EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000012950 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: im:7148349|si:ch211-125c5.1
Full Name: spen family transcriptional repressor
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 27432 bases
Position: chrPEQF01098828.1:45256-72687
Accession: 111656206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000016344	RRM_5	PF13893.6	1e-07	1	2
ENSSLDP00000016344	RRM_5	PF13893.6	1e-07	2	2
ENSSLDP00000016344	RRM_1	PF00076.22	1.5e-40	1	3
ENSSLDP00000016344	RRM_1	PF00076.22	1.5e-40	2	3
ENSSLDP00000016344	RRM_1	PF00076.22	1.5e-40	3	3
ENSSLDP00000016375	RRM_1	PF00076.22	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000016972	-	873	-	ENSSLDP00000016375	290 (aa)	-	-
ENSSLDT00000016937	-	12989	XM_023407845	ENSSLDP00000016344	3546 (aa)	XP_023263613	UPI000C6F7EAE

Gene Model

Click here to download ENSSLDG00000012950's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000012950's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000012950	-	96	76.355	ENSSLDG00000023347	si:ch1073-335m2.2	99	80.541

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000012950	-	90	76.030	ENSG00000065526	SPEN	85	91.667	Homo_sapiens
ENSSLDG00000012950	-	97	79.679	ENSAPOG00000011411	si:ch1073-335m2.2	99	80.541	Acanthochromis_polyacanthus
ENSSLDG00000012950	-	100	96.552	ENSAPOG00000009853	-	100	96.552	Acanthochromis_polyacanthus
ENSSLDG00000012950	-	91	75.093	ENSAMEG00000011817	SPEN	96	81.461	Ailuropoda_melanoleuca
ENSSLDG00000012950	-	83	74.379	ENSAOCG00000008077	si:ch1073-335m2.2	99	73.826	Amphiprion_ocellaris
ENSSLDG00000012950	-	100	87.363	ENSAOCG00000014505	-	100	87.307	Amphiprion_ocellaris
ENSSLDG00000012950	-	100	87.254	ENSAPEG00000010288	-	100	87.198	Amphiprion_percula
ENSSLDG00000012950	-	97	78.646	ENSAPEG00000013515	si:ch1073-335m2.2	99	80.541	Amphiprion_percula
ENSSLDG00000012950	-	98	79.679	ENSATEG00000007674	si:ch1073-335m2.2	100	80.541	Anabas_testudineus
ENSSLDG00000012950	-	100	87.174	ENSATEG00000005627	-	100	87.230	Anabas_testudineus
ENSSLDG00000012950	-	81	72.917	ENSAPLG00000012618	SPEN	99	79.470	Anas_platyrhynchos
ENSSLDG00000012950	-	81	67.181	ENSACAG00000013761	SPEN	100	45.000	Anolis_carolinensis
ENSSLDG00000012950	-	81	72.727	ENSANAG00000034428	SPEN	87	73.256	Aotus_nancymaae
ENSSLDG00000012950	-	95	78.022	ENSACLG00000021433	si:ch1073-335m2.2	99	84.615	Astatotilapia_calliptera
ENSSLDG00000012950	-	97	98.000	ENSACLG00000016922	-	100	83.866	Astatotilapia_calliptera
