EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000012036 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 9055 bases
Position: chrPEQF01099443.1:97553-106607
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	1	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	2	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	3	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	4	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	5	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	6	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	7	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	8	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	9	10
ENSSLDP00000015188	zf-C2H2	PF00096.26	4.9e-51	10	10
ENSSLDP00000015150	zf-C2H2	PF00096.26	2.7e-23	1	3
ENSSLDP00000015150	zf-C2H2	PF00096.26	2.7e-23	2	3
ENSSLDP00000015150	zf-C2H2	PF00096.26	2.7e-23	3	3
ENSSLDP00000015188	zf-met	PF12874.7	6.1e-13	1	1
ENSSLDP00000015150	zf-met	PF12874.7	3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000015763	-	1119	-	ENSSLDP00000015188	372 (aa)	-	-
ENSSLDT00000015725	-	486	-	ENSSLDP00000015150	161 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000012036's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000012036's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000012036	-	95	46.061	ENSSLDG00000005999	-	57	42.162
ENSSLDG00000012036	-	93	43.519	ENSSLDG00000025265	znf526	63	40.278
ENSSLDG00000012036	-	93	58.228	ENSSLDG00000015049	-	98	58.228
ENSSLDG00000012036	-	96	60.800	ENSSLDG00000008645	-	97	54.882
ENSSLDG00000012036	-	96	47.154	ENSSLDG00000000376	-	72	47.154
ENSSLDG00000012036	-	99	57.143	ENSSLDG00000007756	-	87	59.868
ENSSLDG00000012036	-	95	47.020	ENSSLDG00000021127	-	51	42.537
ENSSLDG00000012036	-	94	54.464	ENSSLDG00000010190	-	76	54.688
ENSSLDG00000012036	-	96	57.895	ENSSLDG00000016317	-	85	57.895
ENSSLDG00000012036	-	91	59.055	ENSSLDG00000020655	-	71	53.299
ENSSLDG00000012036	-	98	46.479	ENSSLDG00000009061	-	92	46.479
ENSSLDG00000012036	-	95	59.223	ENSSLDG00000017937	-	96	56.688
ENSSLDG00000012036	-	95	37.113	ENSSLDG00000018521	znf646	83	37.113
ENSSLDG00000012036	-	93	42.188	ENSSLDG00000004005	-	82	39.535
ENSSLDG00000012036	-	99	45.324	ENSSLDG00000002776	-	67	45.324
ENSSLDG00000012036	-	96	48.485	ENSSLDG00000009821	-	88	45.420
ENSSLDG00000012036	-	95	46.457	ENSSLDG00000013353	prdm5	69	46.457
ENSSLDG00000012036	-	96	47.000	ENSSLDG00000020727	-	99	43.925
ENSSLDG00000012036	-	91	41.270	ENSSLDG00000017166	scrt1b	51	41.270
ENSSLDG00000012036	-	97	46.277	ENSSLDG00000001860	-	94	44.388
ENSSLDG00000012036	-	96	49.524	ENSSLDG00000020990	-	59	49.524
ENSSLDG00000012036	-	94	37.013	ENSSLDG00000014166	znf319b	82	36.152
ENSSLDG00000012036	-	96	48.837	ENSSLDG00000000352	-	64	48.837
ENSSLDG00000012036	-	98	65.753	ENSSLDG00000012133	-	86	61.140
