EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000012300 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 3337 bases
Position: chrPEQF01097408.1:78959-82295
Accession: 111650803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000015532	CMS1	PF14617.6	2.4e-32	1	1
ENSSLDP00000015549	CMS1	PF14617.6	3.8e-23	1	1
ENSSLDP00000015532	DEAD	PF00270.29	4.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000016111	-	894	XM_023400721	ENSSLDP00000015532	297 (aa)	XP_023256489	-
ENSSLDT00000016129	-	762	-	ENSSLDP00000015549	241 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000012300's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000012300's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000012300	cmss1	91	52.036	ENSG00000184220	CMSS1	98	65.000	Homo_sapiens
ENSSLDG00000012300	cmss1	68	91.133	ENSAPOG00000010604	cmss1	96	78.148	Acanthochromis_polyacanthus
ENSSLDG00000012300	cmss1	85	55.340	ENSAMEG00000004092	CMSS1	80	63.462	Ailuropoda_melanoleuca
ENSSLDG00000012300	cmss1	92	67.647	ENSACIG00000021854	cmss1	98	67.407	Amphilophus_citrinellus
ENSSLDG00000012300	cmss1	73	88.068	ENSAOCG00000013361	cmss1	94	79.152	Amphiprion_ocellaris
ENSSLDG00000012300	cmss1	71	88.824	ENSAPEG00000005829	cmss1	94	77.817	Amphiprion_percula
ENSSLDG00000012300	cmss1	99	74.061	ENSATEG00000008209	cmss1	100	74.061	Anabas_testudineus
ENSSLDG00000012300	cmss1	73	61.582	ENSAPLG00000010542	CMSS1	90	64.251	Anas_platyrhynchos
ENSSLDG00000012300	cmss1	92	55.157	ENSACAG00000011065	CMSS1	79	62.037	Anolis_carolinensis
ENSSLDG00000012300	cmss1	79	55.208	ENSANAG00000023565	CMSS1	79	62.319	Aotus_nancymaae
ENSSLDG00000012300	cmss1	86	80.861	ENSACLG00000027294	cmss1	90	75.368	Astatotilapia_calliptera
ENSSLDG00000012300	cmss1	67	67.000	ENSAMXG00000002046	cmss1	70	67.633	Astyanax_mexicanus
ENSSLDG00000012300	cmss1	88	55.450	ENSBTAG00000013663	CMSS1	75	63.768	Bos_taurus
ENSSLDG00000012300	cmss1	98	48.945	ENSCJAG00000000610	CMSS1	79	62.319	Callithrix_jacchus
ENSSLDG00000012300	cmss1	88	55.189	ENSCAFG00000009230	CMSS1	75	64.734	Canis_familiaris
ENSSLDG00000012300	cmss1	68	63.366	ENSCAFG00020024156	-	65	62.802	Canis_lupus_dingo
ENSSLDG00000012300	cmss1	88	55.189	ENSCAFG00020009464	-	76	64.734	Canis_lupus_dingo
ENSSLDG00000012300	cmss1	88	54.976	ENSCHIG00000013003	CMSS1	75	63.768	Capra_hircus
ENSSLDG00000012300	cmss1	91	53.394	ENSTSYG00000009266	CMSS1	80	63.768	Carlito_syrichta
ENSSLDG00000012300	cmss1	63	56.989	ENSCAPG00000013584	CMSS1	87	56.989	Cavia_aperea
ENSSLDG00000012300	cmss1	80	58.031	ENSCPOG00000014680	CMSS1	74	65.217	Cavia_porcellus
ENSSLDG00000012300	cmss1	98	49.378	ENSCCAG00000034685	CMSS1	79	63.768	Cebus_capucinus