ENSSLDG00000012950	-	86	86.592	ENSAMXG00000012485	spen	100	56.411	Astyanax_mexicanus
ENSSLDG00000012950	-	91	75.093	ENSBTAG00000018729	SPEN	97	81.461	Bos_taurus
ENSSLDG00000012950	-	90	75.655	ENSCJAG00000008527	SPEN	91	82.584	Callithrix_jacchus
ENSSLDG00000012950	-	91	75.836	ENSCAFG00000016132	-	92	82.584	Canis_familiaris
ENSSLDG00000012950	-	91	75.836	ENSCHIG00000025070	SPEN	98	82.584	Capra_hircus
ENSSLDG00000012950	-	90	43.536	ENSTSYG00000036016	SPEN	88	46.566	Carlito_syrichta
ENSSLDG00000012950	-	81	73.222	ENSCAPG00000013803	SPEN	91	79.470	Cavia_aperea
ENSSLDG00000012950	-	80	73.109	ENSCPOG00000014036	SPEN	87	79.333	Cavia_porcellus
ENSSLDG00000012950	-	91	75.465	ENSCCAG00000020258	SPEN	87	82.584	Cebus_capucinus
ENSSLDG00000012950	-	83	86.667	ENSCATG00000015079	SPEN	86	82.584	Cercocebus_atys
ENSSLDG00000012950	-	90	76.030	ENSCSAG00000000841	SPEN	97	82.584	Chlorocebus_sabaeus
ENSSLDG00000012950	-	91	75.465	ENSCPBG00000010477	SPEN	99	82.584	Chrysemys_picta_bellii
ENSSLDG00000012950	-	88	69.732	ENSCANG00000034547	SPEN	86	73.256	Colobus_angolensis_palliatus
ENSSLDG00000012950	-	90	76.779	ENSCGRG00001007725	Spen	78	83.146	Cricetulus_griseus_chok1gshd
ENSSLDG00000012950	-	71	72.642	ENSCGRG00000010581	Spen	77	80.000	Cricetulus_griseus_crigri
ENSSLDG00000012950	-	87	96.067	ENSCSEG00000003915	-	100	81.795	Cynoglossus_semilaevis
ENSSLDG00000012950	-	97	77.157	ENSCVAG00000009075	si:ch1073-335m2.2	99	80.000	Cyprinodon_variegatus
ENSSLDG00000012950	-	87	95.531	ENSCVAG00000016346	-	100	76.889	Cyprinodon_variegatus
ENSSLDG00000012950	-	90	69.968	ENSDARG00000074245	spen	100	92.593	Danio_rerio
ENSSLDG00000012950	-	96	74.129	ENSDARG00000074332	si:ch1073-335m2.2	99	77.717	Danio_rerio
ENSSLDG00000012950	-	91	76.119	ENSDNOG00000041948	SPEN	96	83.146	Dasypus_novemcinctus
ENSSLDG00000012950	-	81	72.727	ENSDORG00000023909	Spen	89	78.621	Dipodomys_ordii
ENSSLDG00000012950	-	80	72.803	ENSETEG00000016692	-	54	79.333	Echinops_telfairi
ENSSLDG00000012950	-	59	63.243	ENSEBUG00000005464	-	63	66.667	Eptatretus_burgeri
ENSSLDG00000012950	-	94	86.765	ENSEASG00005015911	SPEN	96	82.584	Equus_asinus_asinus
ENSSLDG00000012950	-	94	86.765	ENSECAG00000008833	SPEN	96	82.584	Equus_caballus
ENSSLDG00000012950	-	90	74.532	ENSEEUG00000010255	SPEN	66	88.372	Erinaceus_europaeus
ENSSLDG00000012950	-	96	78.000	ENSELUG00000007726	si:ch1073-335m2.2	99	83.333	Esox_lucius
ENSSLDG00000012950	-	87	45.990	ENSFALG00000003551	SPEN	100	45.807	Ficedula_albicollis
ENSSLDG00000012950	-	79	72.532	ENSFDAG00000010212	SPEN	89	78.621	Fukomys_damarensis
