EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000011418 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 18874 bases
Position: chrPEQF01098809.1:297632-316505
Accession: 111655678
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000014371	EST1	PF10374.9	9.4e-25	1	1
ENSSLDP00000014358	EST1	PF10374.9	1.1e-16	1	1
ENSSLDP00000014358	EST1_DNA_bind	PF10373.9	1.4e-39	1	1
ENSSLDP00000014371	EST1_DNA_bind	PF10373.9	3.4e-39	1	1
ENSSLDP00000014371	PIN_4	PF13638.6	5.2e-07	1	1
ENSSLDP00000014358	PIN_4	PF13638.6	5.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000014920	-	4862	XM_023407159	ENSSLDP00000014371	1126 (aa)	XP_023262927	UPI000C6F566A
ENSSLDT00000014907	-	2988	-	ENSSLDP00000014358	995 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000011418's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000011418's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000011418	smg5	92	77.594	ENSG00000198952	SMG5	99	60.601	Homo_sapiens
ENSSLDG00000011418	smg5	100	94.159	ENSAPOG00000019690	smg5	100	93.628	Acanthochromis_polyacanthus
ENSSLDG00000011418	smg5	98	59.855	ENSAMEG00000014458	SMG5	100	59.042	Ailuropoda_melanoleuca
ENSSLDG00000011418	smg5	100	84.813	ENSACIG00000001353	smg5	99	84.458	Amphilophus_citrinellus
ENSSLDG00000011418	smg5	100	94.849	ENSAOCG00000019483	smg5	100	94.494	Amphiprion_ocellaris
ENSSLDG00000011418	smg5	100	94.760	ENSAPEG00000022949	smg5	100	94.405	Amphiprion_percula
ENSSLDG00000011418	smg5	100	92.199	ENSATEG00000005348	smg5	100	91.667	Anabas_testudineus
ENSSLDG00000011418	smg5	98	63.710	ENSAPLG00000010263	SMG5	100	62.186	Anas_platyrhynchos
ENSSLDG00000011418	smg5	92	77.594	ENSANAG00000032899	SMG5	97	60.627	Aotus_nancymaae
ENSSLDG00000011418	smg5	100	90.805	ENSACLG00000009311	smg5	100	90.265	Astatotilapia_calliptera
ENSSLDG00000011418	smg5	100	79.396	ENSAMXG00000024616	smg5	100	79.008	Astyanax_mexicanus
ENSSLDG00000011418	smg5	91	49.512	ENSBTAG00000021747	-	85	49.515	Bos_taurus
ENSSLDG00000011418	smg5	96	61.806	ENSBTAG00000009435	SMG5	99	61.559	Bos_taurus
ENSSLDG00000011418	smg5	92	77.594	ENSCJAG00000005684	SMG5	97	60.627	Callithrix_jacchus
ENSSLDG00000011418	smg5	92	76.485	ENSCAFG00000016839	SMG5	99	59.840	Canis_familiaris
ENSSLDG00000011418	smg5	92	76.485	ENSCAFG00020006061	SMG5	99	59.840	Canis_lupus_dingo
ENSSLDG00000011418	smg5	93	77.934	ENSCHIG00000007709	SMG5	99	61.293	Capra_hircus
ENSSLDG00000011418	smg5	85	49.751	ENSCHIG00000006323	-	93	50.000	Capra_hircus
ENSSLDG00000011418	smg5	99	62.078	ENSTSYG00000004099	SMG5	99	60.585	Carlito_syrichta
ENSSLDG00000011418	smg5	88	52.589	ENSCAPG00000003631	SMG5	76	81.319	Cavia_aperea
ENSSLDG00000011418	smg5	96	61.919	ENSCPOG00000015696	SMG5	99	60.407	Cavia_porcellus
ENSSLDG00000011418	smg5	92	77.594	ENSCCAG00000027409	SMG5	97	60.273	Cebus_capucinus
ENSSLDG00000011418	smg5	92	77.830	ENSCATG00000030539	SMG5	99	60.386	Cercocebus_atys
