EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000012760 (Gene tree)
Gene ID: -
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: mRNA decay activator protein ZFP36L2-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 3598 bases
Position: chrPEQF01099173.1:722251-725848
Accession: 111668005
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000016067	zf-CCCH	PF00642.24	5.7e-32	1	4
ENSSLDP00000016067	zf-CCCH	PF00642.24	5.7e-32	2	4
ENSSLDP00000016067	zf-CCCH	PF00642.24	5.7e-32	3	4
ENSSLDP00000016067	zf-CCCH	PF00642.24	5.7e-32	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000016662	-	2856	XM_023423910	ENSSLDP00000016067	329 (aa)	XP_023279678	UPI000C6F531E

Gene Model

Click here to download ENSSLDG00000012760's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000012760's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000012760	cth1	100	99.392	ENSSLDG00000004516	-	100	99.392
ENSSLDG00000012760	cth1	99	99.390	ENSSLDG00000010023	-	100	99.390

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000012760	cth1	90	71.141	ENSAPOG00000012552	cth1	95	71.959	Acanthochromis_polyacanthus
ENSSLDG00000012760	cth1	87	64.808	ENSACIG00000016026	cth1	99	66.269	Amphilophus_citrinellus
ENSSLDG00000012760	cth1	100	75.227	ENSAOCG00000001644	cth1	100	75.684	Amphiprion_ocellaris
ENSSLDG00000012760	cth1	100	75.227	ENSAPEG00000008930	cth1	100	75.684	Amphiprion_percula
ENSSLDG00000012760	cth1	99	80.547	ENSATEG00000002281	cth1	97	77.812	Anabas_testudineus
ENSSLDG00000012760	cth1	90	62.963	ENSACLG00000015353	cth1	95	62.333	Astatotilapia_calliptera
ENSSLDG00000012760	cth1	97	58.537	ENSAMXG00000025717	cth1	92	58.065	Astyanax_mexicanus
ENSSLDG00000012760	cth1	100	73.795	ENSCSEG00000014617	cth1	100	74.699	Cynoglossus_semilaevis
ENSSLDG00000012760	cth1	100	61.329	ENSCVAG00000001680	cth1	65	61.212	Cyprinodon_variegatus
ENSSLDG00000012760	cth1	91	59.091	ENSDARG00000057328	cth1	90	58.900	Danio_rerio
ENSSLDG00000012760	cth1	99	59.078	ENSELUG00000012738	cth1	99	56.560	Esox_lucius
ENSSLDG00000012760	cth1	100	64.742	ENSFHEG00000022665	cth1	100	62.614	Fundulus_heteroclitus
ENSSLDG00000012760	cth1	99	65.165	ENSGMOG00000007360	cth1	100	64.565	Gadus_morhua
ENSSLDG00000012760	cth1	100	62.006	ENSGAFG00000019288	cth1	100	60.790	Gambusia_affinis
ENSSLDG00000012760	cth1	99	70.427	ENSGACG00000000802	cth1	99	69.817	Gasterosteus_aculeatus
ENSSLDG00000012760	cth1	100	64.438	ENSHBUG00000014400	cth1	100	63.554	Haplochromis_burtoni
ENSSLDG00000012760	cth1	99	51.976	ENSHCOG00000010276	cth1	99	50.152	Hippocampus_comes
ENSSLDG00000012760	cth1	97	59.939	ENSIPUG00000018040	cth1	90	57.929	Ictalurus_punctatus
ENSSLDG00000012760	cth1	100	66.565	ENSKMAG00000005944	cth1	100	65.957	Kryptolebias_marmoratus
ENSSLDG00000012760	cth1	100	82.175	ENSLBEG00000019253	cth1	100	82.175	Labrus_bergylta
ENSSLDG00000012760	cth1	67	49.550	ENSLOCG00000002047	cth1	82	55.249	Lepisosteus_oculatus
ENSSLDG00000012760	cth1	99	62.632	ENSMAMG00000001525	cth1	99	58.886	Mastacembelus_armatus
ENSSLDG00000012760	cth1	100	64.134	ENSMZEG00005022335	cth1	100	63.554	Maylandia_zebra
ENSSLDG00000012760	cth1	95	77.170	ENSMMOG00000020518	cth1	100	76.527	Mola_mola
ENSSLDG00000012760	cth1	100	65.885	ENSMALG00000020738	cth1	69	66.045	Monopterus_albus
ENSSLDG00000012760	cth1	98	59.502	ENSNBRG00000022789	cth1	87	63.668	Neolamprologus_brichardi
ENSSLDG00000012760	cth1	99	64.939	ENSONIG00000021318	cth1	99	64.653	Oreochromis_niloticus
ENSSLDG00000012760	cth1	100	62.349	ENSORLG00000022847	cth1	100	60.241	Oryzias_latipes
ENSSLDG00000012760	cth1	100	62.349	ENSORLG00020011979	cth1	100	60.843	Oryzias_latipes_hni
ENSSLDG00000012760	cth1	100	62.651	ENSORLG00015013084	cth1	100	60.241	Oryzias_latipes_hsok
ENSSLDG00000012760	cth1	100	60.909	ENSOMEG00000005809	cth1	85	58.788	Oryzias_melastigma
ENSSLDG00000012760	cth1	97	52.853	ENSPKIG00000015883	cth1	88	50.955	Paramormyrops_kingsleyae
ENSSLDG00000012760	cth1	99	73.414	ENSPMGG00000004275	cth1	100	72.508	Periophthalmus_magnuspinnatus
ENSSLDG00000012760	cth1	100	64.742	ENSPFOG00000013583	cth1	94	64.134	Poecilia_formosa
ENSSLDG00000012760	cth1	100	64.742	ENSPLAG00000018158	cth1	94	64.134	Poecilia_latipinna
ENSSLDG00000012760	cth1	100	65.046	ENSPMEG00000005744	cth1	100	64.438	Poecilia_mexicana
ENSSLDG00000012760	cth1	99	63.939	ENSPREG00000004099	cth1	100	63.415	Poecilia_reticulata
ENSSLDG00000012760	cth1	91	61.538	ENSPNYG00000016705	cth1	79	62.308	Pundamilia_nyererei
ENSSLDG00000012760	cth1	97	59.327	ENSPNAG00000013147	cth1	90	57.929	Pygocentrus_nattereri
ENSSLDG00000012760	cth1	92	55.449	ENSSFOG00015017190	cth1	79	57.308	Scleropages_formosus
ENSSLDG00000012760	cth1	100	83.587	ENSSMAG00000007977	cth1	100	82.371	Scophthalmus_maximus
ENSSLDG00000012760	cth1	100	96.960	ENSSDUG00000004321	cth1	100	96.960	Seriola_dumerili
ENSSLDG00000012760	cth1	100	75.831	ENSSPAG00000018659	cth1	100	76.596	Stegastes_partitus
ENSSLDG00000012760	cth1	99	69.091	ENSTRUG00000012770	cth1	99	68.788	Takifugu_rubripes
ENSSLDG00000012760	cth1	99	67.576	ENSTNIG00000000740	cth1	99	67.273	Tetraodon_nigroviridis
ENSSLDG00000012760	cth1	82	59.108	ENSXCOG00000003710	cth1	82	57.647	Xiphophorus_couchianus
ENSSLDG00000012760	cth1	100	65.046	ENSXMAG00000023885	cth1	100	64.134	Xiphophorus_maculatus