ENSSLDG00000012300	cmss1	75	59.444	ENSCATG00000031980	CMSS1	79	63.768	Cercocebus_atys
ENSSLDG00000012300	cmss1	72	59.538	ENSCLAG00000011241	CMSS1	89	62.802	Chinchilla_lanigera
ENSSLDG00000012300	cmss1	75	59.444	ENSCSAG00000006024	CMSS1	84	63.768	Chlorocebus_sabaeus
ENSSLDG00000012300	cmss1	72	45.402	ENSCHOG00000012098	CMSS1	75	46.860	Choloepus_hoffmanni
ENSSLDG00000012300	cmss1	65	42.857	ENSCING00000014848	-	99	43.316	Ciona_intestinalis
ENSSLDG00000012300	cmss1	75	59.444	ENSCANG00000031337	CMSS1	79	63.768	Colobus_angolensis_palliatus
ENSSLDG00000012300	cmss1	68	62.871	ENSCGRG00001014305	Cmss1	74	63.107	Cricetulus_griseus_chok1gshd
ENSSLDG00000012300	cmss1	76	59.016	ENSCGRG00000006722	Cmss1	80	63.107	Cricetulus_griseus_crigri
ENSSLDG00000012300	cmss1	85	79.227	ENSCSEG00000004958	cmss1	90	70.849	Cynoglossus_semilaevis
ENSSLDG00000012300	cmss1	88	73.946	ENSCVAG00000005039	cmss1	91	72.694	Cyprinodon_variegatus
ENSSLDG00000012300	cmss1	85	65.566	ENSDARG00000112579	cmss1	71	71.014	Danio_rerio
ENSSLDG00000012300	cmss1	80	57.292	ENSDNOG00000040418	CMSS1	75	64.734	Dasypus_novemcinctus
ENSSLDG00000012300	cmss1	99	50.000	ENSDORG00000010461	Cmss1	74	63.768	Dipodomys_ordii
ENSSLDG00000012300	cmss1	76	56.522	ENSEASG00005010966	CMSS1	94	62.802	Equus_asinus_asinus
ENSSLDG00000012300	cmss1	90	51.142	ENSECAG00000015662	CMSS1	91	62.319	Equus_caballus
ENSSLDG00000012300	cmss1	67	45.500	ENSEEUG00000007624	-	74	45.894	Erinaceus_europaeus
ENSSLDG00000012300	cmss1	68	74.384	ENSELUG00000019459	cmss1	69	74.396	Esox_lucius
ENSSLDG00000012300	cmss1	98	51.250	ENSFCAG00000044577	CMSS1	74	64.734	Felis_catus
ENSSLDG00000012300	cmss1	76	59.016	ENSFALG00000005816	CMSS1	87	64.251	Ficedula_albicollis
ENSSLDG00000012300	cmss1	75	58.889	ENSFDAG00000012577	CMSS1	91	65.217	Fukomys_damarensis
ENSSLDG00000012300	cmss1	72	81.143	ENSFHEG00000012008	cmss1	85	84.541	Fundulus_heteroclitus
ENSSLDG00000012300	cmss1	99	63.025	ENSGMOG00000016729	cmss1	88	67.050	Gadus_morhua
ENSSLDG00000012300	cmss1	93	53.623	ENSGALG00000015267	CMSS1	79	65.217	Gallus_gallus
ENSSLDG00000012300	cmss1	93	73.551	ENSGAFG00000021217	cmss1	98	72.325	Gambusia_affinis
ENSSLDG00000012300	cmss1	95	69.366	ENSGACG00000002798	cmss1	91	70.370	Gasterosteus_aculeatus
ENSSLDG00000012300	cmss1	88	52.607	ENSGAGG00000019861	CMSS1	81	64.251	Gopherus_agassizii
ENSSLDG00000012300	cmss1	95	50.655	ENSGGOG00000014125	CMSS1	79	63.285	Gorilla_gorilla
ENSSLDG00000012300	cmss1	96	75.524	ENSHBUG00000008431	cmss1	98	76.224	Haplochromis_burtoni
ENSSLDG00000012300	cmss1	75	60.000	ENSHGLG00000019481	CMSS1	84	65.217	Heterocephalus_glaber_female
ENSSLDG00000012300	cmss1	75	60.000	ENSHGLG00100010314	CMSS1	83	65.217	Heterocephalus_glaber_male
