EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000012947 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 7280 bases
Position: chrPEQF01099303.1:491539-498818
Accession: 111669804
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000016323	RRM_1	PF00076.22	4e-30	1	2
ENSSLDP00000016323	RRM_1	PF00076.22	4e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000016920	-	1940	XM_023426252	ENSSLDP00000016323	340 (aa)	XP_023282020	UPI000C6F4732

Gene Model

Click here to download ENSSLDG00000012947's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000012947's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000012947	trnau1apb	60	30.047	ENSSLDG00000014625	-	68	31.034
ENSSLDG00000012947	trnau1apb	95	34.985	ENSSLDG00000012101	trnau1apa	67	58.065

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000012947	trnau1apb	99	77.286	ENSAPOG00000010086	trnau1apb	99	79.056	Acanthochromis_polyacanthus
ENSSLDG00000012947	trnau1apb	99	84.956	ENSACIG00000001863	trnau1apb	99	82.353	Amphilophus_citrinellus
ENSSLDG00000012947	trnau1apb	99	93.510	ENSAOCG00000011891	trnau1apb	99	93.510	Amphiprion_ocellaris
ENSSLDG00000012947	trnau1apb	99	85.546	ENSAPEG00000008029	trnau1apb	99	92.920	Amphiprion_percula
ENSSLDG00000012947	trnau1apb	99	94.100	ENSATEG00000002196	trnau1apb	99	94.100	Anabas_testudineus
ENSSLDG00000012947	trnau1apb	99	84.884	ENSACLG00000003016	trnau1apb	99	82.319	Astatotilapia_calliptera
ENSSLDG00000012947	trnau1apb	99	64.602	ENSAMXG00000001805	trnau1apb	99	65.385	Astyanax_mexicanus
ENSSLDG00000012947	trnau1apb	100	88.270	ENSCSEG00000018215	trnau1apb	99	85.924	Cynoglossus_semilaevis
ENSSLDG00000012947	trnau1apb	95	80.547	ENSCVAG00000017866	trnau1apb	99	81.155	Cyprinodon_variegatus
ENSSLDG00000012947	trnau1apb	99	64.793	ENSDARG00000056475	trnau1apb	98	65.385	Danio_rerio
ENSSLDG00000012947	trnau1apb	99	64.223	ENSELUG00000016683	trnau1apb	99	65.103	Esox_lucius
ENSSLDG00000012947	trnau1apb	99	84.058	ENSFHEG00000001267	trnau1apb	99	84.058	Fundulus_heteroclitus
ENSSLDG00000012947	trnau1apb	99	72.238	ENSGMOG00000001160	trnau1apb	99	76.176	Gadus_morhua
ENSSLDG00000012947	trnau1apb	52	94.915	ENSGAFG00000006770	trnau1apb	99	73.684	Gambusia_affinis
ENSSLDG00000012947	trnau1apb	99	82.301	ENSGACG00000014944	trnau1apb	99	83.186	Gasterosteus_aculeatus
ENSSLDG00000012947	trnau1apb	71	39.592	ENSGAGG00000022384	-	78	39.184	Gopherus_agassizii
ENSSLDG00000012947	trnau1apb	99	92.035	ENSHBUG00000018944	trnau1apb	99	90.560	Haplochromis_burtoni
ENSSLDG00000012947	trnau1apb	68	83.043	ENSHCOG00000011350	trnau1apb	78	79.592	Hippocampus_comes
ENSSLDG00000012947	trnau1apb	99	64.244	ENSIPUG00000008843	tsp1l	99	65.976	Ictalurus_punctatus
ENSSLDG00000012947	trnau1apb	64	90.868	ENSKMAG00000010082	trnau1apb	99	84.795	Kryptolebias_marmoratus
ENSSLDG00000012947	trnau1apb	99	89.971	ENSLBEG00000020480	trnau1apb	99	89.971	Labrus_bergylta