ENSSLDG00000012036	-	95	56.250	ENSSLDG00000004756	-	89	56.250
ENSSLDG00000012036	-	96	48.485	ENSSLDG00000006994	-	96	42.205
ENSSLDG00000012036	-	98	54.967	ENSSLDG00000012320	-	97	54.222
ENSSLDG00000012036	-	94	43.548	ENSSLDG00000005670	-	90	43.548
ENSSLDG00000012036	-	96	58.407	ENSSLDG00000005850	-	91	56.579
ENSSLDG00000012036	-	99	57.391	ENSSLDG00000013760	-	99	47.788
ENSSLDG00000012036	-	96	45.062	ENSSLDG00000000457	-	76	40.602
ENSSLDG00000012036	-	96	46.377	ENSSLDG00000012821	znf236	77	38.889
ENSSLDG00000012036	-	96	39.286	ENSSLDG00000024295	ZNF319	82	40.945
ENSSLDG00000012036	-	93	45.865	ENSSLDG00000000859	-	92	40.673
ENSSLDG00000012036	-	93	43.636	ENSSLDG00000011849	-	65	35.878
ENSSLDG00000012036	-	93	51.974	ENSSLDG00000018273	-	89	52.356
ENSSLDG00000012036	-	91	56.311	ENSSLDG00000005868	-	84	56.311
ENSSLDG00000012036	-	93	98.675	ENSSLDG00000004098	-	95	98.675
ENSSLDG00000012036	-	99	46.250	ENSSLDG00000007524	-	73	45.228
ENSSLDG00000012036	-	98	45.669	ENSSLDG00000021278	-	59	45.669
ENSSLDG00000012036	-	96	47.692	ENSSLDG00000023661	-	84	47.692
ENSSLDG00000012036	-	95	49.351	ENSSLDG00000025676	-	51	50.467
ENSSLDG00000012036	-	100	49.635	ENSSLDG00000020432	-	85	49.635
ENSSLDG00000012036	-	95	37.589	ENSSLDG00000017718	zbtb48	58	37.838
ENSSLDG00000012036	-	91	33.333	ENSSLDG00000015796	-	76	33.333
ENSSLDG00000012036	-	93	38.636	ENSSLDG00000003269	znf710b	50	37.795
ENSSLDG00000012036	-	100	47.863	ENSSLDG00000006724	-	99	47.863
ENSSLDG00000012036	-	96	42.424	ENSSLDG00000017614	-	95	46.753
ENSSLDG00000012036	-	94	45.872	ENSSLDG00000007568	-	77	45.872
ENSSLDG00000012036	-	90	42.697	ENSSLDG00000011412	snai1a	59	42.000
ENSSLDG00000012036	-	91	56.311	ENSSLDG00000006217	-	82	56.311
ENSSLDG00000012036	-	93	47.445	ENSSLDG00000005839	-	67	39.860
ENSSLDG00000012036	-	96	58.553	ENSSLDG00000010390	-	86	56.122
ENSSLDG00000012036	-	91	38.235	ENSSLDG00000000464	-	60	32.278
ENSSLDG00000012036	-	94	46.667	ENSSLDG00000013170	zbtb17	92	42.857
ENSSLDG00000012036	-	96	45.763	ENSSLDG00000014177	zbtb47b	67	45.763
ENSSLDG00000012036	-	96	39.623	ENSSLDG00000023060	-	77	41.290
ENSSLDG00000012036	-	99	41.270	ENSSLDG00000016301	-	95	37.640
ENSSLDG00000012036	-	93	51.145	ENSSLDG00000020455	-	82	51.145
ENSSLDG00000012036	-	93	43.396	ENSSLDG00000006288	-	96	40.312
ENSSLDG00000012036	-	97	45.802	ENSSLDG00000001787	zbtb24	93	46.753
ENSSLDG00000012036	-	94	63.265	ENSSLDG00000018493	-	92	63.265
ENSSLDG00000012036	-	91	49.333	ENSSLDG00000000432	-	93	49.333
ENSSLDG00000012036	-	98	54.450	ENSSLDG00000018598	-	89	54.450
ENSSLDG00000012036	-	91	43.810	ENSSLDG00000012852	snai2	64	40.678
ENSSLDG00000012036	-	91	49.367	ENSSLDG00000015116	-	74	37.559
ENSSLDG00000012036	-	98	58.553	ENSSLDG00000020675	-	96	58.553
ENSSLDG00000012036	-	92	59.259	ENSSLDG00000009582	-	95	59.259