ENSSLDG00000012300	cmss1	92	69.231	ENSHCOG00000003222	cmss1	70	83.092	Hippocampus_comes
ENSSLDG00000012300	cmss1	99	58.503	ENSIPUG00000011591	cmss1	71	73.430	Ictalurus_punctatus
ENSSLDG00000012300	cmss1	91	53.394	ENSSTOG00000019366	CMSS1	74	62.319	Ictidomys_tridecemlineatus
ENSSLDG00000012300	cmss1	95	51.931	ENSJJAG00000014894	Cmss1	98	59.130	Jaculus_jaculus
ENSSLDG00000012300	cmss1	93	64.493	ENSKMAG00000002390	cmss1	98	63.100	Kryptolebias_marmoratus
ENSSLDG00000012300	cmss1	92	67.883	ENSLBEG00000006298	cmss1	85	83.654	Labrus_bergylta
ENSSLDG00000012300	cmss1	76	61.202	ENSLACG00000009293	CMSS1	90	67.150	Latimeria_chalumnae
ENSSLDG00000012300	cmss1	93	53.571	ENSLOCG00000009391	cmss1	73	63.768	Lepisosteus_oculatus
ENSSLDG00000012300	cmss1	75	61.667	ENSLAFG00000017509	CMSS1	91	64.251	Loxodonta_africana
ENSSLDG00000012300	cmss1	75	58.889	ENSMFAG00000045006	CMSS1	79	63.285	Macaca_fascicularis
ENSSLDG00000012300	cmss1	75	58.333	ENSMMUG00000002939	CMSS1	88	63.452	Macaca_mulatta
ENSSLDG00000012300	cmss1	75	58.889	ENSMNEG00000031315	CMSS1	79	63.285	Macaca_nemestrina
ENSSLDG00000012300	cmss1	75	58.889	ENSMLEG00000033660	CMSS1	79	63.285	Mandrillus_leucophaeus
ENSSLDG00000012300	cmss1	90	85.845	ENSMAMG00000017176	cmss1	90	78.676	Mastacembelus_armatus
ENSSLDG00000012300	cmss1	86	80.861	ENSMZEG00005021886	cmss1	90	75.368	Maylandia_zebra
ENSSLDG00000012300	cmss1	78	60.606	ENSMGAG00000014360	CMSS1	99	60.606	Meleagris_gallopavo
ENSSLDG00000012300	cmss1	76	38.462	ENSMAUG00000020609	Cmss1	68	43.204	Mesocricetus_auratus
ENSSLDG00000012300	cmss1	93	52.889	ENSMICG00000048977	CMSS1	80	64.734	Microcebus_murinus
ENSSLDG00000012300	cmss1	99	48.954	ENSMOCG00000021937	Cmss1	75	63.107	Microtus_ochrogaster
ENSSLDG00000012300	cmss1	90	68.539	ENSMMOG00000019794	cmss1	99	70.522	Mola_mola
ENSSLDG00000012300	cmss1	81	58.883	ENSMODG00000002275	CMSS1	78	64.734	Monodelphis_domestica
ENSSLDG00000012300	cmss1	85	85.024	ENSMALG00000004250	cmss1	90	77.122	Monopterus_albus
ENSSLDG00000012300	cmss1	94	53.509	MGP_CAROLIEiJ_G0020824	Cmss1	75	64.563	Mus_caroli
ENSSLDG00000012300	cmss1	94	53.070	ENSMUSG00000022748	Cmss1	75	63.592	Mus_musculus
ENSSLDG00000012300	cmss1	95	52.817	MGP_PahariEiJ_G0016524	Cmss1	75	64.078	Mus_pahari
ENSSLDG00000012300	cmss1	94	52.423	MGP_SPRETEiJ_G0021724	Cmss1	75	63.592	Mus_spretus
ENSSLDG00000012300	cmss1	79	57.292	ENSMPUG00000011324	CMSS1	80	63.592	Mustela_putorius_furo
ENSSLDG00000012300	cmss1	95	50.862	ENSMLUG00000001131	CMSS1	79	63.636	Myotis_lucifugus
ENSSLDG00000012300	cmss1	99	50.207	ENSNGAG00000020316	Cmss1	74	62.319	Nannospalax_galili
ENSSLDG00000012300	cmss1	86	80.861	ENSNBRG00000003095	cmss1	90	75.000	Neolamprologus_brichardi
ENSSLDG00000012300	cmss1	75	58.889	ENSNLEG00000034172	CMSS1	79	63.768	Nomascus_leucogenys