ENSSLDG00000012947	trnau1apb	99	52.616	ENSLOCG00000013175	trnau1apb	99	51.594	Lepisosteus_oculatus
ENSSLDG00000012947	trnau1apb	99	94.100	ENSMAMG00000012192	trnau1apb	99	92.920	Mastacembelus_armatus
ENSSLDG00000012947	trnau1apb	99	92.035	ENSMZEG00005014852	trnau1apb	99	90.560	Maylandia_zebra
ENSSLDG00000012947	trnau1apb	71	38.525	ENSMGAG00000003234	-	98	37.959	Meleagris_gallopavo
ENSSLDG00000012947	trnau1apb	97	79.420	ENSMMOG00000021521	trnau1apb	100	77.971	Mola_mola
ENSSLDG00000012947	trnau1apb	99	76.036	ENSMALG00000003772	trnau1apb	99	76.627	Monopterus_albus
ENSSLDG00000012947	trnau1apb	97	84.685	ENSNBRG00000000751	trnau1apb	99	82.036	Neolamprologus_brichardi
ENSSLDG00000012947	trnau1apb	99	79.762	ENSONIG00000016639	trnau1apb	99	76.855	Oreochromis_niloticus
ENSSLDG00000012947	trnau1apb	99	75.510	ENSORLG00000013265	trnau1apb	99	85.131	Oryzias_latipes
ENSSLDG00000012947	trnau1apb	99	85.924	ENSORLG00020004464	trnau1apb	99	85.924	Oryzias_latipes_hni
ENSSLDG00000012947	trnau1apb	99	85.924	ENSORLG00015021098	trnau1apb	99	85.924	Oryzias_latipes_hsok
ENSSLDG00000012947	trnau1apb	99	77.551	ENSOMEG00000016531	trnau1apb	99	86.589	Oryzias_melastigma
ENSSLDG00000012947	trnau1apb	99	58.065	ENSPKIG00000007995	trnau1apb	99	57.983	Paramormyrops_kingsleyae
ENSSLDG00000012947	trnau1apb	71	41.870	ENSPSIG00000004189	-	78	38.462	Pelodiscus_sinensis
ENSSLDG00000012947	trnau1apb	99	63.905	ENSPMGG00000018509	trnau1apb	88	82.160	Periophthalmus_magnuspinnatus
ENSSLDG00000012947	trnau1apb	99	81.268	ENSPFOG00000003938	trnau1apb	99	83.188	Poecilia_formosa
ENSSLDG00000012947	trnau1apb	99	81.268	ENSPLAG00000015480	trnau1apb	99	83.188	Poecilia_latipinna
ENSSLDG00000012947	trnau1apb	99	81.268	ENSPMEG00000012743	trnau1apb	99	83.188	Poecilia_mexicana
ENSSLDG00000012947	trnau1apb	99	80.403	ENSPREG00000015035	trnau1apb	99	82.319	Poecilia_reticulata
ENSSLDG00000012947	trnau1apb	99	82.267	ENSPNYG00000012127	trnau1apb	99	79.710	Pundamilia_nyererei
ENSSLDG00000012947	trnau1apb	99	65.396	ENSPNAG00000019138	trnau1apb	98	66.864	Pygocentrus_nattereri
ENSSLDG00000012947	trnau1apb	99	60.116	ENSSFOG00015014158	trnau1apb	99	62.353	Scleropages_formosus
ENSSLDG00000012947	trnau1apb	100	90.882	ENSSMAG00000001745	trnau1apb	100	90.882	Scophthalmus_maximus
ENSSLDG00000012947	trnau1apb	100	99.412	ENSSDUG00000011109	trnau1apb	100	99.412	Seriola_dumerili
ENSSLDG00000012947	trnau1apb	71	34.884	ENSSPUG00000016701	-	82	35.200	Sphenodon_punctatus
ENSSLDG00000012947	trnau1apb	99	94.395	ENSSPAG00000006917	trnau1apb	99	94.395	Stegastes_partitus
ENSSLDG00000012947	trnau1apb	99	81.525	ENSTRUG00000008608	trnau1apb	99	80.636	Takifugu_rubripes
ENSSLDG00000012947	trnau1apb	99	69.643	ENSTNIG00000000916	trnau1apb	99	67.560	Tetraodon_nigroviridis
ENSSLDG00000012947	trnau1apb	94	73.476	ENSXCOG00000007974	trnau1apb	94	74.847	Xiphophorus_couchianus
ENSSLDG00000012947	trnau1apb	99	81.556	ENSXMAG00000029918	trnau1apb	99	83.478	Xiphophorus_maculatus