ENSSLDG00000011418	smg5	97	61.364	ENSCLAG00000003983	SMG5	99	60.568	Chinchilla_lanigera
ENSSLDG00000011418	smg5	92	77.830	ENSCSAG00000002120	SMG5	99	60.386	Chlorocebus_sabaeus
ENSSLDG00000011418	smg5	51	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSSLDG00000011418	smg5	94	62.384	ENSCPBG00000025848	SMG5	100	61.581	Chrysemys_picta_bellii
ENSSLDG00000011418	smg5	87	31.285	ENSCING00000008706	-	84	38.308	Ciona_intestinalis
ENSSLDG00000011418	smg5	93	77.804	ENSCANG00000029208	SMG5	99	57.844	Colobus_angolensis_palliatus
ENSSLDG00000011418	smg5	99	61.710	ENSCGRG00001006336	Smg5	99	60.124	Cricetulus_griseus_chok1gshd
ENSSLDG00000011418	smg5	98	61.538	ENSCGRG00000005111	Smg5	100	59.892	Cricetulus_griseus_crigri
ENSSLDG00000011418	smg5	100	88.011	ENSCSEG00000014220	smg5	100	87.567	Cynoglossus_semilaevis
ENSSLDG00000011418	smg5	100	72.913	ENSCVAG00000000529	smg5	99	73.268	Cyprinodon_variegatus
ENSSLDG00000011418	smg5	100	78.338	ENSDARG00000041481	smg5	100	78.180	Danio_rerio
ENSSLDG00000011418	smg5	92	71.462	ENSDNOG00000000051	SMG5	99	58.275	Dasypus_novemcinctus
ENSSLDG00000011418	smg5	92	31.061	ENSDNOG00000039862	-	85	38.736	Dasypus_novemcinctus
ENSSLDG00000011418	smg5	99	61.723	ENSDORG00000010382	Smg5	99	59.912	Dipodomys_ordii
ENSSLDG00000011418	smg5	75	85.437	ENSETEG00000010336	SMG5	81	85.437	Echinops_telfairi
ENSSLDG00000011418	smg5	91	42.241	ENSEBUG00000003739	smg5	88	54.054	Eptatretus_burgeri
ENSSLDG00000011418	smg5	96	61.310	ENSEASG00005019122	SMG5	99	60.796	Equus_asinus_asinus
ENSSLDG00000011418	smg5	93	78.169	ENSECAG00000001389	SMG5	99	60.265	Equus_caballus
ENSSLDG00000011418	smg5	65	78.249	ENSEEUG00000012690	SMG5	75	77.401	Erinaceus_europaeus
ENSSLDG00000011418	smg5	100	82.509	ENSELUG00000012585	smg5	100	80.936	Esox_lucius
ENSSLDG00000011418	smg5	99	60.730	ENSFCAG00000011783	SMG5	99	60.018	Felis_catus
ENSSLDG00000011418	smg5	59	63.487	ENSFALG00000001166	-	96	60.503	Ficedula_albicollis
ENSSLDG00000011418	smg5	98	61.685	ENSFDAG00000017388	SMG5	100	61.066	Fukomys_damarensis
ENSSLDG00000011418	smg5	98	78.700	ENSFHEG00000013939	smg5	94	92.063	Fundulus_heteroclitus
ENSSLDG00000011418	smg5	100	78.478	ENSGMOG00000007310	smg5	100	77.817	Gadus_morhua
ENSSLDG00000011418	smg5	99	64.007	ENSGALG00000029918	-	99	62.236	Gallus_gallus
ENSSLDG00000011418	smg5	92	91.693	ENSGAFG00000021691	smg5	99	92.857	Gambusia_affinis
ENSSLDG00000011418	smg5	100	87.908	ENSGACG00000013142	smg5	100	86.849	Gasterosteus_aculeatus
ENSSLDG00000011418	smg5	99	64.053	ENSGAGG00000016131	SMG5	99	62.467	Gopherus_agassizii
ENSSLDG00000011418	smg5	92	77.594	ENSGGOG00000010932	SMG5	97	60.529	Gorilla_gorilla
ENSSLDG00000011418	smg5	100	90.619	ENSHBUG00000008654	smg5	100	90.611	Haplochromis_burtoni
ENSSLDG00000011418	smg5	99	61.279	ENSHGLG00000019152	SMG5	99	59.139	Heterocephalus_glaber_female
ENSSLDG00000011418	smg5	91	61.779	ENSHGLG00100015948	SMG5	99	60.191	Heterocephalus_glaber_male