ENSSLDG00000012300	cmss1	71	65.698	ENSMEUG00000014505	CMSS1	91	55.072	Notamacropus_eugenii
ENSSLDG00000012300	cmss1	80	56.995	ENSOPRG00000002986	CMSS1	74	62.802	Ochotona_princeps
ENSSLDG00000012300	cmss1	75	58.333	ENSODEG00000003558	-	76	62.319	Octodon_degus
ENSSLDG00000012300	cmss1	68	54.455	ENSODEG00000009446	-	80	54.589	Octodon_degus
ENSSLDG00000012300	cmss1	80	49.741	ENSODEG00000001853	-	73	55.556	Octodon_degus
ENSSLDG00000012300	cmss1	80	59.585	ENSODEG00000005226	-	74	65.534	Octodon_degus
ENSSLDG00000012300	cmss1	85	82.039	ENSONIG00000006678	cmss1	100	74.908	Oreochromis_niloticus
ENSSLDG00000012300	cmss1	75	58.889	ENSOANG00000007529	CMSS1	89	63.462	Ornithorhynchus_anatinus
ENSSLDG00000012300	cmss1	88	55.660	ENSOCUG00000025366	CMSS1	75	63.768	Oryctolagus_cuniculus
ENSSLDG00000012300	cmss1	95	68.996	ENSORLG00000020340	cmss1	99	68.707	Oryzias_latipes
ENSSLDG00000012300	cmss1	70	76.329	ENSORLG00020012235	cmss1	88	76.329	Oryzias_latipes_hni
ENSSLDG00000012300	cmss1	92	64.000	ENSORLG00015015551	cmss1	77	76.214	Oryzias_latipes_hsok
ENSSLDG00000012300	cmss1	91	72.694	ENSOMEG00000012555	cmss1	90	72.694	Oryzias_melastigma
ENSSLDG00000012300	cmss1	75	57.778	ENSOGAG00000002045	CMSS1	91	63.768	Otolemur_garnettii
ENSSLDG00000012300	cmss1	85	56.098	ENSOARG00000017899	CMSS1	71	63.462	Ovis_aries
ENSSLDG00000012300	cmss1	93	52.000	ENSPPAG00000038515	CMSS1	76	63.285	Pan_paniscus
ENSSLDG00000012300	cmss1	98	52.083	ENSPPRG00000016767	CMSS1	74	64.734	Panthera_pardus
ENSSLDG00000012300	cmss1	98	52.083	ENSPTIG00000018274	CMSS1	74	64.251	Panthera_tigris_altaica
ENSSLDG00000012300	cmss1	94	50.661	ENSPTRG00000015157	CMSS1	84	63.285	Pan_troglodytes
ENSSLDG00000012300	cmss1	75	59.444	ENSPANG00000019980	CMSS1	82	63.768	Papio_anubis
ENSSLDG00000012300	cmss1	98	60.959	ENSPKIG00000012609	cmss1	96	62.963	Paramormyrops_kingsleyae
ENSSLDG00000012300	cmss1	68	65.842	ENSPSIG00000003849	CMSS1	90	65.217	Pelodiscus_sinensis
ENSSLDG00000012300	cmss1	68	82.843	ENSPMGG00000010286	cmss1	89	82.692	Periophthalmus_magnuspinnatus
ENSSLDG00000012300	cmss1	85	54.902	ENSPEMG00000016384	Cmss1	74	63.592	Peromyscus_maniculatus_bairdii
ENSSLDG00000012300	cmss1	69	50.980	ENSPMAG00000001146	cmss1	100	50.980	Petromyzon_marinus
ENSSLDG00000012300	cmss1	78	60.963	ENSPCIG00000015656	CMSS1	78	64.251	Phascolarctos_cinereus
ENSSLDG00000012300	cmss1	91	74.721	ENSPFOG00000016849	cmss1	92	74.539	Poecilia_formosa
ENSSLDG00000012300	cmss1	91	74.349	ENSPLAG00000008323	cmss1	92	74.170	Poecilia_latipinna
ENSSLDG00000012300	cmss1	95	76.190	ENSPMEG00000021020	cmss1	99	72.109	Poecilia_mexicana
ENSSLDG00000012300	cmss1	93	79.556	ENSPREG00000007618	cmss1	96	72.414	Poecilia_reticulata