ENSSLDG00000012950	-	90	91.221	ENSFHEG00000013136	-	92	91.667	Fundulus_heteroclitus
ENSSLDG00000012950	-	99	75.472	ENSFHEG00000004544	si:ch1073-335m2.2	100	81.622	Fundulus_heteroclitus
ENSSLDG00000012950	-	97	90.761	ENSGMOG00000008397	-	98	92.179	Gadus_morhua
ENSSLDG00000012950	-	91	69.697	ENSGMOG00000008156	si:ch1073-335m2.2	97	77.083	Gadus_morhua
ENSSLDG00000012950	-	91	75.465	ENSGALG00000036932	SPEN	99	82.584	Gallus_gallus
ENSSLDG00000012950	-	96	97.207	ENSGAFG00000015819	-	90	91.985	Gambusia_affinis
ENSSLDG00000012950	-	98	75.490	ENSGAFG00000021570	si:ch1073-335m2.2	99	79.459	Gambusia_affinis
ENSSLDG00000012950	-	91	67.424	ENSGACG00000001176	si:ch1073-335m2.2	71	80.233	Gasterosteus_aculeatus
ENSSLDG00000012950	-	90	92.453	ENSGACG00000005341	-	100	79.821	Gasterosteus_aculeatus
ENSSLDG00000012950	-	91	75.465	ENSGAGG00000020785	SPEN	99	82.584	Gopherus_agassizii
ENSSLDG00000012950	-	97	97.000	ENSHBUG00000020626	-	100	83.895	Haplochromis_burtoni
ENSSLDG00000012950	-	93	84.615	ENSHBUG00000023253	si:ch1073-335m2.2	99	84.615	Haplochromis_burtoni
ENSSLDG00000012950	-	90	75.940	ENSHGLG00000019259	SPEN	79	82.584	Heterocephalus_glaber_female
ENSSLDG00000012950	-	79	71.674	ENSHGLG00100019294	SPEN	75	81.868	Heterocephalus_glaber_male
ENSSLDG00000012950	-	90	77.863	ENSHCOG00000002791	-	90	77.863	Hippocampus_comes
ENSSLDG00000012950	-	94	77.536	ENSHCOG00000006004	si:ch1073-335m2.2	99	77.536	Hippocampus_comes
ENSSLDG00000012950	-	86	87.222	ENSIPUG00000021668	spen	100	54.305	Ictalurus_punctatus
ENSSLDG00000012950	-	95	67.265	ENSIPUG00000018212	si:ch1073-335m2.2	99	76.087	Ictalurus_punctatus
ENSSLDG00000012950	-	79	72.650	ENSSTOG00000021428	SPEN	88	78.621	Ictidomys_tridecemlineatus
ENSSLDG00000012950	-	90	76.404	ENSJJAG00000010882	Spen	88	83.146	Jaculus_jaculus
ENSSLDG00000012950	-	97	96.111	ENSKMAG00000003882	-	100	80.538	Kryptolebias_marmoratus
ENSSLDG00000012950	-	97	77.157	ENSKMAG00000021725	si:ch1073-335m2.2	99	79.459	Kryptolebias_marmoratus
ENSSLDG00000012950	-	91	66.288	ENSLBEG00000020855	si:ch1073-335m2.2	99	82.840	Labrus_bergylta
ENSSLDG00000012950	-	84	79.973	ENSLBEG00000019129	-	100	79.940	Labrus_bergylta
ENSSLDG00000012950	-	90	85.057	ENSLBEG00000019151	-	89	85.057	Labrus_bergylta
ENSSLDG00000012950	-	89	74.436	ENSLACG00000003258	SPEN	99	83.146	Latimeria_chalumnae
ENSSLDG00000012950	-	97	85.517	ENSLOCG00000007896	si:ch1073-335m2.2	97	85.517	Lepisosteus_oculatus
ENSSLDG00000012950	-	90	68.165	ENSLAFG00000004524	SPEN	77	81.967	Loxodonta_africana
ENSSLDG00000012950	-	90	76.030	ENSMFAG00000041974	SPEN	86	82.584	Macaca_fascicularis
