EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000012268 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: probable ribonuclease ZC3H12C
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 15626 bases
Position: chrPEQF01099411.1:4000820-4016445
Accession: 111644456
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000015425	RNase_Zc3h12a	PF11977.8	1.5e-65	1	1
ENSSLDP00000015436	RNase_Zc3h12a	PF11977.8	1.5e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000016012	-	6599	XM_023393356	ENSSLDP00000015436	974 (aa)	XP_023249124	UPI000C6F61FB
ENSSLDT00000016001	-	6263	XM_023393357	ENSSLDP00000015425	974 (aa)	XP_023249125	UPI000C6F61FB

Gene Model

Click here to download ENSSLDG00000012268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000012268's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000012268	-	85	48.856	ENSSLDG00000004886	-	99	46.146

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000012268	-	83	49.010	ENSAPOG00000001632	-	78	73.529	Acanthochromis_polyacanthus
ENSSLDG00000012268	-	79	88.342	ENSAPOG00000015355	-	83	87.484	Acanthochromis_polyacanthus
ENSSLDG00000012268	-	100	72.541	ENSACIG00000001362	-	97	73.566	Amphilophus_citrinellus
ENSSLDG00000012268	-	99	88.181	ENSAOCG00000003866	-	98	89.474	Amphiprion_ocellaris
ENSSLDG00000012268	-	100	80.840	ENSAPEG00000005727	-	99	88.603	Amphiprion_percula
ENSSLDG00000012268	-	72	81.935	ENSAPEG00000018582	-	99	88.136	Amphiprion_percula
ENSSLDG00000012268	-	100	88.525	ENSATEG00000004134	-	100	88.934	Anabas_testudineus
ENSSLDG00000012268	-	72	49.738	ENSATEG00000002260	-	83	80.000	Anabas_testudineus
ENSSLDG00000012268	-	100	85.348	ENSACLG00000027924	-	100	85.656	Astatotilapia_calliptera
ENSSLDG00000012268	-	64	54.717	ENSACLG00000018493	-	99	44.773	Astatotilapia_calliptera
ENSSLDG00000012268	-	56	52.915	ENSCPBG00000018492	ZC3H12A	52	66.447	Chrysemys_picta_bellii
ENSSLDG00000012268	-	83	47.288	ENSCSEG00000008542	-	99	43.109	Cynoglossus_semilaevis
ENSSLDG00000012268	-	86	82.632	ENSCSEG00000010073	-	96	87.018	Cynoglossus_semilaevis
ENSSLDG00000012268	-	100	76.513	ENSCVAG00000002328	-	100	76.103	Cyprinodon_variegatus
ENSSLDG00000012268	-	84	56.272	ENSELUG00000009319	-	95	55.288	Esox_lucius
ENSSLDG00000012268	-	51	63.566	ENSELUG00000005470	-	100	48.145	Esox_lucius
ENSSLDG00000012268	-	91	87.234	ENSFHEG00000021225	-	99	87.234	Fundulus_heteroclitus
ENSSLDG00000012268	-	72	47.326	ENSGMOG00000017975	-	100	60.000	Gadus_morhua
ENSSLDG00000012268	-	100	75.770	ENSGAFG00000005290	-	100	75.873	Gambusia_affinis
ENSSLDG00000012268	-	72	73.400	ENSGACG00000014201	-	100	83.333	Gasterosteus_aculeatus
ENSSLDG00000012268	-	72	44.993	ENSGACG00000001339	-	99	59.184	Gasterosteus_aculeatus
ENSSLDG00000012268	-	100	85.143	ENSHBUG00000006831	-	100	85.451	Haplochromis_burtoni
ENSSLDG00000012268	-	100	65.097	ENSHCOG00000008878	-	100	65.614	Hippocampus_comes