ENSSLDG00000012300	cmss1	75	58.333	ENSPPYG00000013606	CMSS1	76	62.802	Pongo_abelii
ENSSLDG00000012300	cmss1	98	51.046	ENSPCOG00000020035	CMSS1	80	64.251	Propithecus_coquereli
ENSSLDG00000012300	cmss1	75	59.890	ENSPVAG00000017031	CMSS1	74	53.140	Pteropus_vampyrus
ENSSLDG00000012300	cmss1	86	80.861	ENSPNYG00000013428	cmss1	87	75.203	Pundamilia_nyererei
ENSSLDG00000012300	cmss1	92	61.538	ENSPNAG00000007912	cmss1	70	71.981	Pygocentrus_nattereri
ENSSLDG00000012300	cmss1	80	57.143	ENSRNOG00000027888	Cmss1	80	63.592	Rattus_norvegicus
ENSSLDG00000012300	cmss1	75	58.889	ENSRBIG00000037931	CMSS1	79	63.285	Rhinopithecus_bieti
ENSSLDG00000012300	cmss1	75	58.889	ENSRROG00000042910	CMSS1	79	63.285	Rhinopithecus_roxellana
ENSSLDG00000012300	cmss1	79	56.250	ENSSBOG00000030980	CMSS1	79	62.802	Saimiri_boliviensis_boliviensis
ENSSLDG00000012300	cmss1	68	65.842	ENSSHAG00000009321	CMSS1	82	65.217	Sarcophilus_harrisii
ENSSLDG00000012300	cmss1	76	70.109	ENSSFOG00015001509	cmss1	71	76.329	Scleropages_formosus
ENSSLDG00000012300	cmss1	90	78.195	ENSSMAG00000001653	cmss1	90	78.889	Scophthalmus_maximus
ENSSLDG00000012300	cmss1	95	94.760	ENSSDUG00000007719	cmss1	99	86.735	Seriola_dumerili
ENSSLDG00000012300	cmss1	90	52.074	ENSSARG00000003584	CMSS1	74	51.208	Sorex_araneus
ENSSLDG00000012300	cmss1	75	60.000	ENSSPUG00000003865	CMSS1	92	61.353	Sphenodon_punctatus
ENSSLDG00000012300	cmss1	96	78.947	ENSSPAG00000019182	cmss1	83	78.947	Stegastes_partitus
ENSSLDG00000012300	cmss1	88	53.302	ENSSSCG00000011970	CMSS1	74	63.285	Sus_scrofa
ENSSLDG00000012300	cmss1	76	59.563	ENSTGUG00000013635	CMSS1	90	64.251	Taeniopygia_guttata
ENSSLDG00000012300	cmss1	98	70.042	ENSTRUG00000015265	cmss1	73	84.541	Takifugu_rubripes
ENSSLDG00000012300	cmss1	92	71.493	ENSTNIG00000002880	cmss1	94	64.444	Tetraodon_nigroviridis
ENSSLDG00000012300	cmss1	68	44.554	ENSTBEG00000016722	CMSS1	74	44.928	Tupaia_belangeri
ENSSLDG00000012300	cmss1	79	57.292	ENSTTRG00000001562	CMSS1	74	62.802	Tursiops_truncatus
ENSSLDG00000012300	cmss1	93	54.222	ENSUAMG00000024209	CMSS1	93	64.251	Ursus_americanus
ENSSLDG00000012300	cmss1	93	53.778	ENSUMAG00000001983	CMSS1	80	63.768	Ursus_maritimus
ENSSLDG00000012300	cmss1	54	63.125	ENSVPAG00000000263	CMSS1	57	63.125	Vicugna_pacos
ENSSLDG00000012300	cmss1	68	64.356	ENSVVUG00000007776	-	81	63.768	Vulpes_vulpes
ENSSLDG00000012300	cmss1	79	58.854	ENSVVUG00000021647	-	84	64.734	Vulpes_vulpes
ENSSLDG00000012300	cmss1	95	49.823	ENSXETG00000011858	cmss1	74	60.386	Xenopus_tropicalis
ENSSLDG00000012300	cmss1	95	74.296	ENSXCOG00000018724	cmss1	96	72.759	Xiphophorus_couchianus
ENSSLDG00000012300	cmss1	93	74.638	ENSXMAG00000011243	cmss1	99	73.529	Xiphophorus_maculatus