000014714	-	4251	XM_023402910	ENSSLDP00000014179	206 (aa)	XP_023258678	-

Gene Model

Click here to download ENSSLDG00000011320's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000011320's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000011320	cirbpa	55	35.088	ENSSLDG00000023255	srsf5b	55	35.870

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000011320	cirbpa	53	94.495	ENSAPOG00000004458	cirbpa	59	94.495	Acanthochromis_polyacanthus
ENSSLDG00000011320	cirbpa	53	92.661	ENSATEG00000014985	cirbpa	60	92.661	Anabas_testudineus
ENSSLDG00000011320	cirbpa	55	97.368	ENSACLG00000002094	-	63	97.368	Astatotilapia_calliptera
ENSSLDG00000011320	cirbpa	50	77.670	ENSCSEG00000014344	cirbpa	50	78.125	Cynoglossus_semilaevis
ENSSLDG00000011320	cirbpa	53	62.385	ENSDARG00000103672	cirbpa	66	56.098	Danio_rerio
ENSSLDG00000011320	cirbpa	50	59.223	ENSGMOG00000007179	cirbpb	56	63.918	Gadus_morhua
ENSSLDG00000011320	cirbpa	55	97.368	ENSHBUG00000022060	cirbpa	63	97.368	Haplochromis_burtoni
ENSSLDG00000011320	cirbpa	54	75.630	ENSKMAG00000005905	cirbpa	55	86.316	Kryptolebias_marmoratus
ENSSLDG00000011320	cirbpa	53	76.364	ENSLBEG00000027731	-	76	76.596	Labrus_bergylta
ENSSLDG00000011320	cirbpa	53	93.578	ENSMAMG00000010168	cirbpa	60	93.578	Mastacembelus_armatus
ENSSLDG00000011320	cirbpa	55	97.368	ENSMZEG00005025577	-	63	97.368	Maylandia_zebra
ENSSLDG00000011320	cirbpa	55	97.368	ENSNBRG00000019658	cirbpa	63	97.368	Neolamprologus_brichardi
ENSSLDG00000011320	cirbpa	54	82.203	ENSORLG00000015433	cirbpa	57	95.604	Oryzias_latipes
ENSSLDG00000011320	cirbpa	54	82.203	ENSORLG00020016909	cirbpa	57	95.604	Oryzias_latipes_hni
ENSSLDG00000011320	cirbpa	54	82.203	ENSORLG00015016636	cirbpa	55	95.789	Oryzias_latipes_hsok
ENSSLDG00000011320	cirbpa	55	97.368	ENSPNYG00000007198	-	62	97.368	Pundamilia_nyererei
ENSSLDG00000011320	cirbpa	54	79.279	ENSTRUG00000010187	cirbpa	66	91.111	Takifugu_rubripes