ENSSLDG00000012036	-	95	42.857	ENSSLDG00000002515	-	78	38.372
ENSSLDG00000012036	-	93	48.062	ENSSLDG00000018033	-	54	48.062
ENSSLDG00000012036	-	98	48.148	ENSSLDG00000002756	-	93	40.206
ENSSLDG00000012036	-	92	42.529	ENSSLDG00000025359	-	52	42.529
ENSSLDG00000012036	-	95	45.679	ENSSLDG00000001850	-	56	47.727
ENSSLDG00000012036	-	92	50.000	ENSSLDG00000000202	-	72	50.000
ENSSLDG00000012036	-	93	55.645	ENSSLDG00000000203	-	91	49.398
ENSSLDG00000012036	-	100	41.566	ENSSLDG00000004485	-	67	41.566
ENSSLDG00000012036	-	94	35.252	ENSSLDG00000004428	PRDM15	50	35.252
ENSSLDG00000012036	-	91	40.909	ENSSLDG00000013823	gfi1b	54	38.621
ENSSLDG00000012036	-	98	40.870	ENSSLDG00000014436	-	78	39.474

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000012036	-	99	57.143	ENSAPOG00000006303	-	88	60.345	Acanthochromis_polyacanthus
ENSSLDG00000012036	-	99	53.077	ENSAPOG00000008802	-	99	58.621	Acanthochromis_polyacanthus
ENSSLDG00000012036	-	96	47.059	ENSAPOG00000019960	-	94	47.059	Acanthochromis_polyacanthus
ENSSLDG00000012036	-	96	60.000	ENSACIG00000022658	-	88	60.000	Amphilophus_citrinellus
ENSSLDG00000012036	-	97	55.738	ENSACIG00000004745	-	86	55.738	Amphilophus_citrinellus
ENSSLDG00000012036	-	99	57.500	ENSAOCG00000013130	-	79	57.500	Amphiprion_ocellaris
ENSSLDG00000012036	-	96	57.143	ENSAOCG00000013710	-	84	57.143	Amphiprion_ocellaris
ENSSLDG00000012036	-	99	55.484	ENSAOCG00000014165	-	91	50.338	Amphiprion_ocellaris
ENSSLDG00000012036	-	98	63.504	ENSAPEG00000006650	-	91	63.504	Amphiprion_percula
ENSSLDG00000012036	-	99	57.500	ENSAPEG00000009383	-	81	60.784	Amphiprion_percula
ENSSLDG00000012036	-	96	47.134	ENSATEG00000015695	-	98	47.134	Anabas_testudineus
ENSSLDG00000012036	-	96	47.134	ENSATEG00000017618	-	98	47.134	Anabas_testudineus
ENSSLDG00000012036	-	100	55.263	ENSACLG00000021343	-	95	55.797	Astatotilapia_calliptera
ENSSLDG00000012036	-	99	51.592	ENSACLG00000018746	-	88	52.101	Astatotilapia_calliptera
ENSSLDG00000012036	-	99	44.231	ENSACLG00000019291	-	91	44.231	Astatotilapia_calliptera
ENSSLDG00000012036	-	98	57.037	ENSACLG00000026703	-	70	57.037	Astatotilapia_calliptera
ENSSLDG00000012036	-	96	57.143	ENSACLG00000023513	-	83	55.249	Astatotilapia_calliptera
ENSSLDG00000012036	-	99	42.857	ENSAMXG00000039408	-	92	43.011	Astyanax_mexicanus
ENSSLDG00000012036	-	96	46.541	ENSAMXG00000042275	-	94	44.643	Astyanax_mexicanus
ENSSLDG00000012036	-	94	48.039	ENSAMXG00000043302	-	72	48.039	Astyanax_mexicanus
ENSSLDG00000012036	-	98	48.031	ENSAMXG00000035920	-	93	48.031	Astyanax_mexicanus
ENSSLDG00000012036	-	99	46.190	ENSAMXG00000041975	-	81	48.669	Astyanax_mexicanus
ENSSLDG00000012036	-	98	46.429	ENSBTAG00000016191	ZNF32	78	42.647	Bos_taurus
ENSSLDG00000012036	-	98	46.429	ENSCHIG00000021099	ZNF32	78	42.647	Capra_hircus
