EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000012771 (Gene tree)
Gene ID: -
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 11761 bases
Position: chrPEQF01096605.1:252522-264282
Accession: 111650095
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000016109	PWI	PF01480.17	8.7e-31	1	1
ENSSLDP00000016091	PWI	PF01480.17	9.1e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000016704	-	3898	XM_023399884	ENSSLDP00000016109	835 (aa)	XP_023255652	UPI000C6FBC3E
ENSSLDT00000016686	-	3985	XM_023399883	ENSSLDP00000016091	864 (aa)	XP_023255651	UPI000C6FB6A8

Gene Model

Click here to download ENSSLDG00000012771's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000012771's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000012771	srrm1	59	93.957	ENSAPOG00000001170	srrm1	99	98.718	Acanthochromis_polyacanthus
ENSSLDG00000012771	srrm1	60	92.278	ENSAOCG00000021757	srrm1	100	84.855	Amphiprion_ocellaris
ENSSLDG00000012771	srrm1	100	83.931	ENSAPEG00000018964	srrm1	100	84.162	Amphiprion_percula
ENSSLDG00000012771	srrm1	100	89.931	ENSATEG00000007659	srrm1	100	89.699	Anabas_testudineus
ENSSLDG00000012771	srrm1	100	78.774	ENSCSEG00000000122	srrm1	59	77.519	Cynoglossus_semilaevis
ENSSLDG00000012771	srrm1	58	49.175	ENSDARG00000001244	srrm1	99	97.436	Danio_rerio
ENSSLDG00000012771	srrm1	69	79.433	ENSGMOG00000019099	srrm1	78	77.586	Gadus_morhua
ENSSLDG00000012771	srrm1	60	82.466	ENSGACG00000007266	srrm1	87	82.927	Gasterosteus_aculeatus
ENSSLDG00000012771	srrm1	78	92.440	ENSLBEG00000013936	srrm1	72	87.298	Labrus_bergylta
ENSSLDG00000012771	srrm1	100	88.657	ENSMAMG00000010305	srrm1	100	89.815	Mastacembelus_armatus
ENSSLDG00000012771	srrm1	100	78.111	ENSORLG00015014743	srrm1	100	77.995	Oryzias_latipes_hsok
ENSSLDG00000012771	srrm1	89	77.209	ENSPMEG00000002603	srrm1	96	76.786	Poecilia_mexicana
ENSSLDG00000012771	srrm1	69	82.721	ENSPREG00000002652	srrm1	64	89.189	Poecilia_reticulata
ENSSLDG00000012771	srrm1	100	99.537	ENSSDUG00000012967	srrm1	100	99.537	Seriola_dumerili
ENSSLDG00000012771	srrm1	100	88.208	ENSSPAG00000009507	srrm1	60	94.402	Stegastes_partitus
ENSSLDG00000012771	srrm1	100	72.666	ENSTRUG00000002519	srrm1	100	76.328	Takifugu_rubripes
ENSSLDG00000012771	srrm1	99	70.838	ENSTNIG00000016909	srrm1	100	75.319	Tetraodon_nigroviridis