ENSSLDG00000011418	smg5	95	66.195	ENSHCOG00000010229	smg5	93	84.578	Hippocampus_comes
ENSSLDG00000011418	smg5	100	78.299	ENSIPUG00000006624	Smg5	100	77.699	Ictalurus_punctatus
ENSSLDG00000011418	smg5	99	61.934	ENSSTOG00000001780	SMG5	92	76.690	Ictidomys_tridecemlineatus
ENSSLDG00000011418	smg5	99	61.545	ENSJJAG00000022763	Smg5	99	61.518	Jaculus_jaculus
ENSSLDG00000011418	smg5	100	91.038	ENSKMAG00000014586	smg5	100	90.861	Kryptolebias_marmoratus
ENSSLDG00000011418	smg5	100	91.563	ENSLBEG00000002145	smg5	100	92.096	Labrus_bergylta
ENSSLDG00000011418	smg5	99	57.306	ENSLACG00000010521	SMG5	99	56.664	Latimeria_chalumnae
ENSSLDG00000011418	smg5	100	69.319	ENSLOCG00000008380	smg5	99	71.473	Lepisosteus_oculatus
ENSSLDG00000011418	smg5	97	60.732	ENSLAFG00000006241	SMG5	99	60.444	Loxodonta_africana
ENSSLDG00000011418	smg5	92	77.830	ENSMFAG00000045357	SMG5	99	60.386	Macaca_fascicularis
ENSSLDG00000011418	smg5	92	77.830	ENSMMUG00000000090	SMG5	99	60.866	Macaca_mulatta
ENSSLDG00000011418	smg5	92	77.830	ENSMNEG00000044425	SMG5	99	60.298	Macaca_nemestrina
ENSSLDG00000011418	smg5	92	67.925	ENSMLEG00000041192	SMG5	97	60.498	Mandrillus_leucophaeus
ENSSLDG00000011418	smg5	100	92.362	ENSMAMG00000010683	smg5	100	92.274	Mastacembelus_armatus
ENSSLDG00000011418	smg5	100	80.654	ENSMZEG00005015815	smg5	99	80.813	Maylandia_zebra
ENSSLDG00000011418	smg5	66	77.285	ENSMZEG00005016543	smg5	100	81.069	Maylandia_zebra
ENSSLDG00000011418	smg5	92	77.069	ENSMAUG00000010381	Smg5	99	60.601	Mesocricetus_auratus
ENSSLDG00000011418	smg5	96	61.294	ENSMICG00000002257	SMG5	97	60.335	Microcebus_murinus
ENSSLDG00000011418	smg5	99	60.943	ENSMOCG00000016590	Smg5	99	60.176	Microtus_ochrogaster
ENSSLDG00000011418	smg5	100	86.295	ENSMMOG00000017199	smg5	100	86.637	Mola_mola
ENSSLDG00000011418	smg5	68	35.142	ENSMODG00000004511	-	80	34.204	Monodelphis_domestica
ENSSLDG00000011418	smg5	74	34.234	ENSMODG00000004532	-	90	34.234	Monodelphis_domestica
ENSSLDG00000011418	smg5	71	33.590	ENSMODG00000010675	-	90	33.846	Monodelphis_domestica
ENSSLDG00000011418	smg5	81	77.465	ENSMODG00000016901	SMG5	98	59.113	Monodelphis_domestica
ENSSLDG00000011418	smg5	69	34.771	ENSMODG00000004735	-	86	34.771	Monodelphis_domestica
ENSSLDG00000011418	smg5	100	91.127	ENSMALG00000010375	smg5	100	89.973	Monopterus_albus
ENSSLDG00000011418	smg5	99	61.956	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSSLDG00000011418	smg5	99	61.977	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSSLDG00000011418	smg5	99	62.066	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSSLDG00000011418	smg5	99	61.799	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSSLDG00000011418	smg5	93	63.685	ENSMPUG00000004546	SMG5	97	62.751	Mustela_putorius_furo
ENSSLDG00000011418	smg5	92	78.066	ENSMLUG00000008518	SMG5	99	60.746	Myotis_lucifugus
ENSSLDG00000011418	smg5	99	61.901	ENSNGAG00000020706	Smg5	99	60.533	Nannospalax_galili