ENSSLDG00000012036	-	96	42.038	ENSCSAVG00000001808	-	100	43.220	Ciona_savignyi
ENSSLDG00000012036	-	91	63.793	ENSCVAG00000021225	-	85	63.793	Cyprinodon_variegatus
ENSSLDG00000012036	-	94	43.849	ENSDARG00000099986	si:ch211-207i20.2	59	45.985	Danio_rerio
ENSSLDG00000012036	-	98	46.104	ENSDNOG00000035046	ZNF32	85	42.647	Dasypus_novemcinctus
ENSSLDG00000012036	-	98	45.455	ENSEASG00005006910	ZNF32	84	42.647	Equus_asinus_asinus
ENSSLDG00000012036	-	98	45.455	ENSECAG00000023676	ZNF32	84	42.647	Equus_caballus
ENSSLDG00000012036	-	94	48.819	ENSELUG00000021229	-	94	50.000	Esox_lucius
ENSSLDG00000012036	-	98	49.242	ENSFHEG00000018063	-	95	44.540	Fundulus_heteroclitus
ENSSLDG00000012036	-	98	43.382	ENSFHEG00000000678	-	68	44.796	Fundulus_heteroclitus
ENSSLDG00000012036	-	100	48.936	ENSGAFG00000020499	-	62	50.323	Gambusia_affinis
ENSSLDG00000012036	-	98	44.882	ENSGACG00000010352	si:ch211-207i20.2	61	44.882	Gasterosteus_aculeatus
ENSSLDG00000012036	-	99	51.818	ENSHBUG00000015166	-	86	47.170	Haplochromis_burtoni
ENSSLDG00000012036	-	92	58.824	ENSHBUG00000021003	-	97	58.824	Haplochromis_burtoni
ENSSLDG00000012036	-	96	41.667	ENSHBUG00000013296	-	97	41.667	Haplochromis_burtoni
ENSSLDG00000012036	-	95	46.250	ENSIPUG00000005733	-	69	46.250	Ictalurus_punctatus
ENSSLDG00000012036	-	98	47.771	ENSIPUG00000023761	-	64	45.813	Ictalurus_punctatus
ENSSLDG00000012036	-	96	46.753	ENSIPUG00000022741	-	85	43.366	Ictalurus_punctatus
ENSSLDG00000012036	-	96	50.735	ENSIPUG00000021998	-	90	50.735	Ictalurus_punctatus
ENSSLDG00000012036	-	99	47.761	ENSIPUG00000002655	-	98	47.561	Ictalurus_punctatus
ENSSLDG00000012036	-	92	50.562	ENSLBEG00000020128	-	96	50.562	Labrus_bergylta
ENSSLDG00000012036	-	98	45.455	ENSMMUG00000042578	ZNF32	85	42.647	Macaca_mulatta
ENSSLDG00000012036	-	98	51.163	ENSMAMG00000014734	-	55	47.706	Mastacembelus_armatus
ENSSLDG00000012036	-	99	55.128	ENSMZEG00005007262	-	98	53.988	Maylandia_zebra
ENSSLDG00000012036	-	96	38.514	ENSMZEG00005020156	-	81	38.514	Maylandia_zebra
ENSSLDG00000012036	-	97	56.923	ENSMZEG00005019918	-	93	53.266	Maylandia_zebra
ENSSLDG00000012036	-	99	51.592	ENSMZEG00005003336	-	81	47.977	Maylandia_zebra
ENSSLDG00000012036	-	95	40.146	ENSMZEG00005020162	-	73	40.146	Maylandia_zebra
ENSSLDG00000012036	-	98	50.485	ENSMZEG00005026082	-	71	50.485	Maylandia_zebra
ENSSLDG00000012036	-	99	53.459	ENSMZEG00005021052	-	76	53.459	Maylandia_zebra
ENSSLDG00000012036	-	93	51.852	ENSMZEG00005025343	-	86	48.261	Maylandia_zebra
ENSSLDG00000012036	-	98	40.881	ENSMZEG00005014592	-	92	40.881	Maylandia_zebra
ENSSLDG00000012036	-	94	38.667	ENSMZEG00005012715	-	75	38.667	Maylandia_zebra
ENSSLDG00000012036	-	93	60.494	ENSMMOG00000010703	-	87	60.494	Mola_mola
ENSSLDG00000012036	-	96	48.936	ENSMMOG00000006131	-	87	49.351	Mola_mola
ENSSLDG00000012036	-	100	53.435	ENSMMOG00000004460	-	90	53.435	Mola_mola