ENSSLDG00000012950	-	90	76.030	ENSMMUG00000008026	SPEN	86	82.584	Macaca_mulatta
ENSSLDG00000012950	-	90	68.539	ENSMLEG00000039293	SPEN	88	71.348	Mandrillus_leucophaeus
ENSSLDG00000012950	-	100	96.897	ENSMAMG00000014536	-	100	96.897	Mastacembelus_armatus
ENSSLDG00000012950	-	97	74.396	ENSMAMG00000023870	si:ch1073-335m2.2	99	80.000	Mastacembelus_armatus
ENSSLDG00000012950	-	89	82.270	ENSMZEG00005021491	-	99	82.150	Maylandia_zebra
ENSSLDG00000012950	-	95	78.022	ENSMZEG00005011762	si:ch1073-335m2.2	99	84.615	Maylandia_zebra
ENSSLDG00000012950	-	91	75.465	ENSMGAG00000005180	-	98	82.584	Meleagris_gallopavo
ENSSLDG00000012950	-	90	76.404	ENSMAUG00000008318	Spen	92	82.584	Mesocricetus_auratus
ENSSLDG00000012950	-	90	75.655	ENSMICG00000030994	SPEN	96	82.022	Microcebus_murinus
ENSSLDG00000012950	-	91	76.208	ENSMOCG00000016083	Spen	86	82.584	Microtus_ochrogaster
ENSSLDG00000012950	-	90	94.253	ENSMMOG00000017059	-	90	94.253	Mola_mola
ENSSLDG00000012950	-	94	75.521	ENSMMOG00000021742	si:ch1073-335m2.2	98	80.814	Mola_mola
ENSSLDG00000012950	-	91	75.373	ENSMODG00000003411	SPEN	99	82.584	Monodelphis_domestica
ENSSLDG00000012950	-	100	87.665	ENSMALG00000008625	-	100	87.665	Monopterus_albus
ENSSLDG00000012950	-	91	75.836	MGP_CAROLIEiJ_G0026745	Spen	89	82.022	Mus_caroli
ENSSLDG00000012950	-	91	76.208	ENSMUSG00000040761	Spen	97	82.584	Mus_musculus
ENSSLDG00000012950	-	90	76.030	MGP_PahariEiJ_G0029076	Spen	97	82.022	Mus_pahari
ENSSLDG00000012950	-	91	75.836	MGP_SPRETEiJ_G0027724	Spen	97	82.022	Mus_spretus
ENSSLDG00000012950	-	98	45.081	ENSMPUG00000016317	SPEN	96	74.545	Mustela_putorius_furo
ENSSLDG00000012950	-	95	88.172	ENSMLUG00000010144	SPEN	94	88.172	Myotis_lucifugus
ENSSLDG00000012950	-	90	76.030	ENSNGAG00000000641	Spen	93	82.584	Nannospalax_galili
ENSSLDG00000012950	-	95	78.571	ENSNBRG00000005733	si:ch1073-335m2.2	99	84.615	Neolamprologus_brichardi
ENSSLDG00000012950	-	85	81.872	ENSNBRG00000022090	-	100	81.746	Neolamprologus_brichardi
ENSSLDG00000012950	-	81	73.140	ENSNLEG00000007652	SPEN	78	79.085	Nomascus_leucogenys
ENSSLDG00000012950	-	90	84.375	ENSMEUG00000002422	SPEN	90	84.375	Notamacropus_eugenii
ENSSLDG00000012950	-	80	73.640	ENSOPRG00000015800	SPEN	82	80.000	Ochotona_princeps
ENSSLDG00000012950	-	90	75.940	ENSODEG00000016644	SPEN	99	82.584	Octodon_degus
ENSSLDG00000012950	-	90	92.830	ENSONIG00000006573	-	99	88.758	Oreochromis_niloticus
ENSSLDG00000012950	-	81	71.667	ENSOANG00000004165	-	99	79.019	Ornithorhynchus_anatinus