ENSSLDG00000011418	smg5	78	49.015	ENSNGAG00000012101	-	86	48.780	Nannospalax_galili
ENSSLDG00000011418	smg5	96	79.314	ENSNBRG00000004332	smg5	98	79.415	Neolamprologus_brichardi
ENSSLDG00000011418	smg5	92	77.830	ENSNLEG00000012439	SMG5	97	61.440	Nomascus_leucogenys
ENSSLDG00000011418	smg5	93	77.700	ENSMEUG00000012834	SMG5	99	59.419	Notamacropus_eugenii
ENSSLDG00000011418	smg5	99	62.167	ENSOPRG00000009152	SMG5	99	61.559	Ochotona_princeps
ENSSLDG00000011418	smg5	99	61.302	ENSODEG00000012237	SMG5	99	61.293	Octodon_degus
ENSSLDG00000011418	smg5	100	90.345	ENSONIG00000008632	smg5	100	90.788	Oreochromis_niloticus
ENSSLDG00000011418	smg5	78	44.048	ENSOCUG00000023338	-	88	43.333	Oryctolagus_cuniculus
ENSSLDG00000011418	smg5	91	78.660	ENSOCUG00000012886	SMG5	100	61.267	Oryctolagus_cuniculus
ENSSLDG00000011418	smg5	100	85.714	ENSORLG00000016239	smg5	100	86.158	Oryzias_latipes
ENSSLDG00000011418	smg5	100	86.259	ENSORLG00020013127	smg5	100	86.247	Oryzias_latipes_hni
ENSSLDG00000011418	smg5	100	85.980	ENSORLG00015019014	smg5	100	86.424	Oryzias_latipes_hsok
ENSSLDG00000011418	smg5	84	85.624	ENSOMEG00000021330	smg5	93	85.539	Oryzias_melastigma
ENSSLDG00000011418	smg5	96	60.597	ENSOGAG00000004966	SMG5	99	59.947	Otolemur_garnettii
ENSSLDG00000011418	smg5	93	77.934	ENSOARG00000005778	SMG5	99	61.470	Ovis_aries
ENSSLDG00000011418	smg5	85	50.000	ENSOARG00000011963	-	93	50.243	Ovis_aries
ENSSLDG00000011418	smg5	96	61.683	ENSPPAG00000011996	SMG5	97	60.627	Pan_paniscus
ENSSLDG00000011418	smg5	98	60.217	ENSPPRG00000011901	SMG5	100	59.675	Panthera_pardus
ENSSLDG00000011418	smg5	95	59.625	ENSPTIG00000007892	SMG5	94	59.627	Panthera_tigris_altaica
ENSSLDG00000011418	smg5	86	77.465	ENSPTRG00000049282	-	83	76.620	Pan_troglodytes
ENSSLDG00000011418	smg5	96	61.683	ENSPTRG00000023925	SMG5	97	60.627	Pan_troglodytes
ENSSLDG00000011418	smg5	92	77.830	ENSPANG00000011201	SMG5	99	60.386	Papio_anubis
ENSSLDG00000011418	smg5	100	76.821	ENSPKIG00000009402	smg5	100	76.288	Paramormyrops_kingsleyae
ENSSLDG00000011418	smg5	98	64.350	ENSPSIG00000015198	SMG5	100	62.816	Pelodiscus_sinensis
ENSSLDG00000011418	smg5	100	72.985	ENSPMGG00000010465	smg5	100	72.124	Periophthalmus_magnuspinnatus
ENSSLDG00000011418	smg5	99	61.532	ENSPEMG00000001819	Smg5	99	59.462	Peromyscus_maniculatus_bairdii
ENSSLDG00000011418	smg5	84	61.916	ENSPMAG00000000410	smg5	99	46.101	Petromyzon_marinus
ENSSLDG00000011418	smg5	92	77.804	ENSPCIG00000018938	SMG5	91	76.850	Phascolarctos_cinereus
ENSSLDG00000011418	smg5	100	87.655	ENSPFOG00000010191	smg5	100	87.655	Poecilia_formosa
ENSSLDG00000011418	smg5	100	87.478	ENSPLAG00000009332	smg5	100	87.744	Poecilia_latipinna
ENSSLDG00000011418	smg5	100	87.655	ENSPMEG00000014105	smg5	100	87.389	Poecilia_mexicana
ENSSLDG00000011418	smg5	100	87.833	ENSPREG00000017713	smg5	100	88.366	Poecilia_reticulata
ENSSLDG00000011418	smg5	92	77.594	ENSPPYG00000000723	SMG5	97	60.725	Pongo_abelii
