EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000012686 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 1604 bases
Position: chrPEQF01099374.1:728143-729746
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000015988	SM-ATX	PF14438.6	1.1e-07	1	1
ENSSLDP00000015988	LSM14	PF12701.7	1.8e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000016583	-	279	-	ENSSLDP00000015988	92 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000012686's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000012686's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000012686	-	100	100.000	ENSSLDG00000011341	-	100	100.000
ENSSLDG00000012686	-	90	72.289	ENSSLDG00000011706	-	90	72.289

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000012686	-	92	81.176	ENSAPOG00000009997	-	79	81.176	Acanthochromis_polyacanthus
ENSSLDG00000012686	-	98	84.444	ENSACIG00000003134	-	72	84.444	Amphilophus_citrinellus
ENSSLDG00000012686	-	92	84.706	ENSAPEG00000013779	-	84	84.706	Amphiprion_percula
ENSSLDG00000012686	-	100	92.391	ENSATEG00000015882	-	100	92.391	Anabas_testudineus
ENSSLDG00000012686	-	98	86.667	ENSCVAG00000012411	-	92	86.667	Cyprinodon_variegatus
ENSSLDG00000012686	-	92	68.235	ENSCVAG00000005570	-	88	68.235	Cyprinodon_variegatus
ENSSLDG00000012686	-	92	88.235	ENSGAFG00000013718	-	88	88.235	Gambusia_affinis
ENSSLDG00000012686	-	90	84.337	ENSHBUG00000012323	-	79	84.337	Haplochromis_burtoni
ENSSLDG00000012686	-	87	70.000	ENSHBUG00000011864	-	60	70.000	Haplochromis_burtoni
ENSSLDG00000012686	-	87	65.000	ENSHCOG00000004862	-	73	65.000	Hippocampus_comes
ENSSLDG00000012686	-	91	90.476	ENSKMAG00000012850	-	88	90.476	Kryptolebias_marmoratus
ENSSLDG00000012686	-	91	89.286	ENSKMAG00000016674	-	76	89.286	Kryptolebias_marmoratus
ENSSLDG00000012686	-	98	90.000	ENSLBEG00000007971	-	86	90.000	Labrus_bergylta
ENSSLDG00000012686	-	92	72.941	ENSLBEG00000016427	lsm14b	59	72.941	Labrus_bergylta
ENSSLDG00000012686	-	91	75.000	ENSNGAG00000016305	-	67	75.000	Nannospalax_galili
ENSSLDG00000012686	-	87	71.250	ENSNBRG00000022606	-	60	71.250	Neolamprologus_brichardi
ENSSLDG00000012686	-	90	83.133	ENSNBRG00000022370	-	79	83.133	Neolamprologus_brichardi
ENSSLDG00000012686	-	96	85.227	ENSORLG00020018184	-	90	85.227	Oryzias_latipes_hni
ENSSLDG00000012686	-	87	87.500	ENSOMEG00000007241	-	96	87.500	Oryzias_melastigma
ENSSLDG00000012686	-	92	74.118	ENSPKIG00000003275	lsm14b	79	74.118	Paramormyrops_kingsleyae
ENSSLDG00000012686	-	92	70.588	ENSPMGG00000014569	lsm14b	53	70.588	Periophthalmus_magnuspinnatus
ENSSLDG00000012686	-	100	73.404	ENSPMGG00000004595	-	95	73.404	Periophthalmus_magnuspinnatus
ENSSLDG00000012686	-	88	88.889	ENSPREG00000007817	-	93	88.889	Poecilia_reticulata
ENSSLDG00000012686	-	92	69.412	ENSPREG00000016484	-	55	69.412	Poecilia_reticulata
ENSSLDG00000012686	-	87	70.000	ENSPNYG00000019601	-	60	70.000	Pundamilia_nyererei
ENSSLDG00000012686	-	90	84.337	ENSPNYG00000021706	-	78	84.337	Pundamilia_nyererei
ENSSLDG00000012686	-	98	83.333	ENSSPAG00000018837	-	88	83.333	Stegastes_partitus
ENSSLDG00000012686	-	87	71.250	ENSXCOG00000017365	-	81	71.250	Xiphophorus_couchianus
ENSSLDG00000012686	-	100	83.696	ENSXCOG00000011423	-	98	83.696	Xiphophorus_couchianus
ENSSLDG00000012686	-	100	83.696	ENSXMAG00000015481	-	98	83.696	Xiphophorus_maculatus