ENSSLDG00000012950	-	90	61.710	ENSOCUG00000010840	SPEN	97	62.941	Oryctolagus_cuniculus
ENSSLDG00000012950	-	91	65.909	ENSORLG00000018414	si:ch1073-335m2.2	99	79.459	Oryzias_latipes
ENSSLDG00000012950	-	87	66.816	ENSORLG00000028894	-	100	66.624	Oryzias_latipes
ENSSLDG00000012950	-	91	65.909	ENSORLG00020009351	si:ch1073-335m2.2	74	79.459	Oryzias_latipes_hni
ENSSLDG00000012950	-	87	67.363	ENSORLG00020007735	-	100	67.170	Oryzias_latipes_hni
ENSSLDG00000012950	-	100	69.354	ENSORLG00015022085	-	100	69.157	Oryzias_latipes_hsok
ENSSLDG00000012950	-	95	83.333	ENSORLG00015005537	si:ch1073-335m2.2	74	78.919	Oryzias_latipes_hsok
ENSSLDG00000012950	-	99	59.498	ENSOMEG00000004509	si:ch1073-335m2.2	99	84.049	Oryzias_melastigma
ENSSLDG00000012950	-	88	92.222	ENSOMEG00000007639	-	100	69.015	Oryzias_melastigma
ENSSLDG00000012950	-	90	76.030	ENSOGAG00000025110	SPEN	96	82.584	Otolemur_garnettii
ENSSLDG00000012950	-	88	70.229	ENSOARG00000008477	SPEN	96	74.269	Ovis_aries
ENSSLDG00000012950	-	90	76.030	ENSPANG00000006293	SPEN	86	82.584	Papio_anubis
ENSSLDG00000012950	-	97	100.000	ENSPKIG00000010492	si:ch1073-335m2.2	100	100.000	Paramormyrops_kingsleyae
ENSSLDG00000012950	-	90	82.510	ENSPKIG00000002617	SPEN	90	82.510	Paramormyrops_kingsleyae
ENSSLDG00000012950	-	81	72.727	ENSPSIG00000008026	SPEN	99	79.470	Pelodiscus_sinensis
ENSSLDG00000012950	-	90	91.321	ENSPFOG00000024806	-	99	88.384	Poecilia_formosa
ENSSLDG00000012950	-	98	77.665	ENSPFOG00000017986	si:ch1073-335m2.2	99	80.000	Poecilia_formosa
ENSSLDG00000012950	-	98	77.665	ENSPLAG00000016625	si:ch1073-335m2.2	99	80.000	Poecilia_latipinna
ENSSLDG00000012950	-	94	97.207	ENSPLAG00000001398	-	94	91.667	Poecilia_latipinna
ENSSLDG00000012950	-	96	96.648	ENSPMEG00000006764	-	90	91.603	Poecilia_mexicana
ENSSLDG00000012950	-	98	77.665	ENSPMEG00000002674	si:ch1073-335m2.2	99	80.000	Poecilia_mexicana
ENSSLDG00000012950	-	96	96.648	ENSPREG00000010399	-	90	91.603	Poecilia_reticulata
ENSSLDG00000012950	-	98	77.665	ENSPREG00000005357	si:ch1073-335m2.2	99	80.000	Poecilia_reticulata
ENSSLDG00000012950	-	87	71.552	ENSPCAG00000009543	SPEN	76	81.421	Procavia_capensis
ENSSLDG00000012950	-	90	75.281	ENSPCOG00000021735	SPEN	96	82.022	Propithecus_coquereli
ENSSLDG00000012950	-	91	75.465	ENSPVAG00000013794	SPEN	65	82.022	Pteropus_vampyrus
ENSSLDG00000012950	-	95	78.022	ENSPNYG00000009042	si:ch1073-335m2.2	99	84.615	Pundamilia_nyererei
ENSSLDG00000012950	-	97	98.000	ENSPNYG00000012379	-	100	83.923	Pundamilia_nyererei
ENSSLDG00000012950	-	98	72.464	ENSPNAG00000011452	si:ch1073-335m2.2	99	80.000	Pygocentrus_nattereri