ENSSLDG00000012268	-	100	77.175	ENSKMAG00000011694	-	100	78.403	Kryptolebias_marmoratus
ENSSLDG00000012268	-	97	82.947	ENSLBEG00000012554	-	99	87.268	Labrus_bergylta
ENSSLDG00000012268	-	100	83.300	ENSLBEG00000003547	-	100	82.895	Labrus_bergylta
ENSSLDG00000012268	-	99	44.960	ENSMAMG00000020372	-	99	44.521	Mastacembelus_armatus
ENSSLDG00000012268	-	99	82.243	ENSMAMG00000021794	-	98	92.593	Mastacembelus_armatus
ENSSLDG00000012268	-	100	85.246	ENSMZEG00005007718	-	100	85.553	Maylandia_zebra
ENSSLDG00000012268	-	64	54.717	ENSMZEG00005019137	-	90	70.968	Maylandia_zebra
ENSSLDG00000012268	-	96	77.991	ENSMMOG00000005728	-	99	86.203	Mola_mola
ENSSLDG00000012268	-	86	47.460	ENSMMOG00000019526	-	93	43.602	Mola_mola
ENSSLDG00000012268	-	100	85.143	ENSMALG00000010501	-	100	85.041	Monopterus_albus
ENSSLDG00000012268	-	100	84.734	ENSNBRG00000006978	-	100	85.348	Neolamprologus_brichardi
ENSSLDG00000012268	-	64	52.913	ENSNBRG00000012175	-	90	71.613	Neolamprologus_brichardi
ENSSLDG00000012268	-	100	85.553	ENSONIG00000012268	-	99	88.333	Oreochromis_niloticus
ENSSLDG00000012268	-	87	77.400	ENSORLG00000029243	-	97	79.853	Oryzias_latipes
ENSSLDG00000012268	-	100	74.949	ENSORLG00020017005	-	100	75.256	Oryzias_latipes_hni
ENSSLDG00000012268	-	100	74.540	ENSORLG00015015211	-	100	74.745	Oryzias_latipes_hsok
ENSSLDG00000012268	-	100	75.873	ENSOMEG00000006666	-	100	76.049	Oryzias_melastigma
ENSSLDG00000012268	-	66	79.430	ENSPMGG00000009790	-	96	80.984	Periophthalmus_magnuspinnatus
ENSSLDG00000012268	-	50	59.073	ENSPMGG00000020126	-	50	58.947	Periophthalmus_magnuspinnatus
ENSSLDG00000012268	-	100	77.049	ENSPLAG00000009867	-	100	76.639	Poecilia_latipinna
ENSSLDG00000012268	-	86	66.667	ENSPMEG00000011676	-	86	66.667	Poecilia_mexicana
ENSSLDG00000012268	-	100	77.618	ENSPMEG00000006624	-	100	76.947	Poecilia_mexicana
ENSSLDG00000012268	-	100	77.515	ENSPREG00000010838	-	100	77.002	Poecilia_reticulata
ENSSLDG00000012268	-	83	47.236	ENSPREG00000001607	-	73	79.386	Poecilia_reticulata
ENSSLDG00000012268	-	100	88.012	ENSSMAG00000007545	-	100	87.602	Scophthalmus_maximus
ENSSLDG00000012268	-	99	45.062	ENSSMAG00000007258	-	99	45.446	Scophthalmus_maximus
ENSSLDG00000012268	-	100	98.460	ENSSDUG00000021864	-	100	98.460	Seriola_dumerili
ENSSLDG00000012268	-	84	49.369	ENSSDUG00000013237	-	90	64.901	Seriola_dumerili
ENSSLDG00000012268	-	100	90.061	ENSSPAG00000009485	-	100	89.857	Stegastes_partitus
ENSSLDG00000012268	-	99	45.935	ENSSPAG00000001850	-	99	45.648	Stegastes_partitus
ENSSLDG00000012268	-	99	78.395	ENSTRUG00000022519	-	99	79.115	Takifugu_rubripes
ENSSLDG00000012268	-	62	77.521	ENSTNIG00000014519	-	100	81.081	Tetraodon_nigroviridis
ENSSLDG00000012268	-	100	76.694	ENSXMAG00000027171	-	100	76.489	Xiphophorus_maculatus
ENSSLDG00000012268	-	83	47.066	ENSXMAG00000014715	-	83	80.870	Xiphophorus_maculatus