ENSSLDG00000012036	-	97	58.678	ENSMALG00000007051	-	96	53.548	Monopterus_albus
ENSSLDG00000012036	-	98	54.140	ENSMALG00000015655	-	96	56.410	Monopterus_albus
ENSSLDG00000012036	-	96	55.118	ENSMALG00000004216	-	66	51.562	Monopterus_albus
ENSSLDG00000012036	-	98	46.104	ENSMUSG00000059689	Zfp637	79	43.137	Mus_musculus
ENSSLDG00000012036	-	98	46.104	MGP_PahariEiJ_G0022533	Zfp637	78	43.137	Mus_pahari
ENSSLDG00000012036	-	98	46.104	MGP_SPRETEiJ_G0029809	Zfp637	79	43.137	Mus_spretus
ENSSLDG00000012036	-	98	45.833	ENSNGAG00000020281	Zfp637	75	45.833	Nannospalax_galili
ENSSLDG00000012036	-	96	55.906	ENSNBRG00000000523	-	75	55.906	Neolamprologus_brichardi
ENSSLDG00000012036	-	98	48.000	ENSNBRG00000003000	-	81	50.000	Neolamprologus_brichardi
ENSSLDG00000012036	-	96	40.252	ENSNBRG00000005805	-	97	40.252	Neolamprologus_brichardi
ENSSLDG00000012036	-	99	41.121	ENSNBRG00000005796	-	96	41.121	Neolamprologus_brichardi
ENSSLDG00000012036	-	99	38.509	ENSNBRG00000016564	-	86	35.294	Neolamprologus_brichardi
ENSSLDG00000012036	-	96	41.176	ENSNBRG00000005849	-	87	41.509	Neolamprologus_brichardi
ENSSLDG00000012036	-	96	40.708	ENSONIG00000015552	-	91	40.708	Oreochromis_niloticus
ENSSLDG00000012036	-	94	43.478	ENSONIG00000015514	-	87	43.478	Oreochromis_niloticus
ENSSLDG00000012036	-	97	42.029	ENSONIG00000005693	-	95	44.340	Oreochromis_niloticus
ENSSLDG00000012036	-	98	46.429	ENSOARG00000002999	ZNF32	78	42.647	Ovis_aries
ENSSLDG00000012036	-	95	48.026	ENSPLAG00000015973	-	99	48.026	Poecilia_latipinna
ENSSLDG00000012036	-	93	57.258	ENSPMEG00000006726	-	89	57.258	Poecilia_mexicana
ENSSLDG00000012036	-	99	53.947	ENSPMEG00000016458	-	95	51.724	Poecilia_mexicana
ENSSLDG00000012036	-	96	50.000	ENSPREG00000010437	-	77	50.000	Poecilia_reticulata
ENSSLDG00000012036	-	96	49.045	ENSPCAG00000005270	-	91	49.045	Procavia_capensis
ENSSLDG00000012036	-	98	50.400	ENSPVAG00000009430	-	79	43.931	Pteropus_vampyrus
ENSSLDG00000012036	-	93	53.595	ENSPNYG00000007597	-	84	53.595	Pundamilia_nyererei
ENSSLDG00000012036	-	96	61.062	ENSPNYG00000002684	-	91	61.062	Pundamilia_nyererei
ENSSLDG00000012036	-	93	47.107	ENSPNAG00000029997	-	82	47.162	Pygocentrus_nattereri
ENSSLDG00000012036	-	98	46.622	ENSSFOG00015015878	-	92	46.622	Scleropages_formosus
ENSSLDG00000012036	-	96	58.599	ENSSDUG00000015182	-	94	53.239	Seriola_dumerili
ENSSLDG00000012036	-	93	54.305	ENSSDUG00000015159	-	89	46.888	Seriola_dumerili
ENSSLDG00000012036	-	96	91.404	ENSSDUG00000015254	-	94	91.404	Seriola_dumerili
ENSSLDG00000012036	-	98	58.462	ENSSDUG00000008943	-	85	58.553	Seriola_dumerili
ENSSLDG00000012036	-	93	49.682	ENSSARG00000000532	-	85	49.682	Sorex_araneus
ENSSLDG00000012036	-	98	45.833	ENSSSCG00000010416	ZNF32	85	42.647	Sus_scrofa
ENSSLDG00000012036	-	97	52.212	ENSXCOG00000008116	-	98	49.618	Xiphophorus_couchianus