ENSSLDG00000012950	-	86	88.136	ENSPNAG00000020795	spen	87	83.333	Pygocentrus_nattereri
ENSSLDG00000012950	-	81	73.140	ENSRNOG00000033556	Spen	97	79.470	Rattus_norvegicus
ENSSLDG00000012950	-	89	69.697	ENSRBIG00000039654	SPEN	86	79.333	Rhinopithecus_bieti
ENSSLDG00000012950	-	81	73.140	ENSRROG00000035686	SPEN	65	81.967	Rhinopithecus_roxellana
ENSSLDG00000012950	-	83	71.255	ENSSHAG00000004960	SPEN	98	79.339	Sarcophilus_harrisii
ENSSLDG00000012950	-	90	73.510	ENSSFOG00015010267	si:ch1073-335m2.2	100	56.062	Scleropages_formosus
ENSSLDG00000012950	-	86	66.667	ENSSFOG00015007131	si:ch1073-335m2.2	100	57.258	Scleropages_formosus
ENSSLDG00000012950	-	100	88.361	ENSSMAG00000008996	-	100	88.305	Scophthalmus_maximus
ENSSLDG00000012950	-	92	68.045	ENSSMAG00000000125	si:ch1073-335m2.2	99	79.891	Scophthalmus_maximus
ENSSLDG00000012950	-	100	100.000	ENSSDUG00000003476	-	100	100.000	Seriola_dumerili
ENSSLDG00000012950	-	97	76.733	ENSSDUG00000008416	si:ch1073-335m2.2	99	80.541	Seriola_dumerili
ENSSLDG00000012950	-	87	44.943	ENSSPUG00000001866	-	100	44.856	Sphenodon_punctatus
ENSSLDG00000012950	-	97	80.645	ENSSPAG00000012454	si:ch1073-335m2.2	99	81.081	Stegastes_partitus
ENSSLDG00000012950	-	100	88.125	ENSSPAG00000006014	-	100	87.872	Stegastes_partitus
ENSSLDG00000012950	-	91	75.836	ENSSSCG00000034484	SPEN	84	82.584	Sus_scrofa
ENSSLDG00000012950	-	84	78.804	ENSTRUG00000021008	si:ch1073-335m2.2	99	78.804	Takifugu_rubripes
ENSSLDG00000012950	-	99	80.473	ENSTRUG00000024350	-	100	78.359	Takifugu_rubripes
ENSSLDG00000012950	-	97	80.899	ENSTNIG00000014666	si:ch1073-335m2.2	71	80.899	Tetraodon_nigroviridis
ENSSLDG00000012950	-	97	87.246	ENSTNIG00000010907	-	100	87.359	Tetraodon_nigroviridis
ENSSLDG00000012950	-	70	79.195	ENSTBEG00000003628	SPEN	70	81.967	Tupaia_belangeri
ENSSLDG00000012950	-	83	78.500	ENSTTRG00000015704	SPEN	74	81.967	Tursiops_truncatus
ENSSLDG00000012950	-	91	75.836	ENSUAMG00000009600	SPEN	96	82.584	Ursus_americanus
ENSSLDG00000012950	-	83	71.774	ENSUMAG00000021641	SPEN	96	77.070	Ursus_maritimus
ENSSLDG00000012950	-	88	100.000	ENSVVUG00000028951	SPEN	95	100.000	Vulpes_vulpes
ENSSLDG00000012950	-	90	74.627	ENSXETG00000023114	SPEN	99	80.337	Xenopus_tropicalis
ENSSLDG00000012950	-	98	76.884	ENSXCOG00000004516	si:ch1073-335m2.2	99	80.000	Xiphophorus_couchianus
ENSSLDG00000012950	-	98	77.665	ENSXMAG00000029887	si:ch1073-335m2.2	100	80.000	Xiphophorus_maculatus
ENSSLDG00000012950	-	96	97.207	ENSXMAG00000021384	-	99	96.277	Xiphophorus_maculatus