ENSSLDG00000011418	smg5	73	80.556	ENSPCAG00000008412	SMG5	81	80.556	Procavia_capensis
ENSSLDG00000011418	smg5	92	78.385	ENSPCOG00000004741	SMG5	99	60.924	Propithecus_coquereli
ENSSLDG00000011418	smg5	93	64.802	ENSPVAG00000016748	SMG5	99	54.037	Pteropus_vampyrus
ENSSLDG00000011418	smg5	100	90.212	ENSPNYG00000013397	smg5	100	90.026	Pundamilia_nyererei
ENSSLDG00000011418	smg5	100	79.362	ENSPNAG00000028363	smg5	100	78.975	Pygocentrus_nattereri
ENSSLDG00000011418	smg5	99	61.833	ENSRNOG00000019590	Smg5	99	60.000	Rattus_norvegicus
ENSSLDG00000011418	smg5	92	78.066	ENSRBIG00000027428	SMG5	99	60.386	Rhinopithecus_bieti
ENSSLDG00000011418	smg5	92	78.066	ENSRROG00000030035	SMG5	99	60.298	Rhinopithecus_roxellana
ENSSLDG00000011418	smg5	92	77.830	ENSSBOG00000033339	SMG5	97	60.370	Saimiri_boliviensis_boliviensis
ENSSLDG00000011418	smg5	95	62.062	ENSSHAG00000014163	SMG5	95	61.003	Sarcophilus_harrisii
ENSSLDG00000011418	smg5	70	40.587	ENSSHAG00000009572	-	79	40.587	Sarcophilus_harrisii
ENSSLDG00000011418	smg5	75	33.780	ENSSHAG00000000561	-	88	36.573	Sarcophilus_harrisii
ENSSLDG00000011418	smg5	50	36.829	ENSSHAG00000000935	-	81	36.829	Sarcophilus_harrisii
ENSSLDG00000011418	smg5	100	77.208	ENSSFOG00015024175	smg5	100	76.439	Scleropages_formosus
ENSSLDG00000011418	smg5	100	94.227	ENSSMAG00000013059	smg5	100	93.250	Scophthalmus_maximus
ENSSLDG00000011418	smg5	100	99.027	ENSSDUG00000007122	smg5	100	99.027	Seriola_dumerili
ENSSLDG00000011418	smg5	85	69.784	ENSSARG00000012484	SMG5	94	69.784	Sorex_araneus
ENSSLDG00000011418	smg5	94	62.907	ENSSPUG00000002260	SMG5	100	61.034	Sphenodon_punctatus
ENSSLDG00000011418	smg5	100	93.634	ENSSPAG00000014266	smg5	100	93.192	Stegastes_partitus
ENSSLDG00000011418	smg5	93	72.066	ENSSSCG00000006490	-	100	60.694	Sus_scrofa
ENSSLDG00000011418	smg5	91	60.260	ENSSSCG00000039308	-	99	47.476	Sus_scrofa
ENSSLDG00000011418	smg5	99	64.050	ENSTGUG00000003748	-	99	61.905	Taeniopygia_guttata
ENSSLDG00000011418	smg5	100	82.244	ENSTRUG00000012580	smg5	100	81.890	Takifugu_rubripes
ENSSLDG00000011418	smg5	100	81.530	ENSTNIG00000010303	smg5	100	81.618	Tetraodon_nigroviridis
ENSSLDG00000011418	smg5	55	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSSLDG00000011418	smg5	99	58.437	ENSTTRG00000001401	SMG5	99	57.839	Tursiops_truncatus
ENSSLDG00000011418	smg5	92	76.429	ENSUAMG00000013721	SMG5	99	59.394	Ursus_americanus
ENSSLDG00000011418	smg5	95	72.922	ENSUMAG00000018041	SMG5	94	73.397	Ursus_maritimus
ENSSLDG00000011418	smg5	92	72.772	ENSVPAG00000009446	SMG5	92	66.585	Vicugna_pacos
ENSSLDG00000011418	smg5	99	61.264	ENSVVUG00000005887	SMG5	99	59.609	Vulpes_vulpes
ENSSLDG00000011418	smg5	77	59.849	ENSXETG00000033791	SMG5	97	58.281	Xenopus_tropicalis
ENSSLDG00000011418	smg5	92	92.432	ENSXCOG00000004379	smg5	100	92.432	Xiphophorus_couchianus
ENSSLDG00000011418	smg5	100	87.034	ENSXMAG00000013499	smg5	100	87.655	Xiphophorus_maculatus